Wall clock time and date at job start Mon Mar 30 2020 01:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99699 * 2 1 4 4 H 1.09003 * 109.46886 * 29.99839 * 3 2 1 5 5 C 1.52992 * 109.46842 * 269.99399 * 3 2 1 6 6 C 1.52997 * 109.46798 * 149.99753 * 3 2 1 7 7 S 1.81399 * 109.47185 * 299.99731 * 6 3 2 8 8 O 1.42101 * 110.54620 * 291.62872 * 7 6 3 9 9 O 1.42098 * 110.54432 * 68.37560 * 7 6 3 10 10 N 1.65604 * 104.45082 * 180.02562 * 7 6 3 11 11 C 1.46495 * 119.99943 * 64.52765 * 10 7 6 12 12 C 1.53002 * 109.46972 * 159.81795 * 11 10 7 13 13 C 1.50695 * 115.55186 * 65.63832 * 12 11 10 14 14 H 1.07997 * 120.00085 * 264.64227 * 13 12 11 15 15 C 1.37883 * 119.99811 * 84.64355 * 13 12 11 16 16 N 1.31514 * 119.99551 * 184.33107 * 15 13 12 17 17 Si 1.86795 * 120.00132 * 4.32963 * 15 13 12 18 18 H 1.48497 * 109.47095 * 94.16383 * 17 15 13 19 19 H 1.48505 * 109.46928 * 214.16058 * 17 15 13 20 20 H 1.48494 * 109.47209 * 334.15811 * 17 15 13 21 21 C 1.53005 * 117.49484 * 279.96764 * 12 11 10 22 22 C 1.53004 * 117.49817 * 211.30983 * 12 11 10 23 23 H 1.08999 * 109.47953 * 300.00370 * 1 2 3 24 24 H 1.09004 * 109.47226 * 60.00446 * 1 2 3 25 25 H 1.08999 * 109.47286 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47808 * 300.00451 * 5 3 2 27 27 H 1.09000 * 109.47193 * 60.00678 * 5 3 2 28 28 H 1.09000 * 109.46994 * 179.97438 * 5 3 2 29 29 H 1.09000 * 109.47560 * 59.99892 * 6 3 2 30 30 H 1.09007 * 109.46860 * 179.97438 * 6 3 2 31 31 H 0.96998 * 119.99796 * 244.52948 * 10 7 6 32 32 H 1.09006 * 109.47263 * 279.81280 * 11 10 7 33 33 H 1.08996 * 109.47666 * 39.81304 * 11 10 7 34 34 H 0.96999 * 119.99717 * 179.97438 * 16 15 13 35 35 H 1.08993 * 117.50219 * 359.97438 * 21 12 11 36 36 H 1.09000 * 117.49710 * 145.02605 * 21 12 11 37 37 H 1.08999 * 117.50165 * 214.98273 * 22 12 11 38 38 H 1.09009 * 117.49598 * 359.97252 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3588 1.2633 0.7213 7 16 3.1128 0.7110 2.4316 8 8 2.4089 1.6949 3.1770 9 8 2.7174 -0.6535 2.4629 10 7 4.6328 0.7116 3.0887 11 6 5.3673 1.9707 3.2345 12 6 6.4702 1.7996 4.2811 13 6 7.5703 0.8371 3.9147 14 1 7.5248 -0.1883 4.2507 15 6 8.6350 1.2656 3.1506 16 7 9.5511 0.4070 2.7592 17 14 8.7762 3.0655 2.6712 18 1 9.6322 3.7743 3.6561 19 1 9.3837 3.1717 1.3203 20 1 7.4249 3.6811 2.6561 21 6 6.0649 1.8817 5.7542 22 6 6.8524 3.0264 5.1117 23 1 -0.3635 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 2.8830 1.0774 -1.9563 27 1 1.2569 1.8014 -1.9563 28 1 2.6606 2.7673 -1.4425 29 1 4.0241 0.5694 0.2076 30 1 3.8023 2.2591 0.7209 31 1 5.0368 -0.1218 3.3771 32 1 5.8134 2.2440 2.2781 33 1 4.6824 2.7562 3.5535 34 1 10.3000 0.7084 2.2213 35 1 5.0128 2.0581 5.9777 36 1 6.5943 1.2399 6.4584 37 1 7.8995 3.1372 5.3934 38 1 6.3184 3.9555 4.9121 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331784925.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:45 Heat of formation + Delta-G solvation = -120.556532 kcal Electronic energy + Delta-G solvation = -20583.863191 eV Core-core repulsion = 17360.627982 eV Total energy + Delta-G solvation = -3223.235208 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.49427 -39.06475 -38.06308 -36.95652 -34.91334 -34.16281 -33.95813 -28.82385 -28.14310 -27.50810 -26.59964 -23.29014 -22.74238 -21.05839 -20.20967 -18.55959 -18.40865 -18.04777 -17.61977 -16.96393 -16.78389 -16.27900 -15.88224 -15.68849 -15.23402 -14.72064 -14.35132 -14.28058 -14.19473 -13.74429 -13.56430 -13.28739 -13.19816 -13.12710 -13.04824 -12.92350 -12.71909 -12.48662 -12.10562 -11.93249 -11.88331 -11.73823 -11.37748 -11.01424 -10.79203 -10.65428 -10.29507 -10.07553 -8.23358 -6.31642 -0.67789 1.42036 1.45607 1.57768 1.81879 2.43374 2.57415 2.80973 3.10475 3.20822 3.35710 3.51187 3.81511 4.00129 4.09417 4.18712 4.39088 4.40535 4.45181 4.49151 4.50080 4.61628 4.63859 4.76392 4.84360 4.90833 4.91989 5.10500 5.15209 5.24631 5.50661 5.51815 5.74525 6.06773 6.16995 6.36144 6.77177 7.38572 8.91637 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023549 B = 0.005607 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.711453 B = 4992.262448 C = 5426.501716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.410 6.410 3 C 0.082 3.918 4 H 0.089 0.911 5 C -0.163 4.163 6 C -0.621 4.621 7 S 2.617 3.383 8 O -0.990 6.990 9 O -0.985 6.985 10 N -1.108 6.108 11 C 0.149 3.851 12 C -0.033 4.033 13 C -0.482 4.482 14 H 0.032 0.968 15 C 0.021 3.979 16 N -0.949 5.949 17 Si 0.933 3.067 18 H -0.278 1.278 19 H -0.298 1.298 20 H -0.215 1.215 21 C -0.171 4.171 22 C -0.186 4.186 23 H 0.046 0.954 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.151 0.849 30 H 0.172 0.828 31 H 0.418 0.582 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.264 0.736 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.970 7.452 -7.705 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.330 6.330 3 C 0.023 3.977 4 H 0.107 0.893 5 C -0.221 4.221 6 C -0.753 4.753 7 S 2.713 3.287 8 O -0.980 6.980 9 O -0.975 6.975 10 N -0.867 5.867 11 C 0.022 3.978 12 C -0.035 4.035 13 C -0.520 4.520 14 H 0.051 0.949 15 C -0.176 4.176 16 N -0.588 5.588 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.226 1.226 20 H -0.137 1.137 21 C -0.208 4.208 22 C -0.224 4.224 23 H 0.065 0.935 24 H 0.089 0.911 25 H 0.116 0.884 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.169 0.831 30 H 0.190 0.810 31 H 0.253 0.747 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.594 7.187 -7.377 19.530 hybrid contribution 1.317 0.113 -0.416 1.386 sum -15.277 7.300 -7.792 18.638 Atomic orbital electron populations 1.23146 0.79056 1.04502 1.01513 1.88035 1.22028 1.27617 1.95348 1.21998 0.91080 0.85699 0.98926 0.89313 1.22214 1.03670 1.02753 0.93495 1.30696 1.06671 1.15770 1.22176 1.04500 0.72747 0.73573 0.77879 1.93525 1.72199 1.63264 1.69017 1.93538 1.81278 1.35108 1.87602 1.55283 1.36590 1.16161 1.78660 1.21072 0.93089 0.84249 0.99357 1.19478 0.96153 0.97645 0.90246 1.20336 1.03984 0.95700 1.31981 0.94928 1.25843 0.94837 1.02067 0.94897 1.70065 1.13720 1.36940 1.38086 0.85973 0.81109 0.80571 0.76601 1.20426 1.22572 1.13692 1.22857 0.99463 1.01888 0.96566 1.23093 1.00093 0.93244 1.05990 0.93485 0.91115 0.88361 0.91720 0.90411 0.89384 0.83070 0.80975 0.74742 0.91607 0.90115 0.92687 0.88545 0.90541 0.90421 0.87387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 10.82 113.37 1.23 1.47 16 2 O -0.41 -10.31 9.39 -142.52 -1.34 -11.65 16 3 C 0.08 1.70 2.77 30.59 0.08 1.78 16 4 H 0.09 1.56 7.79 -2.39 -0.02 1.54 16 5 C -0.16 -2.47 9.53 71.98 0.69 -1.79 16 6 C -0.62 -14.08 5.78 71.98 0.42 -13.66 16 7 S 2.62 82.44 5.25 -56.49 -0.30 82.14 16 8 O -0.99 -34.48 17.46 -127.65 -2.23 -36.71 16 9 O -0.98 -37.65 17.41 -123.49 -2.15 -39.80 16 10 N -1.11 -38.84 5.83 -187.49 -1.09 -39.93 16 11 C 0.15 5.29 5.58 86.38 0.48 5.77 16 12 C -0.03 -1.38 0.89 -52.93 -0.05 -1.43 16 13 C -0.48 -25.45 9.05 25.60 0.23 -25.21 16 14 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 15 C 0.02 1.14 5.47 84.66 0.46 1.61 16 16 N -0.95 -56.70 13.96 21.45 0.30 -56.40 16 17 Si 0.93 40.40 24.94 68.60 1.71 42.11 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.30 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.22 -7.83 5.70 99.48 0.57 -7.27 16 21 C -0.17 -6.47 9.96 30.62 0.30 -6.17 16 22 C -0.19 -6.91 7.35 30.62 0.23 -6.69 16 23 H 0.05 0.81 8.08 -2.39 -0.02 0.79 16 24 H 0.07 0.88 7.87 -2.39 -0.02 0.86 16 25 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.08 0.94 7.87 -2.39 -0.02 0.92 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.15 3.33 8.14 -2.39 -0.02 3.31 16 30 H 0.17 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.42 15.90 8.35 -96.75 -0.81 15.10 16 32 H 0.07 2.19 7.01 -2.38 -0.02 2.18 16 33 H 0.08 2.50 7.57 -2.39 -0.02 2.48 16 34 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 35 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 36 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 37 H 0.08 3.06 7.17 -2.39 -0.02 3.05 16 38 H 0.11 3.32 8.14 -2.38 -0.02 3.30 16 Total: -1.00 -72.22 324.56 -0.93 -73.15 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.10 Total: 31.40 kcal Atomic # 6 Polarization: -48.39 SS G_CDS: 4.07 Total: -44.32 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -0.79 Total: -96.33 kcal Atomic # 8 Polarization: -82.44 SS G_CDS: -5.72 Total: -88.15 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 1.71 Total: 42.11 kcal Atomic # 16 Polarization: 82.44 SS G_CDS: -0.30 Total: 82.14 kcal Total: -72.22 -0.93 -73.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331784925.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.408 kcal (2) G-P(sol) polarization free energy of solvation -72.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds