Wall clock time and date at job start Mon Mar 30 2020 01:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99683 * 2 1 4 4 C 1.52995 * 109.46950 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46978 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.47269 * 304.99958 * 5 4 3 7 7 C 1.52995 * 109.47195 * 184.99863 * 5 4 3 8 8 S 1.81402 * 109.47313 * 64.99551 * 5 4 3 9 9 O 1.42095 * 110.54592 * 291.62952 * 8 5 4 10 10 O 1.42108 * 110.53999 * 68.37846 * 8 5 4 11 11 N 1.65598 * 104.45129 * 180.02562 * 8 5 4 12 12 C 1.36939 * 120.00014 * 89.99861 * 11 8 5 13 13 H 1.07995 * 120.00069 * 307.82554 * 12 11 8 14 14 C 1.38813 * 119.99757 * 127.82421 * 12 11 8 15 15 N 1.31614 * 120.00172 * 347.63536 * 14 12 11 16 16 Si 1.86795 * 119.99951 * 167.63563 * 14 12 11 17 17 H 1.48507 * 109.47339 * 59.99974 * 16 14 12 18 18 H 1.48499 * 109.47259 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47132 * 299.99779 * 16 14 12 20 20 C 1.46503 * 120.00130 * 270.00421 * 11 8 5 21 21 C 1.52998 * 117.49887 * 181.99369 * 20 11 8 22 22 C 1.53005 * 117.50021 * 113.33410 * 20 11 8 23 23 H 1.08999 * 109.47330 * 60.00125 * 1 2 3 24 24 H 1.09011 * 109.46744 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47456 * 299.99652 * 1 2 3 26 26 H 1.09005 * 109.46888 * 59.99898 * 3 2 1 27 27 H 1.09000 * 109.47189 * 300.00205 * 3 2 1 28 28 H 1.08995 * 109.47556 * 60.00137 * 4 3 2 29 29 H 1.09002 * 109.46884 * 299.99538 * 4 3 2 30 30 H 1.08997 * 109.47645 * 59.99943 * 7 5 4 31 31 H 1.09001 * 109.47335 * 179.97438 * 7 5 4 32 32 H 1.09001 * 109.47505 * 299.99882 * 7 5 4 33 33 H 0.96998 * 120.00513 * 175.32987 * 15 14 12 34 34 H 1.09000 * 115.54688 * 327.66216 * 20 11 8 35 35 H 1.08996 * 117.50009 * 0.02562 * 21 20 11 36 36 H 1.09002 * 117.50115 * 145.01815 * 21 20 11 37 37 H 1.08997 * 117.49737 * 214.98240 * 22 20 11 38 38 H 1.09000 * 117.49329 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 4.1576 2.5826 0.0000 6 1 3.7665 3.1548 -0.8413 7 6 5.6777 2.4642 -0.1263 8 16 3.7437 3.4280 1.5506 9 8 2.3545 3.7223 1.6028 10 8 4.4033 2.8098 2.6471 11 7 4.4699 4.9105 1.4196 12 6 3.7878 5.9604 0.8650 13 1 3.3211 5.8503 -0.1027 14 6 3.6964 7.1663 1.5465 15 7 4.0458 7.2342 2.8136 16 14 3.0775 8.6926 0.6653 17 1 1.6973 8.4539 0.1718 18 1 3.0754 9.8411 1.6066 19 1 3.9683 8.9964 -0.4834 20 6 5.8421 5.0988 1.8970 21 6 6.4407 6.5028 1.7908 22 6 6.9198 5.3931 0.8515 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6885 1.8465 0.8900 27 1 1.6885 1.8465 -0.8900 28 1 3.8567 0.6441 -0.8908 29 1 3.8573 0.6438 0.8892 30 1 5.9265 1.9562 -1.0581 31 1 6.1210 3.4600 -0.1263 32 1 6.0688 1.8920 0.7150 33 1 4.0466 8.0893 3.2714 34 1 6.1276 4.4937 2.7575 35 1 5.8134 7.2865 1.3661 36 1 7.1203 6.8214 2.5812 37 1 7.9143 4.9820 1.0244 38 1 6.6077 5.4462 -0.1915 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331764867.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:35 Heat of formation + Delta-G solvation = -105.548946 kcal Electronic energy + Delta-G solvation = -21291.498107 eV Core-core repulsion = 18068.913676 eV Total energy + Delta-G solvation = -3222.584431 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.15089 -38.89311 -37.80918 -36.61411 -36.19344 -34.53387 -32.76684 -30.64101 -27.36316 -26.62200 -24.55588 -23.13343 -22.80753 -22.23541 -20.20312 -18.85532 -18.42921 -17.77172 -17.32682 -16.85544 -16.59629 -16.48702 -16.07840 -15.54966 -15.19919 -14.71344 -14.31381 -14.11871 -13.82048 -13.60524 -13.46431 -13.12272 -12.91650 -12.77545 -12.73106 -12.54945 -12.50628 -12.40535 -12.23674 -12.09985 -12.04429 -11.89621 -11.44053 -11.08023 -10.80222 -10.67814 -10.33579 -9.21254 -8.13239 -6.06641 -0.37941 1.48089 1.49916 1.56225 2.15798 2.49864 2.60994 3.02108 3.20010 3.41352 3.51539 3.71566 3.83283 3.90885 4.22696 4.35770 4.37932 4.40851 4.46736 4.51142 4.54159 4.60310 4.71932 4.77380 4.87595 4.87769 4.91241 5.00246 5.06209 5.28981 5.39796 5.53688 5.75227 5.95297 6.04152 6.53660 7.12751 7.53510 8.88022 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021200 B = 0.007030 C = 0.005980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.434306 B = 3982.027012 C = 4681.228707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.405 6.405 3 C 0.027 3.973 4 C -0.102 4.102 5 C -0.562 4.562 6 H 0.150 0.850 7 C -0.139 4.139 8 S 2.547 3.453 9 O -1.004 7.004 10 O -1.024 7.024 11 N -0.825 5.825 12 C -0.313 4.313 13 H 0.087 0.913 14 C 0.013 3.987 15 N -0.878 5.878 16 Si 0.962 3.038 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.254 1.254 20 C 0.084 3.916 21 C -0.149 4.149 22 C -0.184 4.184 23 H 0.055 0.945 24 H 0.112 0.888 25 H 0.037 0.963 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.122 0.878 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.266 0.734 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.083 -7.493 -9.380 12.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.324 6.324 3 C -0.049 4.049 4 C -0.141 4.141 5 C -0.674 4.674 6 H 0.168 0.832 7 C -0.197 4.197 8 S 2.653 3.347 9 O -0.994 6.994 10 O -1.014 7.014 11 N -0.653 5.653 12 C -0.449 4.449 13 H 0.105 0.895 14 C -0.194 4.194 15 N -0.515 5.515 16 Si 0.786 3.214 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.178 1.178 20 C -0.024 4.024 21 C -0.188 4.188 22 C -0.224 4.224 23 H 0.074 0.926 24 H 0.130 0.870 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.141 0.859 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.583 -7.990 -8.423 11.717 hybrid contribution -0.635 1.207 -0.194 1.377 sum 0.947 -6.783 -8.616 11.007 Atomic orbital electron populations 1.23033 0.79361 1.04397 1.00861 1.87763 1.21700 1.27316 1.95658 1.23046 0.94477 0.85401 1.02022 1.21358 0.92452 0.93832 1.06443 1.30074 1.07586 1.07648 1.22078 0.83240 1.21731 0.87999 1.05012 1.04917 1.07632 0.73798 0.75464 0.77806 1.93383 1.34848 1.83573 1.87579 1.93364 1.76556 1.79412 1.52062 1.51973 1.18118 1.22021 1.73190 1.19127 1.33058 0.91869 1.00869 0.89521 1.26306 0.95279 1.02934 0.94856 1.70234 1.45443 1.26331 1.09505 0.85497 0.79306 0.77910 0.78714 1.19880 1.21033 1.17798 1.21103 0.81721 1.01534 0.98035 1.22941 1.01607 0.92907 1.01370 1.23522 0.98387 1.03752 0.96762 0.92591 0.87016 0.94399 0.94012 0.90838 0.85938 0.90742 0.87872 0.89815 0.91635 0.92433 0.88859 0.89034 0.90247 0.87026 0.88246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 11.01 113.37 1.25 1.69 16 2 O -0.40 -12.15 10.70 -148.98 -1.59 -13.74 16 3 C 0.03 0.87 5.63 71.98 0.41 1.28 16 4 C -0.10 -2.96 5.05 30.59 0.15 -2.81 16 5 C -0.56 -17.79 3.03 30.59 0.09 -17.69 16 6 H 0.15 4.23 8.14 -2.39 -0.02 4.21 16 7 C -0.14 -3.68 8.91 71.98 0.64 -3.03 16 8 S 2.55 116.83 4.47 -56.49 -0.25 116.58 16 9 O -1.00 -52.96 14.97 -127.65 -1.91 -54.87 16 10 O -1.02 -51.94 16.70 -127.65 -2.13 -54.07 16 11 N -0.83 -39.51 2.72 -322.93 -0.88 -40.39 16 12 C -0.31 -15.80 8.14 84.03 0.68 -15.12 16 13 H 0.09 4.12 7.86 -2.91 -0.02 4.10 16 14 C 0.01 0.67 3.20 84.86 0.27 0.94 16 15 N -0.88 -48.12 11.38 21.65 0.25 -47.88 16 16 Si 0.96 40.13 29.52 68.60 2.02 42.15 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 20 C 0.08 3.71 5.11 44.99 0.23 3.94 16 21 C -0.15 -6.19 8.28 30.62 0.25 -5.94 16 22 C -0.18 -6.24 8.48 30.62 0.26 -5.98 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 25 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.04 1.60 5.61 -2.38 -0.01 1.59 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.08 2.29 4.61 -2.39 -0.01 2.28 16 32 H 0.06 1.78 8.11 -2.39 -0.02 1.76 16 33 H 0.27 13.85 8.32 -92.71 -0.77 13.08 16 34 H 0.09 4.31 7.40 -2.39 -0.02 4.29 16 35 H 0.09 4.19 5.13 -2.39 -0.01 4.18 16 36 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.10 3.19 7.65 -2.39 -0.02 3.17 16 Total: -1.00 -69.02 314.72 0.78 -68.23 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 1.04 Total: 26.70 kcal Atomic # 6 Polarization: -46.96 SS G_CDS: 4.24 Total: -42.72 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -0.63 Total: -88.26 kcal Atomic # 8 Polarization: -117.05 SS G_CDS: -5.64 Total: -122.68 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.02 Total: 42.15 kcal Atomic # 16 Polarization: 116.83 SS G_CDS: -0.25 Total: 116.58 kcal Total: -69.02 0.78 -68.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331764867.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.317 kcal (2) G-P(sol) polarization free energy of solvation -69.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds