Wall clock time and date at job start Mon Mar 30 2020 01:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.70704 * 2 1 4 4 O 1.43176 * 109.73940 * 239.39707 * 2 1 3 5 5 C 1.36105 * 116.71655 * 194.15939 * 4 2 1 6 6 C 1.38708 * 119.39959 * 197.05273 * 5 4 2 7 7 C 1.38198 * 120.06562 * 180.13938 * 6 5 4 8 8 C 1.38249 * 120.12015 * 0.02734 * 7 6 5 9 9 C 1.38201 * 120.10698 * 359.92255 * 8 7 6 10 10 C 1.38703 * 120.06596 * 0.02562 * 9 8 7 11 11 O 1.36109 * 119.38279 * 180.16818 * 10 9 8 12 12 C 1.43185 * 116.68437 * 197.19071 * 11 10 9 13 13 H 1.08999 * 109.74833 * 194.02658 * 12 11 10 14 14 C 1.50701 * 109.71519 * 73.41141 * 12 11 10 15 15 O 1.21282 * 119.99664 * 350.76563 * 14 12 11 16 16 N 1.34771 * 120.00023 * 170.76362 * 14 12 11 17 17 C 1.46503 * 119.99847 * 175.35899 * 16 14 12 18 18 C 1.50701 * 109.47076 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99978 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00272 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99768 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00181 * 179.72322 * 20 18 17 23 23 H 1.48501 * 109.47178 * 60.00501 * 22 20 18 24 24 H 1.48502 * 109.47119 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47308 * 299.99910 * 22 20 18 26 26 H 1.09001 * 109.46980 * 293.33348 * 1 2 3 27 27 H 1.08999 * 109.46924 * 53.33132 * 1 2 3 28 28 H 1.09000 * 109.47530 * 173.33435 * 1 2 3 29 29 H 1.07999 * 119.96530 * 0.16062 * 6 5 4 30 30 H 1.08001 * 119.93878 * 180.02562 * 7 6 5 31 31 H 1.08000 * 119.94862 * 179.97438 * 8 7 6 32 32 H 1.08005 * 119.96496 * 179.97438 * 9 8 7 33 33 H 0.97000 * 120.00229 * 355.36408 * 16 14 12 34 34 H 1.09001 * 109.46747 * 60.00282 * 17 16 14 35 35 H 1.08996 * 109.47249 * 300.00105 * 17 16 14 36 36 H 0.96995 * 120.00098 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 8 2.0136 -0.6861 -1.1599 5 6 3.3298 -1.0325 -1.1616 6 6 3.9444 -1.3670 -2.3592 7 6 5.2794 -1.7237 -2.3764 8 6 6.0060 -1.7489 -1.2005 9 6 5.4000 -1.4158 -0.0039 10 6 4.0607 -1.0558 0.0202 11 8 3.4788 -0.7271 1.2059 12 6 2.0475 -0.7358 1.2440 13 1 1.6999 -0.2268 2.1429 14 6 1.5474 -2.1574 1.2393 15 8 2.3193 -3.0710 1.0385 16 7 0.2425 -2.4134 1.4583 17 6 -0.2626 -3.7846 1.3534 18 6 -1.7417 -3.7986 1.6421 19 1 -2.2541 -2.8782 1.8804 20 6 -2.4405 -4.9864 1.6032 21 7 -1.8162 -6.1075 1.3145 22 14 -4.2722 -5.0049 1.9687 23 1 -4.9807 -4.1398 0.9915 24 1 -4.7842 -6.3948 1.8623 25 1 -4.5079 -4.4950 3.3433 26 1 -0.3633 0.4070 0.9436 27 1 -0.3633 0.6137 -0.8243 28 1 -0.3634 -1.0207 -0.1193 29 1 3.3791 -1.3482 -3.2793 30 1 5.7560 -1.9833 -3.3102 31 1 7.0490 -2.0285 -1.2171 32 1 5.9696 -1.4366 0.9134 33 1 -0.3624 -1.6898 1.6853 34 1 0.2546 -4.4184 2.0738 35 1 -0.0860 -4.1608 0.3458 36 1 -2.3077 -6.9432 1.2875 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332678373.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:19 Heat of formation + Delta-G solvation = -79.991487 kcal Electronic energy + Delta-G solvation = -21851.437677 eV Core-core repulsion = 18494.517550 eV Total energy + Delta-G solvation = -3356.920127 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.52239 -38.77032 -37.44605 -37.03081 -34.44044 -33.12986 -32.01901 -30.57484 -28.98254 -27.99898 -26.58922 -23.65084 -22.99130 -22.56039 -21.07438 -19.65167 -18.75849 -17.94197 -16.92864 -16.51550 -15.84321 -15.47857 -15.12108 -14.86414 -14.54544 -14.41084 -14.13410 -13.72571 -13.55025 -13.35311 -12.91292 -12.66525 -12.41500 -12.07856 -11.85744 -11.81850 -11.63927 -11.40193 -11.04856 -10.98909 -10.88222 -10.36646 -10.26537 -9.47045 -9.26699 -8.78094 -8.46881 -7.97495 -7.86256 -6.20318 -4.28361 1.43816 1.46570 2.93105 3.02675 3.22439 3.27399 3.28800 3.36817 3.80777 3.90071 4.21480 4.30777 4.71016 4.73013 4.90537 5.05946 5.09001 5.15830 5.30029 5.35314 5.42541 5.51590 5.57046 5.70360 5.95051 6.14828 6.24522 6.32712 6.56249 6.73813 6.99839 7.21668 7.28620 7.45516 7.51437 7.59232 7.91005 8.46339 8.68395 8.92836 9.38024 10.89782 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.027595 B = 0.004614 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.441649 B = 6067.530040 C = 6333.507420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.065 3.935 3 H 0.091 0.909 4 O -0.299 6.299 5 C 0.061 3.939 6 C -0.116 4.116 7 C -0.121 4.121 8 C -0.120 4.120 9 C -0.111 4.111 10 C 0.069 3.931 11 O -0.284 6.284 12 C 0.030 3.970 13 H 0.146 0.854 14 C 0.482 3.518 15 O -0.529 6.529 16 N -0.704 5.704 17 C 0.250 3.750 18 C -0.546 4.546 19 H 0.063 0.937 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.905 3.095 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.391 0.609 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.256 14.383 -3.865 17.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.008 3.992 3 H 0.109 0.891 4 O -0.214 6.214 5 C 0.016 3.984 6 C -0.135 4.135 7 C -0.139 4.139 8 C -0.139 4.139 9 C -0.130 4.130 10 C 0.024 3.976 11 O -0.197 6.197 12 C -0.030 4.030 13 H 0.164 0.836 14 C 0.265 3.735 15 O -0.406 6.406 16 N -0.356 5.356 17 C 0.130 3.870 18 C -0.584 4.584 19 H 0.081 0.919 20 C -0.139 4.139 21 N -0.521 5.521 22 Si 0.732 3.268 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.200 1.200 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.226 0.774 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.715 13.499 -4.006 17.107 hybrid contribution -1.449 0.175 0.485 1.538 sum 8.266 13.674 -3.521 16.361 Atomic orbital electron populations 1.22126 0.90425 1.06091 1.03617 1.23039 0.97448 0.95037 0.83649 0.89138 1.86332 1.21789 1.73037 1.40232 1.18897 0.83952 1.02001 0.93598 1.20393 0.94737 1.02772 0.95613 1.20828 0.93245 1.01316 0.98514 1.20834 1.00045 1.01283 0.91711 1.20376 0.92213 1.01186 0.99231 1.18823 0.93637 1.01316 0.83815 1.86341 1.18807 1.83867 1.30672 1.23386 0.81012 0.96839 1.01796 0.83648 1.20524 0.83942 0.90024 0.79042 1.90717 1.55231 1.45672 1.48942 1.46631 1.07294 1.13395 1.68271 1.19152 0.93761 0.76312 0.97789 1.21140 0.92688 0.94326 1.50225 0.91897 1.24947 0.99073 0.95192 0.94684 1.69965 1.36560 0.98640 1.46940 0.86463 0.84163 0.77311 0.78909 1.20010 1.21037 1.20043 0.89672 0.90472 0.88839 0.85071 0.85376 0.85368 0.85084 0.77425 0.95386 0.95417 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 8.20 37.16 0.30 -1.65 16 2 C 0.07 0.90 3.34 -26.47 -0.09 0.81 16 3 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 4 O -0.30 -5.10 9.71 -32.85 -0.32 -5.42 16 5 C 0.06 1.04 6.23 -39.14 -0.24 0.80 16 6 C -0.12 -1.73 9.96 -39.42 -0.39 -2.12 16 7 C -0.12 -1.53 10.04 -39.59 -0.40 -1.93 16 8 C -0.12 -1.53 10.04 -39.59 -0.40 -1.93 16 9 C -0.11 -1.67 9.96 -39.42 -0.39 -2.06 16 10 C 0.07 1.19 5.37 -39.14 -0.21 0.98 16 11 O -0.28 -4.88 9.95 -46.98 -0.47 -5.35 16 12 C 0.03 0.47 3.37 -27.62 -0.09 0.38 16 13 H 0.15 1.67 8.14 -51.93 -0.42 1.25 16 14 C 0.48 9.97 6.29 -10.99 -0.07 9.90 16 15 O -0.53 -13.44 15.58 -14.02 -0.22 -13.66 16 16 N -0.70 -14.55 4.10 -61.47 -0.25 -14.81 16 17 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 18 C -0.55 -14.49 9.28 -34.44 -0.32 -14.81 16 19 H 0.06 1.53 7.60 -52.48 -0.40 1.13 16 20 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 21 N -0.88 -25.93 13.29 55.43 0.74 -25.20 16 22 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H 0.08 0.74 7.98 -51.93 -0.41 0.33 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.09 1.42 5.99 -51.93 -0.31 1.10 16 29 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 32 H 0.13 1.73 8.06 -52.48 -0.42 1.30 16 33 H 0.39 6.66 6.48 -40.82 -0.26 6.39 16 34 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 305.77 15.07 4.61 4.61 Total: -1.00 -34.28 305.77 -7.69 -41.96 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.33 Total: 5.73 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -2.43 Total: -3.38 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.48 Total: -40.00 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -1.00 Total: -24.43 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.28 -7.69 -41.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332678373.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.027 kcal (2) G-P(sol) polarization free energy of solvation -34.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds