Wall clock time and date at job start Mon Mar 30 2020 01:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00278 * 2 1 4 4 H 1.08997 * 109.47090 * 329.99792 * 3 2 1 5 5 C 1.53004 * 109.47331 * 89.99798 * 3 2 1 6 6 C 1.53001 * 109.47446 * 209.99842 * 3 2 1 7 7 S 1.81395 * 109.46983 * 65.00000 * 6 3 2 8 8 O 1.42104 * 110.54652 * 68.37758 * 7 6 3 9 9 O 1.42104 * 110.54626 * 291.62472 * 7 6 3 10 10 N 1.65595 * 104.45317 * 180.02562 * 7 6 3 11 11 C 1.46505 * 119.99977 * 64.99385 * 10 7 6 12 12 C 1.53002 * 109.46901 * 159.13983 * 11 10 7 13 13 C 1.50703 * 115.55188 * 294.33082 * 12 11 10 14 14 H 1.08006 * 119.99748 * 95.26870 * 13 12 11 15 15 C 1.37880 * 120.00217 * 274.99662 * 13 12 11 16 16 N 1.31513 * 119.99735 * 355.55841 * 15 13 12 17 17 Si 1.86800 * 119.99867 * 175.55535 * 15 13 12 18 18 H 1.48497 * 109.47297 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46723 * 119.99816 * 17 15 13 20 20 H 1.48495 * 109.46936 * 239.99871 * 17 15 13 21 21 C 1.53000 * 117.49957 * 80.00538 * 12 11 10 22 22 C 1.52998 * 117.49824 * 148.66641 * 12 11 10 23 23 H 1.09002 * 109.47221 * 299.99951 * 1 2 3 24 24 H 1.09008 * 109.47152 * 60.00146 * 1 2 3 25 25 H 1.08995 * 109.47736 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46575 * 60.00159 * 5 3 2 27 27 H 1.09000 * 109.47393 * 179.97438 * 5 3 2 28 28 H 1.09001 * 109.46801 * 300.00442 * 5 3 2 29 29 H 1.09004 * 109.46952 * 305.00087 * 6 3 2 30 30 H 1.09001 * 109.47375 * 184.99704 * 6 3 2 31 31 H 0.97006 * 120.00489 * 245.00382 * 10 7 6 32 32 H 1.08999 * 109.46879 * 39.14621 * 11 10 7 33 33 H 1.08996 * 109.47680 * 279.13935 * 11 10 7 34 34 H 0.97007 * 119.99528 * 185.00583 * 16 15 13 35 35 H 1.09001 * 117.49774 * 215.00127 * 21 12 11 36 36 H 1.08993 * 117.49727 * 0.02562 * 21 12 11 37 37 H 1.09004 * 117.50046 * 359.97438 * 22 12 11 38 38 H 1.09003 * 117.50238 * 144.97193 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 3.3589 1.2632 -0.7212 7 16 3.0974 0.8544 -2.4690 8 8 2.4375 1.9208 -3.1373 9 8 2.6465 -0.4863 -2.6056 10 7 4.6189 0.8414 -3.1226 11 6 5.5954 -0.1594 -2.6854 12 6 6.6854 -0.3070 -3.7489 13 6 6.2317 -0.8712 -5.0707 14 1 5.9680 -0.2060 -5.8798 15 6 6.1586 -2.2364 -5.2490 16 7 6.5672 -3.0466 -4.2971 17 14 5.4790 -2.9352 -6.8425 18 1 5.0901 -1.8220 -7.7451 19 1 6.5181 -3.7670 -7.5010 20 1 4.2883 -3.7721 -6.5480 21 6 7.7954 0.7457 -3.7738 22 6 8.0932 -0.6695 -3.2721 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 2.8829 1.0774 1.9563 27 1 2.6615 2.7669 1.4425 28 1 1.2568 1.8014 1.9563 29 1 3.9931 0.5050 -0.2617 30 1 3.8427 2.2369 -0.6443 31 1 4.8637 1.4965 -3.7949 32 1 5.0950 -1.1172 -2.5427 33 1 6.0459 0.1589 -1.7453 34 1 6.5839 -4.0045 -4.4495 35 1 8.1975 1.0302 -4.7461 36 1 7.7494 1.5431 -3.0322 37 1 8.2430 -0.8025 -2.2006 38 1 8.6912 -1.3163 -3.9141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331784930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:47 Heat of formation + Delta-G solvation = -97.215907 kcal Electronic energy + Delta-G solvation = -20578.645025 eV Core-core repulsion = 17356.421942 eV Total energy + Delta-G solvation = -3222.223083 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.55997 -37.05641 -36.54819 -35.40055 -33.28545 -33.01732 -31.85663 -27.94674 -26.65536 -25.93732 -24.80949 -21.87220 -21.11630 -19.33851 -18.78294 -17.32486 -16.92492 -16.57457 -16.19268 -15.44009 -15.15738 -14.80521 -14.55923 -14.13368 -13.50876 -13.39951 -13.18298 -12.89371 -12.70269 -12.52590 -12.18180 -11.99854 -11.69825 -11.57624 -11.43350 -11.19568 -11.04904 -10.90449 -10.85751 -10.53811 -10.44330 -10.19998 -9.81503 -9.48770 -9.10780 -8.56202 -8.39911 -8.11983 -5.99295 -4.06253 0.67471 3.26377 3.34321 3.44277 3.46551 3.47466 4.14330 4.45127 4.46144 4.59435 4.71925 4.91575 5.15035 5.25353 5.25936 5.29424 5.33021 5.41496 5.43585 5.61279 5.73730 5.90331 5.90976 6.24372 6.28869 6.36675 6.51208 6.71015 6.94648 7.06005 7.10262 7.41851 7.59113 7.74765 7.92048 8.42558 8.94182 9.60380 11.08656 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021700 B = 0.005674 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.039982 B = 4933.171742 C = 5461.057509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.377 6.377 3 C 0.095 3.905 4 H 0.073 0.927 5 C -0.165 4.165 6 C -0.641 4.641 7 S 2.610 3.390 8 O -0.976 6.976 9 O -0.934 6.934 10 N -1.097 6.097 11 C 0.156 3.844 12 C 0.033 3.967 13 C -0.492 4.492 14 H 0.060 0.940 15 C 0.072 3.928 16 N -0.878 5.878 17 Si 0.888 3.112 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.281 1.281 21 C -0.212 4.212 22 C -0.145 4.145 23 H 0.043 0.957 24 H 0.045 0.955 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.414 0.586 32 H 0.083 0.917 33 H 0.032 0.968 34 H 0.260 0.740 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.864 9.252 10.875 15.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.296 6.296 3 C 0.036 3.964 4 H 0.091 0.909 5 C -0.224 4.224 6 C -0.768 4.768 7 S 2.700 3.300 8 O -0.966 6.966 9 O -0.924 6.924 10 N -0.857 5.857 11 C 0.030 3.970 12 C 0.031 3.969 13 C -0.530 4.530 14 H 0.078 0.922 15 C -0.131 4.131 16 N -0.515 5.515 17 Si 0.716 3.284 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.207 1.207 21 C -0.249 4.249 22 C -0.184 4.184 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.112 0.888 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.249 0.751 32 H 0.102 0.898 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.655 8.562 10.648 15.661 hybrid contribution 0.178 0.160 -0.458 0.517 sum -7.477 8.722 10.189 15.356 Atomic orbital electron populations 1.22904 0.80499 1.03638 1.00025 1.88080 1.20210 1.26253 1.95056 1.21669 0.91737 0.85883 0.97140 0.90938 1.22214 1.02663 1.01954 0.95534 1.30870 1.05133 1.12904 1.27872 1.04937 0.73786 0.74801 0.76452 1.93548 1.73576 1.58104 1.71416 1.93626 1.79272 1.35278 1.84221 1.55211 1.32035 1.44170 1.54323 1.20989 0.90695 0.90251 0.95030 1.18955 0.85755 0.96836 0.95322 1.20378 1.45411 0.91088 0.96081 0.92176 1.24956 0.94662 0.97111 0.96379 1.69975 1.46017 1.03353 1.32110 0.86593 0.78982 0.79244 0.83565 1.19691 1.21123 1.20732 1.23024 1.08918 0.92197 1.00809 1.22496 1.02161 0.95607 0.98091 0.93807 0.93655 0.88816 0.91176 0.91235 0.91998 0.84022 0.84120 0.75115 0.89844 0.95029 0.92994 0.90382 0.91714 0.91883 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.37 16 2 O -0.38 -5.38 9.68 -36.20 -0.35 -5.73 16 3 C 0.10 1.15 2.72 -26.73 -0.07 1.08 16 4 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 5 C -0.17 -1.53 9.53 37.16 0.35 -1.17 16 6 C -0.64 -8.11 5.76 37.16 0.21 -7.89 16 7 S 2.61 45.76 5.32 -107.50 -0.57 45.19 16 8 O -0.98 -18.53 18.08 -57.54 -1.04 -19.57 16 9 O -0.93 -20.53 16.96 -59.91 -1.02 -21.55 16 10 N -1.10 -20.36 5.77 -10.61 -0.06 -20.42 16 11 C 0.16 3.26 6.00 -4.04 -0.02 3.24 16 12 C 0.03 0.78 1.49 -155.66 -0.23 0.55 16 13 C -0.49 -13.20 8.75 -34.44 -0.30 -13.50 16 14 H 0.06 1.62 7.82 -52.48 -0.41 1.21 16 15 C 0.07 2.00 5.43 -17.82 -0.10 1.90 16 16 N -0.88 -24.83 12.65 55.43 0.70 -24.13 16 17 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 C -0.21 -4.31 9.96 -26.69 -0.27 -4.58 16 22 C -0.14 -3.24 9.14 -26.69 -0.24 -3.48 16 23 H 0.04 0.36 7.87 -51.93 -0.41 -0.05 16 24 H 0.04 0.47 8.09 -51.92 -0.42 0.05 16 25 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.49 7.87 -51.93 -0.41 0.08 16 29 H 0.14 1.73 8.14 -51.92 -0.42 1.31 16 30 H 0.14 1.33 8.14 -51.92 -0.42 0.91 16 31 H 0.41 7.34 8.66 -34.47 -0.30 7.04 16 32 H 0.08 1.99 7.59 -51.93 -0.39 1.59 16 33 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 34 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 35 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 334.28 15.07 5.04 5.04 Total: -1.00 -33.47 334.28 -8.00 -41.47 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.10 Total: 5.46 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 0.43 Total: -22.48 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.64 Total: -44.56 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -2.41 Total: -46.85 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 45.76 SS G_CDS: -0.57 Total: 45.19 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.47 -8.00 -41.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331784930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.744 kcal (2) G-P(sol) polarization free energy of solvation -33.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds