Wall clock time and date at job start Mon Mar 30 2020 02:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99958 * 2 1 4 4 C 1.52999 * 109.46662 * 81.57254 * 3 2 1 5 5 O 1.42895 * 112.85339 * 50.45549 * 4 3 2 6 6 C 1.53781 * 113.61457 * 279.14877 * 4 3 2 7 7 C 1.53773 * 87.08640 * 220.02363 * 6 4 3 8 8 C 1.53778 * 87.07887 * 25.43185 * 7 6 4 9 9 S 1.65598 * 119.99937 * 180.02562 * 2 1 3 10 10 O 1.42103 * 104.27864 * 328.76484 * 9 2 1 11 11 O 1.42093 * 104.27671 * 200.90743 * 9 2 1 12 12 C 1.81401 * 104.45032 * 84.83252 * 9 2 1 13 13 C 1.53002 * 109.46932 * 182.66071 * 12 9 2 14 14 C 1.50701 * 109.46720 * 179.97438 * 13 12 9 15 15 H 1.07999 * 120.00485 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99797 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99961 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99871 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47236 * 60.00116 * 18 16 14 20 20 H 1.48502 * 109.46922 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46740 * 299.99551 * 18 16 14 22 22 H 1.08997 * 109.46863 * 269.99586 * 1 2 3 23 23 H 1.09002 * 109.47378 * 29.99402 * 1 2 3 24 24 H 1.09000 * 109.47320 * 149.99591 * 1 2 3 25 25 H 1.09000 * 109.46815 * 201.56859 * 3 2 1 26 26 H 1.09000 * 109.46945 * 321.57566 * 3 2 1 27 27 H 0.96694 * 114.00317 * 309.67140 * 5 4 3 28 28 H 1.09007 * 113.61435 * 334.57341 * 6 4 3 29 29 H 1.09000 * 113.61625 * 105.47188 * 6 4 3 30 30 H 1.09007 * 113.61383 * 270.88564 * 7 6 4 31 31 H 1.08997 * 113.61865 * 139.98340 * 7 6 4 32 32 H 1.09002 * 113.61790 * 220.02260 * 8 7 6 33 33 H 1.09000 * 113.61534 * 89.12024 * 8 7 6 34 34 H 1.08998 * 109.47170 * 302.66113 * 12 9 2 35 35 H 1.09001 * 109.47038 * 62.66334 * 12 9 2 36 36 H 1.08998 * 109.47228 * 300.00007 * 13 12 9 37 37 H 1.09001 * 109.47044 * 60.00267 * 13 12 9 38 38 H 0.97002 * 120.00231 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2694 1.8160 1.4270 5 8 2.7346 0.8482 2.3697 6 6 0.9915 2.5469 1.8715 7 6 1.9103 3.5746 2.5529 8 6 2.9869 3.1722 1.5312 9 16 2.2930 -1.4341 -0.0006 10 8 1.4485 -2.3267 0.7131 11 8 3.5822 -1.0946 0.4909 12 6 2.3823 -1.9045 -1.7503 13 6 3.0754 -3.2625 -1.8786 14 6 3.1490 -3.6535 -3.3321 15 1 2.7425 -2.9987 -4.0888 16 6 3.7353 -4.8472 -3.6961 17 7 4.2298 -5.6447 -2.7747 18 14 3.8272 -5.3315 -5.4979 19 1 4.6010 -4.3089 -6.2465 20 1 4.4987 -6.6502 -5.6223 21 1 2.4543 -5.4210 -6.0570 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3634 0.8900 -0.5137 24 1 -0.3634 -0.8899 -0.5139 25 1 3.2068 1.1055 -0.3778 26 1 1.6819 1.9859 -0.6387 27 1 2.2712 0.0008 2.3247 28 1 0.4138 2.9589 1.0439 29 1 0.3820 1.9747 2.5709 30 1 2.1662 3.3176 3.5809 31 1 1.5694 4.6042 2.4453 32 1 3.9885 3.1046 1.9559 33 1 2.9548 3.7550 0.6106 34 1 1.3747 -1.9706 -2.1607 35 1 2.9499 -1.1535 -2.2999 36 1 4.0830 -3.1963 -1.4683 37 1 2.5078 -4.0134 -1.3290 38 1 4.6426 -6.4843 -3.0308 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332080413.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:09 Heat of formation + Delta-G solvation = -128.566079 kcal Electronic energy + Delta-G solvation = -20614.410001 eV Core-core repulsion = 17390.827473 eV Total energy + Delta-G solvation = -3223.582528 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.73192 -38.20519 -37.08767 -36.61991 -35.91445 -35.53109 -33.14127 -29.71823 -27.63213 -26.64214 -26.45983 -23.77171 -23.18883 -20.58176 -19.91446 -19.12010 -18.27776 -18.01252 -17.44260 -16.82074 -16.54467 -16.30282 -16.04034 -15.54251 -15.04791 -14.67569 -14.43411 -14.34419 -13.99887 -13.74806 -13.52826 -13.19218 -13.17096 -13.10840 -12.91549 -12.80664 -12.63568 -12.31448 -12.25068 -12.14781 -12.03963 -11.76603 -11.70749 -11.42660 -11.15311 -10.74828 -10.65411 -9.82443 -8.27127 -6.42039 -0.73679 1.40207 1.43926 1.52203 1.71032 2.37309 2.78857 3.05927 3.07570 3.18064 3.58287 3.62691 3.84519 3.94682 4.00124 4.08671 4.09109 4.46052 4.54847 4.69508 4.71409 4.74538 4.85044 4.87358 4.96455 5.02344 5.08290 5.17003 5.22958 5.25360 5.28082 5.47441 5.63373 5.66348 6.04216 6.56847 6.71492 7.28469 8.84956 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.039087 B = 0.004170 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.176516 B = 6712.504465 C = 6743.673027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.997 5.997 3 C 0.099 3.901 4 C 0.066 3.934 5 O -0.554 6.554 6 C -0.152 4.152 7 C -0.133 4.133 8 C -0.125 4.125 9 S 2.603 3.397 10 O -0.992 6.992 11 O -0.981 6.981 12 C -0.590 4.590 13 C 0.020 3.980 14 C -0.542 4.542 15 H 0.076 0.924 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.975 3.025 19 H -0.263 1.263 20 H -0.284 1.284 21 H -0.262 1.262 22 H 0.059 0.941 23 H 0.110 0.890 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.132 0.868 27 H 0.365 0.635 28 H 0.118 0.882 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.125 0.875 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.003 0.997 37 H 0.005 0.995 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.485 20.205 3.919 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.837 5.837 3 C -0.026 4.026 4 C 0.023 3.977 5 O -0.359 6.359 6 C -0.190 4.190 7 C -0.170 4.170 8 C -0.162 4.162 9 S 2.700 3.300 10 O -0.982 6.982 11 O -0.971 6.971 12 C -0.722 4.722 13 C -0.019 4.019 14 C -0.581 4.581 15 H 0.094 0.906 16 C -0.203 4.203 17 N -0.574 5.574 18 Si 0.798 3.202 19 H -0.187 1.187 20 H -0.210 1.210 21 H -0.186 1.186 22 H 0.077 0.923 23 H 0.129 0.871 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.150 0.850 27 H 0.212 0.788 28 H 0.136 0.864 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.143 0.857 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.698 20.120 4.910 22.463 hybrid contribution -0.029 -1.361 -1.175 1.798 sum -8.727 18.758 3.736 21.023 Atomic orbital electron populations 1.21802 0.76519 1.04848 1.03050 1.57363 1.16228 1.20243 1.89842 1.22217 0.97686 0.85459 0.97222 1.23085 0.97148 0.89047 0.88402 1.86481 1.64354 1.25850 1.59246 1.23624 0.95977 0.97754 1.01613 1.22719 0.96373 0.99955 0.97963 1.23122 0.98718 0.92759 1.01637 1.05118 0.73178 0.73309 0.78370 1.93511 1.68240 1.65544 1.70951 1.93560 1.41855 1.82699 1.78996 1.30391 1.10822 1.07647 1.23330 1.18812 0.94417 0.89649 0.98977 1.21497 1.39142 1.05055 0.92404 0.90556 1.26148 0.94537 0.96339 1.03229 1.70099 1.39454 1.12107 1.35744 0.85348 0.79046 0.77533 0.78237 1.18710 1.20953 1.18627 0.92255 0.87121 0.91165 0.90068 0.85032 0.78790 0.86423 0.91889 0.91716 0.89071 0.92168 0.85703 0.84087 0.84278 0.97820 0.97623 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.40 9.82 127.77 1.25 2.66 16 2 N -1.00 -23.33 2.51 -539.12 -1.35 -24.69 16 3 C 0.10 1.96 5.01 86.38 0.43 2.39 16 4 C 0.07 1.42 1.54 -10.27 -0.02 1.41 16 5 O -0.55 -17.21 12.65 -140.44 -1.78 -18.99 16 6 C -0.15 -2.32 7.06 31.12 0.22 -2.10 16 7 C -0.13 -2.05 8.02 31.12 0.25 -1.80 16 8 C -0.12 -2.16 7.47 31.12 0.23 -1.92 16 9 S 2.60 92.17 4.55 -56.49 -0.26 91.91 16 10 O -0.99 -40.90 17.29 -127.65 -2.21 -43.10 16 11 O -0.98 -40.81 15.48 -122.92 -1.90 -42.71 16 12 C -0.59 -22.26 6.12 71.98 0.44 -21.82 16 13 C 0.02 1.07 4.98 29.85 0.15 1.22 16 14 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 15 H 0.08 3.89 7.74 -2.91 -0.02 3.86 16 16 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 17 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 18 Si 0.98 43.13 29.54 68.60 2.03 45.16 16 19 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 22 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.11 1.02 7.98 -2.39 -0.02 1.00 16 24 H 0.07 1.25 7.93 -2.39 -0.02 1.23 16 25 H 0.08 1.85 7.33 -2.39 -0.02 1.84 16 26 H 0.13 1.41 7.85 -2.39 -0.02 1.39 16 27 H 0.36 11.47 7.07 -74.06 -0.52 10.95 16 28 H 0.12 1.08 7.99 -2.38 -0.02 1.06 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.12 1.36 8.10 -2.39 -0.02 1.34 16 34 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 35 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16 36 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -77.96 324.75 -1.01 -78.97 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.52 Total: 20.10 kcal Atomic # 6 Polarization: -53.34 SS G_CDS: 3.66 Total: -49.68 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -1.07 Total: -81.66 kcal Atomic # 8 Polarization: -98.92 SS G_CDS: -5.89 Total: -104.80 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 92.17 SS G_CDS: -0.26 Total: 91.91 kcal Total: -77.96 -1.01 -78.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332080413.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.596 kcal (2) G-P(sol) polarization free energy of solvation -77.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds