Wall clock time and date at job start Mon Mar 30 2020 01:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99801 * 2 1 4 4 C 1.53002 * 109.46829 * 179.97438 * 3 2 1 5 5 S 1.81397 * 115.55516 * 318.30479 * 4 3 2 6 6 O 1.42103 * 110.54418 * 289.59818 * 5 4 3 7 7 O 1.42101 * 110.54837 * 152.84389 * 5 4 3 8 8 N 1.65607 * 104.44633 * 41.21963 * 5 4 3 9 9 C 1.46499 * 120.00184 * 262.36124 * 8 5 4 10 10 C 1.46502 * 119.99846 * 82.36597 * 8 5 4 11 11 H 1.09002 * 109.47244 * 352.57300 * 10 8 5 12 12 C 1.53002 * 109.47148 * 112.57345 * 10 8 5 13 13 C 1.50705 * 109.46939 * 232.57510 * 10 8 5 14 14 H 1.08000 * 119.99920 * 354.40676 * 13 10 8 15 15 C 1.37873 * 119.99889 * 174.41253 * 13 10 8 16 16 N 1.31516 * 120.00043 * 359.97438 * 15 13 10 17 17 Si 1.86802 * 119.99853 * 180.02562 * 15 13 10 18 18 H 1.48493 * 109.47150 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47219 * 119.99655 * 17 15 13 20 20 H 1.48500 * 109.46867 * 239.99346 * 17 15 13 21 21 C 1.53008 * 117.51448 * 104.00732 * 4 3 2 22 22 C 1.52999 * 59.99930 * 107.47872 * 21 4 3 23 23 H 1.09000 * 109.47523 * 300.00460 * 1 2 3 24 24 H 1.09003 * 109.46817 * 60.00202 * 1 2 3 25 25 H 1.08998 * 109.46962 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47207 * 59.99857 * 3 2 1 27 27 H 1.08996 * 109.47185 * 299.99365 * 3 2 1 28 28 H 1.08997 * 109.47266 * 269.99874 * 9 8 5 29 29 H 1.09005 * 109.46842 * 30.00197 * 9 8 5 30 30 H 1.09000 * 109.46957 * 149.99923 * 9 8 5 31 31 H 1.09000 * 109.47020 * 179.97438 * 12 10 8 32 32 H 1.08994 * 109.47019 * 299.99709 * 12 10 8 33 33 H 1.08996 * 109.47106 * 60.00321 * 12 10 8 34 34 H 0.97001 * 120.00168 * 179.97438 * 16 15 13 35 35 H 1.08997 * 117.49475 * 214.96659 * 21 4 3 36 36 H 1.08993 * 117.50193 * 359.97438 * 21 4 3 37 37 H 1.08991 * 117.50283 * 252.50524 * 22 21 4 38 38 H 1.09007 * 117.49545 * 107.48609 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 16 4.2185 -0.0951 1.0897 6 8 4.0590 0.2730 2.4529 7 8 5.4697 -0.5540 0.5964 8 7 3.2032 -1.3887 0.8945 9 6 2.1294 -1.6296 1.8615 10 6 3.3790 -2.2924 -0.2451 11 1 4.1325 -1.8849 -0.9191 12 6 3.8326 -3.6646 0.2572 13 6 2.0711 -2.4338 -0.9804 14 1 1.1764 -1.9773 -0.5836 15 6 2.0168 -3.1461 -2.1597 16 7 3.1064 -3.7017 -2.6431 17 14 0.3958 -3.3207 -3.0715 18 1 -0.6715 -2.6080 -2.3246 19 1 0.5262 -2.7345 -4.4297 20 1 0.0442 -4.7590 -3.1849 21 6 4.2666 1.4561 -1.3158 22 6 4.3460 2.4706 -0.1733 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6887 1.8464 -0.8900 28 1 2.4978 -2.2720 2.6612 29 1 1.7990 -0.6796 2.2816 30 1 1.2922 -2.1163 1.3610 31 1 3.9630 -4.3370 -0.5907 32 1 4.7785 -3.5622 0.7890 33 1 3.0791 -4.0721 0.9311 34 1 3.0682 -4.2031 -3.4726 35 1 5.1580 0.8656 -1.5273 36 1 3.6610 1.7203 -2.1826 37 1 3.7928 3.4026 -0.2885 38 1 5.2898 2.5476 0.3667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331792849.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:26 Heat of formation + Delta-G solvation = -66.353090 kcal Electronic energy + Delta-G solvation = -22235.289080 eV Core-core repulsion = 19014.404309 eV Total energy + Delta-G solvation = -3220.884771 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.21493 -36.70967 -36.30263 -35.65508 -35.19616 -32.35794 -28.95212 -28.10875 -25.25085 -25.14262 -24.97514 -22.46749 -21.71173 -20.55089 -17.85771 -16.92079 -16.66510 -16.35362 -15.68573 -15.28939 -15.23188 -14.83877 -14.33548 -13.76450 -13.34549 -13.11212 -12.59305 -12.41466 -12.29390 -11.77966 -11.67229 -11.64492 -11.35860 -11.23958 -11.18463 -10.99153 -10.88143 -10.81501 -10.70185 -10.34507 -10.31723 -10.10171 -10.02003 -9.73634 -9.17030 -8.88295 -8.35010 -7.60393 -5.94133 -3.94941 1.03348 3.20514 3.28688 3.36091 3.37835 3.67565 4.13732 4.41461 4.47347 4.63118 4.90525 5.00527 5.26284 5.39059 5.47048 5.50285 5.60091 5.68672 5.75578 5.79949 5.94619 5.98054 6.12207 6.15647 6.45812 6.58579 6.89091 7.03360 7.07074 7.27983 7.55019 7.66415 7.83757 7.96322 8.19362 8.49708 9.11313 9.67022 11.13733 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.009139 C = 0.008271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.514807 B = 3063.085429 C = 3384.384728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.336 6.336 3 C 0.115 3.885 4 C -0.646 4.646 5 S 2.642 3.358 6 O -0.977 6.977 7 O -0.960 6.960 8 N -0.953 5.953 9 C 0.124 3.876 10 C 0.278 3.722 11 H 0.050 0.950 12 C -0.142 4.142 13 C -0.496 4.496 14 H 0.082 0.918 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.888 3.112 18 H -0.275 1.275 19 H -0.289 1.289 20 H -0.288 1.288 21 C -0.108 4.108 22 C -0.134 4.134 23 H 0.031 0.969 24 H 0.033 0.967 25 H 0.092 0.908 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.030 0.970 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.014 0.986 33 H 0.031 0.969 34 H 0.258 0.742 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.994 10.113 3.932 11.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.253 6.253 3 C 0.037 3.963 4 C -0.732 4.732 5 S 2.731 3.269 6 O -0.967 6.967 7 O -0.950 6.950 8 N -0.792 5.792 9 C -0.022 4.022 10 C 0.175 3.825 11 H 0.068 0.932 12 C -0.201 4.201 13 C -0.535 4.535 14 H 0.100 0.900 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.717 3.283 18 H -0.200 1.200 19 H -0.215 1.215 20 H -0.214 1.214 21 C -0.146 4.146 22 C -0.172 4.172 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.111 0.889 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.033 0.967 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.094 9.895 4.323 10.999 hybrid contribution -1.729 0.363 -1.227 2.151 sum -3.823 10.258 3.096 11.377 Atomic orbital electron populations 1.22669 0.82160 1.03118 0.98613 1.88604 1.18559 1.23254 1.94900 1.21399 0.87294 0.87463 1.00129 1.32305 1.04270 1.17939 1.18665 1.03904 0.74556 0.74450 0.73949 1.93491 1.87248 1.84628 1.31379 1.93560 1.40568 1.78248 1.82641 1.57005 1.46449 1.39295 1.36462 1.21050 0.91377 0.99465 0.90313 1.18543 0.97161 0.85607 0.81215 0.93236 1.22030 0.96852 1.00623 1.00642 1.21670 0.95479 1.30689 1.05706 0.89996 1.24930 0.95864 0.96232 0.97433 1.69940 1.26896 1.35653 1.21099 0.86618 0.84397 0.77506 0.79740 1.20010 1.21528 1.21448 1.22872 1.01408 1.00077 0.90258 1.22780 0.99666 0.91973 1.02805 0.95039 0.94817 0.88928 0.93150 0.93004 0.95133 0.93359 0.90470 0.90076 0.96710 0.95003 0.93183 0.86569 0.87321 0.87416 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.99 101.05 1.01 1.46 16 2 O -0.34 -5.84 3.43 -35.23 -0.12 -5.96 16 3 C 0.12 1.74 6.01 37.16 0.22 1.96 16 4 C -0.65 -10.51 2.70 -90.61 -0.24 -10.75 16 5 S 2.64 53.13 5.44 -107.50 -0.58 52.54 16 6 O -0.98 -20.66 16.82 -57.54 -0.97 -21.63 16 7 O -0.96 -21.89 16.29 -57.54 -0.94 -22.82 16 8 N -0.95 -20.21 1.64 -115.85 -0.19 -20.40 16 9 C 0.12 2.33 7.58 59.85 0.45 2.78 16 10 C 0.28 6.77 2.33 -69.08 -0.16 6.60 16 11 H 0.05 1.34 7.28 -51.93 -0.38 0.96 16 12 C -0.14 -3.44 9.13 37.16 0.34 -3.10 16 13 C -0.50 -12.28 6.95 -34.44 -0.24 -12.52 16 14 H 0.08 1.90 3.02 -52.49 -0.16 1.74 16 15 C 0.06 1.46 5.33 -17.82 -0.09 1.36 16 16 N -0.90 -24.79 11.74 55.43 0.65 -24.14 16 17 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 21 C -0.11 -1.61 9.81 -26.73 -0.26 -1.87 16 22 C -0.13 -1.70 10.02 -26.73 -0.27 -1.97 16 23 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.09 1.42 7.03 -51.93 -0.37 1.05 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.71 7.97 -51.93 -0.41 0.30 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.82 7.17 -51.93 -0.37 0.44 16 30 H 0.08 1.43 6.07 -51.93 -0.32 1.12 16 31 H 0.08 2.13 6.53 -51.93 -0.34 1.79 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.03 0.72 7.86 -51.93 -0.41 0.31 16 34 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.12 1.84 7.69 -51.93 -0.40 1.44 16 36 H 0.11 1.46 8.10 -51.93 -0.42 1.04 16 37 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 310.10 15.07 4.67 4.67 Total: -1.00 -30.85 310.10 -7.41 -38.26 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.66 Total: 0.28 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 0.76 Total: -16.04 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.46 Total: -44.53 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -2.03 Total: -50.42 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 53.13 SS G_CDS: -0.58 Total: 52.54 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.85 -7.41 -38.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331792849.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.098 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds