Wall clock time and date at job start Mon Mar 30 2020 01:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00278 * 2 1 4 4 H 1.08997 * 109.47090 * 329.99792 * 3 2 1 5 5 C 1.53004 * 109.47331 * 89.99798 * 3 2 1 6 6 C 1.53001 * 109.47446 * 209.99842 * 3 2 1 7 7 S 1.81395 * 109.46983 * 65.00000 * 6 3 2 8 8 O 1.42104 * 110.54652 * 68.37758 * 7 6 3 9 9 O 1.42104 * 110.54626 * 291.62472 * 7 6 3 10 10 N 1.65595 * 104.45317 * 180.02562 * 7 6 3 11 11 C 1.46505 * 119.99977 * 64.99385 * 10 7 6 12 12 C 1.53002 * 109.46901 * 159.13983 * 11 10 7 13 13 C 1.50703 * 115.55188 * 294.33082 * 12 11 10 14 14 H 1.08006 * 119.99748 * 95.26870 * 13 12 11 15 15 C 1.37880 * 120.00217 * 274.99662 * 13 12 11 16 16 N 1.31513 * 119.99735 * 355.55841 * 15 13 12 17 17 Si 1.86800 * 119.99867 * 175.55535 * 15 13 12 18 18 H 1.48497 * 109.47297 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46723 * 119.99816 * 17 15 13 20 20 H 1.48495 * 109.46936 * 239.99871 * 17 15 13 21 21 C 1.53000 * 117.49957 * 80.00538 * 12 11 10 22 22 C 1.52998 * 117.49824 * 148.66641 * 12 11 10 23 23 H 1.09002 * 109.47221 * 299.99951 * 1 2 3 24 24 H 1.09008 * 109.47152 * 60.00146 * 1 2 3 25 25 H 1.08995 * 109.47736 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46575 * 60.00159 * 5 3 2 27 27 H 1.09000 * 109.47393 * 179.97438 * 5 3 2 28 28 H 1.09001 * 109.46801 * 300.00442 * 5 3 2 29 29 H 1.09004 * 109.46952 * 305.00087 * 6 3 2 30 30 H 1.09001 * 109.47375 * 184.99704 * 6 3 2 31 31 H 0.97006 * 120.00489 * 245.00382 * 10 7 6 32 32 H 1.08999 * 109.46879 * 39.14621 * 11 10 7 33 33 H 1.08996 * 109.47680 * 279.13935 * 11 10 7 34 34 H 0.97007 * 119.99528 * 185.00583 * 16 15 13 35 35 H 1.09001 * 117.49774 * 215.00127 * 21 12 11 36 36 H 1.08993 * 117.49727 * 0.02562 * 21 12 11 37 37 H 1.09004 * 117.50046 * 359.97438 * 22 12 11 38 38 H 1.09003 * 117.50238 * 144.97193 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 3.3589 1.2632 -0.7212 7 16 3.0974 0.8544 -2.4690 8 8 2.4375 1.9208 -3.1373 9 8 2.6465 -0.4863 -2.6056 10 7 4.6189 0.8414 -3.1226 11 6 5.5954 -0.1594 -2.6854 12 6 6.6854 -0.3070 -3.7489 13 6 6.2317 -0.8712 -5.0707 14 1 5.9680 -0.2060 -5.8798 15 6 6.1586 -2.2364 -5.2490 16 7 6.5672 -3.0466 -4.2971 17 14 5.4790 -2.9352 -6.8425 18 1 5.0901 -1.8220 -7.7451 19 1 6.5181 -3.7670 -7.5010 20 1 4.2883 -3.7721 -6.5480 21 6 7.7954 0.7457 -3.7738 22 6 8.0932 -0.6695 -3.2721 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 2.8829 1.0774 1.9563 27 1 2.6615 2.7669 1.4425 28 1 1.2568 1.8014 1.9563 29 1 3.9931 0.5050 -0.2617 30 1 3.8427 2.2369 -0.6443 31 1 4.8637 1.4965 -3.7949 32 1 5.0950 -1.1172 -2.5427 33 1 6.0459 0.1589 -1.7453 34 1 6.5839 -4.0045 -4.4495 35 1 8.1975 1.0302 -4.7461 36 1 7.7494 1.5431 -3.0322 37 1 8.2430 -0.8025 -2.2006 38 1 8.6912 -1.3163 -3.9141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331784930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:47 Heat of formation + Delta-G solvation = -122.829416 kcal Electronic energy + Delta-G solvation = -20579.755710 eV Core-core repulsion = 17356.421942 eV Total energy + Delta-G solvation = -3223.333768 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.47741 -38.76340 -38.03479 -36.89786 -34.83809 -33.96058 -33.87634 -28.79956 -27.83046 -27.51579 -26.58610 -22.89124 -22.69271 -21.15116 -20.18550 -18.72732 -18.13461 -17.95245 -17.59499 -16.93297 -16.54528 -16.21098 -15.91085 -15.66325 -15.21513 -14.75540 -14.22859 -14.03086 -13.74220 -13.68584 -13.59813 -13.23679 -13.08541 -13.02100 -12.91204 -12.87805 -12.82743 -12.48498 -12.35527 -11.92684 -11.89715 -11.72030 -11.30445 -10.98206 -10.72412 -10.36509 -10.16212 -9.85737 -8.08711 -6.18193 -0.65564 1.35351 1.41680 1.48448 1.89123 2.42384 2.58697 2.89322 3.20813 3.36371 3.50439 3.59684 3.82144 4.07944 4.22112 4.28453 4.38240 4.47857 4.59176 4.63006 4.65802 4.72857 4.78213 4.78222 4.83941 4.93856 5.09984 5.26533 5.37549 5.38264 5.70727 5.79917 5.85190 6.08766 6.29507 6.44851 6.87680 7.49510 8.98493 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021700 B = 0.005674 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.039982 B = 4933.171742 C = 5461.057509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.411 6.411 3 C 0.079 3.921 4 H 0.083 0.917 5 C -0.160 4.160 6 C -0.609 4.609 7 S 2.604 3.396 8 O -0.998 6.998 9 O -0.993 6.993 10 N -1.101 6.101 11 C 0.166 3.834 12 C -0.002 4.002 13 C -0.501 4.501 14 H 0.049 0.951 15 C 0.025 3.975 16 N -0.903 5.903 17 Si 0.933 3.067 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.290 1.290 21 C -0.179 4.179 22 C -0.151 4.151 23 H 0.073 0.927 24 H 0.043 0.957 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.152 0.848 30 H 0.184 0.816 31 H 0.417 0.583 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.258 0.742 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.692 11.465 12.808 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.330 6.330 3 C 0.020 3.980 4 H 0.101 0.899 5 C -0.219 4.219 6 C -0.742 4.742 7 S 2.701 3.299 8 O -0.988 6.988 9 O -0.983 6.983 10 N -0.860 5.860 11 C 0.040 3.960 12 C -0.004 4.004 13 C -0.539 4.539 14 H 0.067 0.933 15 C -0.175 4.175 16 N -0.541 5.541 17 Si 0.759 3.241 18 H -0.193 1.193 19 H -0.201 1.201 20 H -0.216 1.216 21 C -0.216 4.216 22 C -0.190 4.190 23 H 0.092 0.908 24 H 0.061 0.939 25 H 0.113 0.887 26 H 0.086 0.914 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.170 0.830 30 H 0.202 0.798 31 H 0.252 0.748 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.480 10.771 12.499 18.116 hybrid contribution 0.085 -0.457 -1.007 1.109 sum -7.395 10.315 11.492 17.121 Atomic orbital electron populations 1.23112 0.79259 1.04334 1.01371 1.88037 1.21847 1.27809 1.95354 1.22038 0.91222 0.85531 0.99217 0.89897 1.22207 1.03701 1.02926 0.93033 1.30631 1.06647 1.15532 1.21369 1.04813 0.73054 0.73354 0.78655 1.93511 1.73892 1.57882 1.73548 1.93559 1.80195 1.38286 1.86256 1.55083 1.31613 1.43736 1.55532 1.20722 0.89924 0.89425 0.95969 1.19082 0.87095 0.99435 0.94818 1.20708 1.44483 0.91076 0.97610 0.93282 1.25564 0.95408 0.97809 0.98735 1.70050 1.47518 1.03259 1.33300 0.85892 0.78269 0.78664 0.81235 1.19345 1.20057 1.21636 1.23029 1.05225 0.91907 1.01466 1.22418 1.00997 0.96879 0.98704 0.90844 0.93879 0.88676 0.91409 0.88943 0.90654 0.82988 0.79805 0.74837 0.93806 0.90828 0.93244 0.90815 0.87846 0.89907 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 10.82 113.37 1.23 1.53 16 2 O -0.41 -11.17 9.68 -148.05 -1.43 -12.61 16 3 C 0.08 1.68 2.72 30.60 0.08 1.76 16 4 H 0.08 1.57 7.79 -2.39 -0.02 1.55 16 5 C -0.16 -2.28 9.53 71.98 0.69 -1.60 16 6 C -0.61 -13.41 5.76 71.98 0.41 -12.99 16 7 S 2.60 89.71 5.32 -56.49 -0.30 89.41 16 8 O -1.00 -37.35 18.08 -127.65 -2.31 -39.66 16 9 O -0.99 -45.01 16.96 -125.38 -2.13 -47.14 16 10 N -1.10 -39.75 5.77 -187.48 -1.08 -40.83 16 11 C 0.17 6.76 6.00 86.38 0.52 7.28 16 12 C 0.00 -0.11 1.49 -52.93 -0.08 -0.19 16 13 C -0.50 -27.25 8.75 25.60 0.22 -27.02 16 14 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 15 C 0.03 1.42 5.43 84.66 0.46 1.88 16 16 N -0.90 -52.35 12.65 21.45 0.27 -52.08 16 17 Si 0.93 45.57 29.54 68.60 2.03 47.60 16 18 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 20 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 21 C -0.18 -6.83 9.96 30.62 0.30 -6.52 16 22 C -0.15 -6.60 9.14 30.62 0.28 -6.32 16 23 H 0.07 1.03 7.87 -2.39 -0.02 1.01 16 24 H 0.04 0.87 8.09 -2.38 -0.02 0.85 16 25 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 0.89 7.87 -2.39 -0.02 0.87 16 29 H 0.15 3.19 8.14 -2.39 -0.02 3.17 16 30 H 0.18 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.42 14.35 8.66 -96.74 -0.84 13.51 16 32 H 0.04 2.12 7.59 -2.39 -0.02 2.10 16 33 H 0.07 2.35 8.09 -2.39 -0.02 2.33 16 34 H 0.26 14.43 8.32 -92.70 -0.77 13.66 16 35 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 38 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -75.05 334.28 -0.63 -75.68 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.20 Total: 21.83 kcal Atomic # 6 Polarization: -46.31 SS G_CDS: 4.12 Total: -42.20 kcal Atomic # 7 Polarization: -92.10 SS G_CDS: -0.81 Total: -92.91 kcal Atomic # 8 Polarization: -93.54 SS G_CDS: -5.87 Total: -99.40 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: 89.71 SS G_CDS: -0.30 Total: 89.41 kcal Total: -75.05 -0.63 -75.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331784930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.152 kcal (2) G-P(sol) polarization free energy of solvation -75.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds