Wall clock time and date at job start Mon Mar 30 2020 01:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99699 * 2 1 4 4 H 1.09003 * 109.46886 * 29.99839 * 3 2 1 5 5 C 1.52992 * 109.46842 * 269.99399 * 3 2 1 6 6 C 1.52997 * 109.46798 * 149.99753 * 3 2 1 7 7 S 1.81399 * 109.47185 * 299.99731 * 6 3 2 8 8 O 1.42101 * 110.54620 * 291.62872 * 7 6 3 9 9 O 1.42098 * 110.54432 * 68.37560 * 7 6 3 10 10 N 1.65604 * 104.45082 * 180.02562 * 7 6 3 11 11 C 1.46495 * 119.99943 * 64.52765 * 10 7 6 12 12 C 1.53002 * 109.46972 * 159.81795 * 11 10 7 13 13 C 1.50695 * 115.55186 * 65.63832 * 12 11 10 14 14 H 1.07997 * 120.00085 * 264.64227 * 13 12 11 15 15 C 1.37883 * 119.99811 * 84.64355 * 13 12 11 16 16 N 1.31514 * 119.99551 * 184.33107 * 15 13 12 17 17 Si 1.86795 * 120.00132 * 4.32963 * 15 13 12 18 18 H 1.48497 * 109.47095 * 94.16383 * 17 15 13 19 19 H 1.48505 * 109.46928 * 214.16058 * 17 15 13 20 20 H 1.48494 * 109.47209 * 334.15811 * 17 15 13 21 21 C 1.53005 * 117.49484 * 279.96764 * 12 11 10 22 22 C 1.53004 * 117.49817 * 211.30983 * 12 11 10 23 23 H 1.08999 * 109.47953 * 300.00370 * 1 2 3 24 24 H 1.09004 * 109.47226 * 60.00446 * 1 2 3 25 25 H 1.08999 * 109.47286 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47808 * 300.00451 * 5 3 2 27 27 H 1.09000 * 109.47193 * 60.00678 * 5 3 2 28 28 H 1.09000 * 109.46994 * 179.97438 * 5 3 2 29 29 H 1.09000 * 109.47560 * 59.99892 * 6 3 2 30 30 H 1.09007 * 109.46860 * 179.97438 * 6 3 2 31 31 H 0.96998 * 119.99796 * 244.52948 * 10 7 6 32 32 H 1.09006 * 109.47263 * 279.81280 * 11 10 7 33 33 H 1.08996 * 109.47666 * 39.81304 * 11 10 7 34 34 H 0.96999 * 119.99717 * 179.97438 * 16 15 13 35 35 H 1.08993 * 117.50219 * 359.97438 * 21 12 11 36 36 H 1.09000 * 117.49710 * 145.02605 * 21 12 11 37 37 H 1.08999 * 117.50165 * 214.98273 * 22 12 11 38 38 H 1.09009 * 117.49598 * 359.97252 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3588 1.2633 0.7213 7 16 3.1128 0.7110 2.4316 8 8 2.4089 1.6949 3.1770 9 8 2.7174 -0.6535 2.4629 10 7 4.6328 0.7116 3.0887 11 6 5.3673 1.9707 3.2345 12 6 6.4702 1.7996 4.2811 13 6 7.5703 0.8371 3.9147 14 1 7.5248 -0.1883 4.2507 15 6 8.6350 1.2656 3.1506 16 7 9.5511 0.4070 2.7592 17 14 8.7762 3.0655 2.6712 18 1 9.6322 3.7743 3.6561 19 1 9.3837 3.1717 1.3203 20 1 7.4249 3.6811 2.6561 21 6 6.0649 1.8817 5.7542 22 6 6.8524 3.0264 5.1117 23 1 -0.3635 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 2.8830 1.0774 -1.9563 27 1 1.2569 1.8014 -1.9563 28 1 2.6606 2.7673 -1.4425 29 1 4.0241 0.5694 0.2076 30 1 3.8023 2.2591 0.7209 31 1 5.0368 -0.1218 3.3771 32 1 5.8134 2.2440 2.2781 33 1 4.6824 2.7562 3.5535 34 1 10.3000 0.7084 2.2213 35 1 5.0128 2.0581 5.9777 36 1 6.5943 1.2399 6.4584 37 1 7.8995 3.1372 5.3934 38 1 6.3184 3.9555 4.9121 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331784925.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:45 Heat of formation + Delta-G solvation = -94.914185 kcal Electronic energy + Delta-G solvation = -20582.751255 eV Core-core repulsion = 17360.627982 eV Total energy + Delta-G solvation = -3222.123273 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.62730 -37.44857 -36.68215 -35.58501 -33.45762 -33.06620 -32.15312 -27.98001 -26.72296 -26.34598 -24.90523 -21.92979 -21.63780 -19.34354 -18.88016 -17.19382 -17.14634 -16.78824 -16.29646 -15.54867 -15.39877 -15.01771 -14.80424 -14.34669 -13.67106 -13.38953 -13.01910 -12.90120 -12.77112 -12.63548 -12.54993 -12.52496 -11.76017 -11.72795 -11.65550 -11.64516 -11.14734 -11.10547 -10.93320 -10.65561 -10.50318 -10.16656 -9.89782 -9.58556 -9.25787 -8.87714 -8.55680 -8.52100 -6.17999 -4.21887 0.57511 3.10862 3.22435 3.32888 3.35632 3.40608 4.00188 4.34996 4.41036 4.49703 4.68544 4.87006 4.89985 5.09140 5.10142 5.18600 5.21391 5.40339 5.42998 5.53639 5.56568 5.72873 5.90772 5.96645 5.98428 6.06463 6.19447 6.46634 6.62961 6.71659 6.87037 7.08166 7.09289 7.66194 7.67949 8.42209 8.85040 9.44747 10.93360 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023549 B = 0.005607 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.711453 B = 4992.262448 C = 5426.501716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.380 6.380 3 C 0.094 3.906 4 H 0.075 0.925 5 C -0.166 4.166 6 C -0.639 4.639 7 S 2.614 3.386 8 O -0.968 6.968 9 O -0.950 6.950 10 N -1.098 6.098 11 C 0.150 3.850 12 C -0.008 4.008 13 C -0.488 4.488 14 H 0.079 0.921 15 C 0.078 3.922 16 N -0.894 5.894 17 Si 0.877 3.123 18 H -0.279 1.279 19 H -0.294 1.294 20 H -0.256 1.256 21 C -0.176 4.176 22 C -0.196 4.196 23 H 0.045 0.955 24 H 0.044 0.956 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.425 0.575 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.265 0.735 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.341 4.524 -6.519 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.299 6.299 3 C 0.035 3.965 4 H 0.093 0.907 5 C -0.224 4.224 6 C -0.767 4.767 7 S 2.705 3.295 8 O -0.958 6.958 9 O -0.940 6.940 10 N -0.860 5.860 11 C 0.023 3.977 12 C -0.010 4.010 13 C -0.525 4.525 14 H 0.097 0.903 15 C -0.125 4.125 16 N -0.531 5.531 17 Si 0.704 3.296 18 H -0.205 1.205 19 H -0.221 1.221 20 H -0.180 1.180 21 C -0.214 4.214 22 C -0.234 4.234 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.112 0.888 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.163 0.837 30 H 0.160 0.840 31 H 0.262 0.738 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.927 4.260 -6.256 16.736 hybrid contribution 0.857 1.135 -0.808 1.635 sum -14.071 5.395 -7.063 16.643 Atomic orbital electron populations 1.22910 0.80467 1.03585 1.00157 1.88073 1.20257 1.26445 1.95091 1.21704 0.91690 0.85774 0.97321 0.90743 1.22211 1.02671 1.02154 0.95378 1.30828 1.05131 1.14132 1.26569 1.04752 0.73711 0.74521 0.76564 1.93566 1.71844 1.63316 1.67056 1.93584 1.80940 1.33016 1.86453 1.55242 1.36528 1.16721 1.77477 1.21069 0.93436 0.83294 0.99871 1.19502 0.96085 0.97015 0.88429 1.20232 1.02594 0.96718 1.32990 0.90263 1.24994 0.95309 0.97454 0.94727 1.69903 1.12536 1.34436 1.36211 0.86887 0.79206 0.86034 0.77434 1.20468 1.22099 1.17955 1.22844 0.98359 1.02099 0.98057 1.23011 1.00177 0.92542 1.07704 0.93643 0.93693 0.88842 0.91109 0.91989 0.91109 0.83683 0.83970 0.73811 0.92525 0.92472 0.92513 0.90585 0.89456 0.89330 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.38 -5.09 9.39 -41.98 -0.39 -5.48 16 3 C 0.09 1.11 2.77 -26.74 -0.07 1.04 16 4 H 0.07 0.77 7.79 -51.93 -0.40 0.37 16 5 C -0.17 -1.56 9.53 37.15 0.35 -1.21 16 6 C -0.64 -8.15 5.78 37.16 0.21 -7.93 16 7 S 2.61 42.81 5.25 -107.50 -0.56 42.25 16 8 O -0.97 -17.74 17.46 -57.54 -1.00 -18.75 16 9 O -0.95 -18.06 17.41 -61.89 -1.08 -19.13 16 10 N -1.10 -19.75 5.83 -10.61 -0.06 -19.82 16 11 C 0.15 2.87 5.58 -4.04 -0.02 2.85 16 12 C -0.01 -0.17 0.89 -155.66 -0.14 -0.31 16 13 C -0.49 -12.64 9.05 -34.44 -0.31 -12.95 16 14 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 15 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 16 N -0.89 -25.88 13.96 55.43 0.77 -25.11 16 17 Si 0.88 20.22 24.94 -169.99 -4.24 15.98 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.26 -5.38 5.70 56.52 0.32 -5.06 16 21 C -0.18 -3.50 9.96 -26.69 -0.27 -3.76 16 22 C -0.20 -3.96 7.35 -26.69 -0.20 -4.15 16 23 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 24 H 0.04 0.34 7.87 -51.93 -0.41 -0.07 16 25 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.49 7.87 -51.93 -0.41 0.08 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.14 1.77 8.14 -51.92 -0.42 1.34 16 30 H 0.14 1.50 8.14 -51.92 -0.42 1.08 16 31 H 0.43 7.91 8.35 -34.47 -0.29 7.63 16 32 H 0.06 1.05 7.01 -51.93 -0.36 0.68 16 33 H 0.06 1.01 7.57 -51.93 -0.39 0.62 16 34 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 37 H 0.09 1.86 7.17 -51.93 -0.37 1.49 16 38 H 0.07 1.35 8.14 -51.92 -0.42 0.92 16 LS Contribution 324.56 15.07 4.89 4.89 Total: -1.00 -32.64 324.56 -7.20 -39.84 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -6.08 Total: 8.41 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 0.56 Total: -23.09 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.71 Total: -44.92 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -2.48 Total: -43.36 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.24 Total: 15.98 kcal Atomic # 16 Polarization: 42.81 SS G_CDS: -0.56 Total: 42.25 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.64 -7.20 -39.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331784925.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.073 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds