Wall clock time and date at job start Mon Mar 30 2020 01:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99683 * 2 1 4 4 C 1.52995 * 109.46950 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46978 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.47269 * 304.99958 * 5 4 3 7 7 C 1.52995 * 109.47195 * 184.99863 * 5 4 3 8 8 S 1.81402 * 109.47313 * 64.99551 * 5 4 3 9 9 O 1.42095 * 110.54592 * 291.62952 * 8 5 4 10 10 O 1.42108 * 110.53999 * 68.37846 * 8 5 4 11 11 N 1.65598 * 104.45129 * 180.02562 * 8 5 4 12 12 C 1.36939 * 120.00014 * 89.99861 * 11 8 5 13 13 H 1.07995 * 120.00069 * 307.82554 * 12 11 8 14 14 C 1.38813 * 119.99757 * 127.82421 * 12 11 8 15 15 N 1.31614 * 120.00172 * 347.63536 * 14 12 11 16 16 Si 1.86795 * 119.99951 * 167.63563 * 14 12 11 17 17 H 1.48507 * 109.47339 * 59.99974 * 16 14 12 18 18 H 1.48499 * 109.47259 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47132 * 299.99779 * 16 14 12 20 20 C 1.46503 * 120.00130 * 270.00421 * 11 8 5 21 21 C 1.52998 * 117.49887 * 181.99369 * 20 11 8 22 22 C 1.53005 * 117.50021 * 113.33410 * 20 11 8 23 23 H 1.08999 * 109.47330 * 60.00125 * 1 2 3 24 24 H 1.09011 * 109.46744 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47456 * 299.99652 * 1 2 3 26 26 H 1.09005 * 109.46888 * 59.99898 * 3 2 1 27 27 H 1.09000 * 109.47189 * 300.00205 * 3 2 1 28 28 H 1.08995 * 109.47556 * 60.00137 * 4 3 2 29 29 H 1.09002 * 109.46884 * 299.99538 * 4 3 2 30 30 H 1.08997 * 109.47645 * 59.99943 * 7 5 4 31 31 H 1.09001 * 109.47335 * 179.97438 * 7 5 4 32 32 H 1.09001 * 109.47505 * 299.99882 * 7 5 4 33 33 H 0.96998 * 120.00513 * 175.32987 * 15 14 12 34 34 H 1.09000 * 115.54688 * 327.66216 * 20 11 8 35 35 H 1.08996 * 117.50009 * 0.02562 * 21 20 11 36 36 H 1.09002 * 117.50115 * 145.01815 * 21 20 11 37 37 H 1.08997 * 117.49737 * 214.98240 * 22 20 11 38 38 H 1.09000 * 117.49329 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 4.1576 2.5826 0.0000 6 1 3.7665 3.1548 -0.8413 7 6 5.6777 2.4642 -0.1263 8 16 3.7437 3.4280 1.5506 9 8 2.3545 3.7223 1.6028 10 8 4.4033 2.8098 2.6471 11 7 4.4699 4.9105 1.4196 12 6 3.7878 5.9604 0.8650 13 1 3.3211 5.8503 -0.1027 14 6 3.6964 7.1663 1.5465 15 7 4.0458 7.2342 2.8136 16 14 3.0775 8.6926 0.6653 17 1 1.6973 8.4539 0.1718 18 1 3.0754 9.8411 1.6066 19 1 3.9683 8.9964 -0.4834 20 6 5.8421 5.0988 1.8970 21 6 6.4407 6.5028 1.7908 22 6 6.9198 5.3931 0.8515 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6885 1.8465 0.8900 27 1 1.6885 1.8465 -0.8900 28 1 3.8567 0.6441 -0.8908 29 1 3.8573 0.6438 0.8892 30 1 5.9265 1.9562 -1.0581 31 1 6.1210 3.4600 -0.1263 32 1 6.0688 1.8920 0.7150 33 1 4.0466 8.0893 3.2714 34 1 6.1276 4.4937 2.7575 35 1 5.8134 7.2865 1.3661 36 1 7.1203 6.8214 2.5812 37 1 7.9143 4.9820 1.0244 38 1 6.6077 5.4462 -0.1915 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331764867.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:36 Heat of formation + Delta-G solvation = -83.900396 kcal Electronic energy + Delta-G solvation = -21290.559355 eV Core-core repulsion = 18068.913676 eV Total energy + Delta-G solvation = -3221.645679 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -37.95313 -37.21935 -35.95628 -34.93800 -34.69704 -32.76840 -30.97461 -29.39889 -26.30750 -24.76653 -23.27172 -21.69292 -21.29761 -20.55862 -18.41803 -17.22334 -16.66792 -16.31641 -15.97390 -15.45244 -15.20241 -14.82381 -14.44783 -14.00176 -13.57458 -13.29588 -13.03549 -12.65500 -12.48639 -12.13881 -11.70153 -11.49233 -11.37790 -11.33745 -11.11911 -11.01836 -10.90110 -10.83771 -10.80894 -10.66498 -10.34303 -10.32510 -9.77685 -9.62902 -9.41711 -9.13168 -8.53436 -7.45519 -6.27068 -4.14454 1.31896 3.18631 3.23989 3.25156 3.70869 3.92404 4.30272 4.78119 4.82613 4.88724 5.03926 5.13836 5.22247 5.24639 5.40499 5.48088 5.62930 5.64138 5.68671 5.73631 5.95024 5.97621 6.04951 6.10739 6.13870 6.17365 6.28580 6.46418 6.47746 6.64253 6.99695 7.19329 7.28870 7.45426 7.70801 8.38342 8.98350 9.39392 10.74598 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021200 B = 0.007030 C = 0.005980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.434306 B = 3982.027012 C = 4681.228707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.393 6.393 3 C 0.032 3.968 4 C -0.100 4.100 5 C -0.599 4.599 6 H 0.129 0.871 7 C -0.135 4.135 8 S 2.562 3.438 9 O -0.960 6.960 10 O -0.991 6.991 11 N -0.813 5.813 12 C -0.297 4.297 13 H 0.081 0.919 14 C 0.055 3.945 15 N -0.838 5.838 16 Si 0.905 3.095 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.116 3.884 21 C -0.136 4.136 22 C -0.230 4.230 23 H 0.041 0.959 24 H 0.084 0.916 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.268 0.732 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.081 -6.499 -6.498 9.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.313 6.313 3 C -0.045 4.045 4 C -0.139 4.139 5 C -0.704 4.704 6 H 0.147 0.853 7 C -0.193 4.193 8 S 2.661 3.339 9 O -0.950 6.950 10 O -0.981 6.981 11 N -0.641 5.641 12 C -0.435 4.435 13 H 0.098 0.902 14 C -0.156 4.156 15 N -0.473 5.473 16 Si 0.731 3.269 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.197 1.197 20 C 0.007 3.993 21 C -0.176 4.176 22 C -0.271 4.271 23 H 0.060 0.940 24 H 0.102 0.898 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.585 -7.049 -5.586 9.013 hybrid contribution -0.298 1.072 -1.061 1.538 sum 0.287 -5.976 -6.647 8.943 Atomic orbital electron populations 1.22756 0.80998 1.02399 1.00508 1.87790 1.19851 1.27992 1.95617 1.23065 0.93717 0.84932 1.02767 1.21251 0.93025 0.94754 1.04868 1.30474 1.05438 1.07546 1.26935 0.85292 1.21599 0.90310 1.04544 1.02831 1.07761 0.74818 0.75333 0.75941 1.93434 1.32715 1.82757 1.86100 1.93410 1.76460 1.79209 1.48986 1.51946 1.17390 1.21865 1.72874 1.18824 1.32939 0.91240 1.00454 0.90163 1.25580 0.95209 1.00341 0.94424 1.70119 1.43195 1.25956 1.08034 0.86374 0.79967 0.81199 0.79355 1.19472 1.20727 1.19696 1.21056 0.81208 1.00751 0.96265 1.23000 1.01264 0.93392 0.99900 1.23490 0.98482 1.07577 0.97507 0.94037 0.89760 0.93608 0.90896 0.92343 0.89694 0.90254 0.91930 0.89533 0.91496 0.92161 0.87244 0.87075 0.90884 0.90416 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.39 -6.25 10.70 -35.23 -0.38 -6.62 16 3 C 0.03 0.53 5.63 37.15 0.21 0.74 16 4 C -0.10 -1.59 5.05 -26.73 -0.14 -1.73 16 5 C -0.60 -10.25 3.03 -26.73 -0.08 -10.33 16 6 H 0.13 2.05 8.14 -51.92 -0.42 1.63 16 7 C -0.14 -2.05 8.91 37.16 0.33 -1.72 16 8 S 2.56 58.06 4.47 -107.50 -0.48 57.58 16 9 O -0.96 -24.49 14.97 -57.54 -0.86 -25.35 16 10 O -0.99 -24.41 16.70 -57.54 -0.96 -25.37 16 11 N -0.81 -19.32 2.72 -53.42 -0.15 -19.46 16 12 C -0.30 -7.45 8.14 -15.06 -0.12 -7.57 16 13 H 0.08 1.92 7.86 -52.49 -0.41 1.50 16 14 C 0.06 1.39 3.20 -17.43 -0.06 1.34 16 15 N -0.84 -22.20 11.38 55.49 0.63 -21.57 16 16 Si 0.91 19.43 29.52 -169.99 -5.02 14.42 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 C 0.12 2.55 5.11 -67.93 -0.35 2.21 16 21 C -0.14 -2.85 8.28 -26.69 -0.22 -3.07 16 22 C -0.23 -4.18 8.48 -26.69 -0.23 -4.40 16 23 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 1.37 5.61 -51.93 -0.29 1.08 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.34 4.61 -51.93 -0.24 1.10 16 32 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 33 H 0.27 6.71 8.32 -40.82 -0.34 6.37 16 34 H 0.11 2.45 7.40 -51.93 -0.38 2.07 16 35 H 0.11 2.53 5.13 -51.93 -0.27 2.27 16 36 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.09 1.59 7.65 -51.93 -0.40 1.19 16 LS Contribution 314.72 15.07 4.74 4.74 Total: -1.00 -30.63 314.72 -7.78 -38.41 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.77 Total: 6.29 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: 0.46 Total: -23.06 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.49 Total: -41.04 kcal Atomic # 8 Polarization: -55.14 SS G_CDS: -2.20 Total: -57.34 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.42 kcal Atomic # 16 Polarization: 58.06 SS G_CDS: -0.48 Total: 57.58 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.63 -7.78 -38.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331764867.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.492 kcal (2) G-P(sol) polarization free energy of solvation -30.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds