Wall clock time and date at job start Mon Mar 30 2020 01:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46506 * 109.47246 * 2 1 4 4 C 1.36931 * 119.99858 * 66.53765 * 3 2 1 5 5 H 1.07997 * 119.99940 * 211.00842 * 4 3 2 6 6 C 1.38814 * 120.00002 * 31.28578 * 4 3 2 7 7 N 1.31622 * 120.00022 * 21.96801 * 6 4 3 8 8 Si 1.86804 * 119.99998 * 201.96391 * 6 4 3 9 9 H 1.48501 * 109.46983 * 60.00200 * 8 6 4 10 10 H 1.48499 * 109.46738 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47331 * 299.99942 * 8 6 4 12 12 S 1.65598 * 119.99868 * 246.54133 * 3 2 1 13 13 O 1.42099 * 104.27712 * 26.07025 * 12 3 2 14 14 O 1.42098 * 104.27470 * 153.92644 * 12 3 2 15 15 C 1.81400 * 104.45027 * 269.99921 * 12 3 2 16 16 C 1.52996 * 109.47247 * 180.02562 * 15 12 3 17 17 C 1.52997 * 109.47176 * 179.97438 * 16 15 12 18 18 H 1.08997 * 110.45875 * 52.39177 * 17 16 15 19 19 C 1.54509 * 110.51094 * 174.99716 * 17 16 15 20 20 C 1.54484 * 104.06339 * 118.64551 * 19 17 16 21 21 O 1.44420 * 104.80188 * 23.97614 * 20 19 17 22 22 C 1.44427 * 105.27672 * 319.48897 * 21 20 19 23 23 H 1.09003 * 109.46933 * 300.00298 * 1 2 3 24 24 H 1.09004 * 109.46715 * 59.99996 * 1 2 3 25 25 H 1.08997 * 109.47031 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47086 * 240.00180 * 2 1 3 27 27 H 1.09005 * 109.47318 * 119.99546 * 2 1 3 28 28 H 0.96999 * 119.99811 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46802 * 299.99959 * 15 12 3 30 30 H 1.08997 * 109.46952 * 60.00075 * 15 12 3 31 31 H 1.09004 * 109.46565 * 299.99945 * 16 15 12 32 32 H 1.09000 * 109.47151 * 59.99492 * 16 15 12 33 33 H 1.08998 * 110.51030 * 237.28779 * 19 17 16 34 34 H 1.09004 * 110.51157 * 0.02562 * 19 17 16 35 35 H 1.09000 * 110.37198 * 142.80918 * 20 19 17 36 36 H 1.09001 * 110.36897 * 265.03905 * 20 19 17 37 37 H 1.08992 * 110.37481 * 281.67947 * 22 21 20 38 38 H 1.09007 * 110.37321 * 159.34177 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 1.8015 2.1841 1.0878 5 1 1.6811 3.2494 0.9573 6 6 1.7420 1.6295 2.3590 7 7 2.3018 0.4617 2.5943 8 14 0.8678 2.5406 3.7356 9 1 -0.5560 2.7462 3.3670 10 1 0.9458 1.7421 4.9852 11 1 1.5191 3.8580 3.9491 12 16 2.8327 1.9715 -1.3156 13 8 2.3566 1.1895 -2.4023 14 8 2.6065 3.3736 -1.2676 15 6 4.5745 1.5957 -0.9759 16 6 5.4398 2.0986 -2.1331 17 6 6.9090 1.7822 -1.8463 18 1 7.0312 0.7264 -1.6048 19 6 7.7915 2.1669 -3.0548 20 6 8.7506 3.2398 -2.4930 21 8 8.7975 2.9850 -1.0722 22 6 7.4391 2.6683 -0.6973 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 2.2599 0.0740 3.4825 29 1 4.8795 2.0897 -0.0533 30 1 4.6997 0.5182 -0.8698 31 1 5.1349 1.6050 -3.0559 32 1 5.3145 3.1762 -2.2389 33 1 8.3519 1.3017 -3.4093 34 1 7.1812 2.5829 -3.8565 35 1 9.7424 3.1291 -2.9313 36 1 8.3593 4.2382 -2.6884 37 1 6.8458 3.5789 -0.6156 38 1 7.4236 2.1186 0.2439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338871215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:01 Heat of formation + Delta-G solvation = -127.200851 kcal Electronic energy + Delta-G solvation = -20676.743764 eV Core-core repulsion = 17453.220436 eV Total energy + Delta-G solvation = -3223.523328 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.41226 -36.12081 -35.70513 -34.57926 -34.40435 -31.83845 -30.60273 -29.24793 -28.16871 -24.95464 -23.78066 -22.28269 -21.55275 -20.20545 -18.36310 -16.99708 -16.50808 -16.43985 -15.59220 -15.47360 -15.10854 -14.82143 -14.59726 -14.04498 -13.59780 -13.05944 -12.91050 -12.60223 -12.36747 -12.23090 -12.00447 -11.56838 -11.41807 -11.28042 -11.00942 -10.98033 -10.93074 -10.75690 -10.70124 -10.65713 -10.51931 -10.39716 -10.19470 -9.80919 -9.75098 -9.43444 -9.30544 -7.87887 -6.54342 -4.11387 1.61750 3.10521 3.14082 3.19720 3.90366 4.01000 4.27101 4.57733 4.69343 4.77018 4.92561 5.07445 5.19092 5.27702 5.35648 5.46612 5.62214 5.67496 5.69798 5.81652 5.89695 5.97227 6.00192 6.11615 6.20386 6.31254 6.39700 6.43343 6.60258 6.71472 6.81758 6.96458 7.19851 7.33579 7.55733 8.29529 8.68295 9.15725 10.35355 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021325 B = 0.005628 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.681478 B = 4973.868674 C = 5679.334440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.109 3.891 3 N -0.806 5.806 4 C -0.244 4.244 5 H 0.110 0.890 6 C 0.037 3.963 7 N -0.829 5.829 8 Si 0.922 3.078 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.267 1.267 12 S 2.481 3.519 13 O -1.004 7.004 14 O -0.985 6.985 15 C -0.658 4.658 16 C -0.096 4.096 17 C -0.114 4.114 18 H 0.084 0.916 19 C -0.156 4.156 20 C 0.044 3.956 21 O -0.381 6.381 22 C 0.048 3.952 23 H 0.059 0.941 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.104 0.896 28 H 0.275 0.725 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.285 -0.175 -3.787 7.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 N -0.629 5.629 4 C -0.391 4.391 5 H 0.127 0.873 6 C -0.176 4.176 7 N -0.468 5.468 8 Si 0.747 3.253 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.192 1.192 12 S 2.582 3.418 13 O -0.994 6.994 14 O -0.975 6.975 15 C -0.777 4.777 16 C -0.134 4.134 17 C -0.133 4.133 18 H 0.103 0.897 19 C -0.193 4.193 20 C -0.033 4.033 21 O -0.299 6.299 22 C -0.029 4.029 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.121 0.879 28 H 0.085 0.915 29 H 0.134 0.866 30 H 0.127 0.873 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.304 0.097 -4.521 7.758 hybrid contribution 0.139 -0.029 0.956 0.967 sum 6.443 0.068 -3.565 7.363 Atomic orbital electron populations 1.21879 0.97146 0.99680 1.01725 1.21421 0.93920 0.83475 1.02882 1.53668 1.55199 1.20078 1.33991 1.19766 1.41392 0.93485 0.84484 0.87250 1.25730 0.96565 0.96624 0.98718 1.69889 1.36832 1.17159 1.22881 0.86049 0.80441 0.79650 0.79137 1.19341 1.20659 1.19220 1.13084 0.76663 0.75000 0.77025 1.93343 1.78909 1.71237 1.55931 1.93354 1.84282 1.32613 1.87260 1.31085 1.31580 1.09289 1.05783 1.21287 0.93615 1.01134 0.97402 1.22540 0.94980 1.01098 0.94732 0.89729 1.23069 0.98107 0.99569 0.98602 1.23393 1.00041 0.97868 0.82019 1.89091 1.27685 1.90409 1.22757 1.23582 0.82503 0.98414 0.98398 0.92222 0.93778 0.93660 0.92541 0.87852 0.91466 0.86638 0.87288 0.91195 0.91283 0.90725 0.90276 0.89434 0.92333 0.91698 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.96 37.16 0.37 -2.54 16 2 C 0.11 2.39 5.78 -4.04 -0.02 2.37 16 3 N -0.81 -18.93 2.91 -59.90 -0.17 -19.10 16 4 C -0.24 -5.94 8.62 -15.06 -0.13 -6.07 16 5 H 0.11 2.72 7.26 -52.49 -0.38 2.34 16 6 C 0.04 0.85 4.71 -17.43 -0.08 0.77 16 7 N -0.83 -19.42 11.06 55.49 0.61 -18.80 16 8 Si 0.92 18.32 29.61 -169.99 -5.03 13.29 16 9 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 10 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 11 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 12 S 2.48 56.27 5.36 -107.50 -0.58 55.69 16 13 O -1.00 -24.48 16.65 -57.54 -0.96 -25.43 16 14 O -0.99 -24.98 16.83 -57.54 -0.97 -25.95 16 15 C -0.66 -12.31 6.06 37.16 0.23 -12.09 16 16 C -0.10 -1.56 4.44 -26.73 -0.12 -1.68 16 17 C -0.11 -1.62 3.11 -89.05 -0.28 -1.89 16 18 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 19 C -0.16 -1.83 6.74 -25.16 -0.17 -2.00 16 20 C 0.04 0.51 7.63 37.94 0.29 0.80 16 21 O -0.38 -5.67 11.65 -35.23 -0.41 -6.08 16 22 C 0.05 0.70 6.51 37.93 0.25 0.95 16 23 H 0.06 1.23 7.47 -51.93 -0.39 0.85 16 24 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 1.17 7.02 -51.93 -0.36 0.81 16 27 H 0.10 2.34 5.52 -51.93 -0.29 2.05 16 28 H 0.27 6.06 8.31 -40.82 -0.34 5.72 16 29 H 0.12 2.17 7.63 -51.92 -0.40 1.78 16 30 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.11 7.96 -51.93 -0.41 0.70 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.86 7.73 -51.93 -0.40 0.46 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.96 7.74 -51.93 -0.40 0.56 16 38 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 318.87 15.07 4.81 4.81 Total: -1.00 -28.64 318.87 -8.34 -36.98 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.97 Total: 6.01 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 0.33 Total: -21.39 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.44 Total: -37.91 kcal Atomic # 8 Polarization: -55.14 SS G_CDS: -2.34 Total: -57.47 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Atomic # 16 Polarization: 56.27 SS G_CDS: -0.58 Total: 55.69 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.64 -8.34 -36.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338871215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.222 kcal (2) G-P(sol) polarization free energy of solvation -28.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds