Wall clock time and date at job start Mon Mar 30 2020 01:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46506 * 109.47246 * 2 1 4 4 C 1.36931 * 119.99858 * 66.53765 * 3 2 1 5 5 H 1.07997 * 119.99940 * 211.00842 * 4 3 2 6 6 C 1.38814 * 120.00002 * 31.28578 * 4 3 2 7 7 N 1.31622 * 120.00022 * 21.96801 * 6 4 3 8 8 Si 1.86804 * 119.99998 * 201.96391 * 6 4 3 9 9 H 1.48501 * 109.46983 * 60.00200 * 8 6 4 10 10 H 1.48499 * 109.46738 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47331 * 299.99942 * 8 6 4 12 12 S 1.65598 * 119.99868 * 246.54133 * 3 2 1 13 13 O 1.42099 * 104.27712 * 26.07025 * 12 3 2 14 14 O 1.42098 * 104.27470 * 153.92644 * 12 3 2 15 15 C 1.81400 * 104.45027 * 269.99921 * 12 3 2 16 16 C 1.52996 * 109.47247 * 180.02562 * 15 12 3 17 17 C 1.52997 * 109.47176 * 179.97438 * 16 15 12 18 18 H 1.08997 * 110.45875 * 52.39177 * 17 16 15 19 19 C 1.54509 * 110.51094 * 174.99716 * 17 16 15 20 20 C 1.54484 * 104.06339 * 118.64551 * 19 17 16 21 21 O 1.44420 * 104.80188 * 23.97614 * 20 19 17 22 22 C 1.44427 * 105.27672 * 319.48897 * 21 20 19 23 23 H 1.09003 * 109.46933 * 300.00298 * 1 2 3 24 24 H 1.09004 * 109.46715 * 59.99996 * 1 2 3 25 25 H 1.08997 * 109.47031 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47086 * 240.00180 * 2 1 3 27 27 H 1.09005 * 109.47318 * 119.99546 * 2 1 3 28 28 H 0.96999 * 119.99811 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46802 * 299.99959 * 15 12 3 30 30 H 1.08997 * 109.46952 * 60.00075 * 15 12 3 31 31 H 1.09004 * 109.46565 * 299.99945 * 16 15 12 32 32 H 1.09000 * 109.47151 * 59.99492 * 16 15 12 33 33 H 1.08998 * 110.51030 * 237.28779 * 19 17 16 34 34 H 1.09004 * 110.51157 * 0.02562 * 19 17 16 35 35 H 1.09000 * 110.37198 * 142.80918 * 20 19 17 36 36 H 1.09001 * 110.36897 * 265.03905 * 20 19 17 37 37 H 1.08992 * 110.37481 * 281.67947 * 22 21 20 38 38 H 1.09007 * 110.37321 * 159.34177 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 1.8015 2.1841 1.0878 5 1 1.6811 3.2494 0.9573 6 6 1.7420 1.6295 2.3590 7 7 2.3018 0.4617 2.5943 8 14 0.8678 2.5406 3.7356 9 1 -0.5560 2.7462 3.3670 10 1 0.9458 1.7421 4.9852 11 1 1.5191 3.8580 3.9491 12 16 2.8327 1.9715 -1.3156 13 8 2.3566 1.1895 -2.4023 14 8 2.6065 3.3736 -1.2676 15 6 4.5745 1.5957 -0.9759 16 6 5.4398 2.0986 -2.1331 17 6 6.9090 1.7822 -1.8463 18 1 7.0312 0.7264 -1.6048 19 6 7.7915 2.1669 -3.0548 20 6 8.7506 3.2398 -2.4930 21 8 8.7975 2.9850 -1.0722 22 6 7.4391 2.6683 -0.6973 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 2.2599 0.0740 3.4825 29 1 4.8795 2.0897 -0.0533 30 1 4.6997 0.5182 -0.8698 31 1 5.1349 1.6050 -3.0559 32 1 5.3145 3.1762 -2.2389 33 1 8.3519 1.3017 -3.4093 34 1 7.1812 2.5829 -3.8565 35 1 9.7424 3.1291 -2.9313 36 1 8.3593 4.2382 -2.6884 37 1 6.8458 3.5789 -0.6156 38 1 7.4236 2.1186 0.2439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338871215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:00 Heat of formation + Delta-G solvation = -146.187405 kcal Electronic energy + Delta-G solvation = -20677.567083 eV Core-core repulsion = 17453.220436 eV Total energy + Delta-G solvation = -3224.346646 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.47949 -37.86745 -37.65859 -36.49530 -35.72309 -33.58174 -31.72623 -30.95011 -29.35550 -26.71874 -25.08286 -23.40514 -23.22017 -21.34358 -20.16194 -18.81581 -18.28633 -17.59648 -16.89349 -16.82590 -16.69987 -16.36508 -16.18304 -15.42830 -15.15326 -14.61485 -14.31251 -14.03695 -13.75062 -13.68442 -13.58734 -13.06468 -12.89569 -12.75532 -12.67279 -12.59644 -12.57781 -12.48182 -12.16950 -12.15634 -11.94470 -11.77604 -11.55698 -11.52779 -11.14488 -10.98804 -10.80986 -9.63623 -8.27274 -5.94693 -0.18232 1.50535 1.53855 1.61078 2.20406 2.53623 2.92093 2.99110 3.31691 3.52317 3.58804 3.74678 3.90078 4.03197 4.13072 4.24702 4.34825 4.41193 4.46911 4.64317 4.71679 4.73483 4.75783 4.81266 4.82716 4.93834 4.98482 5.03037 5.11341 5.20576 5.29665 5.43669 5.64415 5.79164 5.84003 6.50253 6.91450 7.37711 8.63772 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021325 B = 0.005628 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.681478 B = 4973.868674 C = 5679.334440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.105 3.895 3 N -0.825 5.825 4 C -0.282 4.282 5 H 0.092 0.908 6 C 0.014 3.986 7 N -0.851 5.851 8 Si 0.972 3.028 9 H -0.270 1.270 10 H -0.273 1.273 11 H -0.268 1.268 12 S 2.502 3.498 13 O -1.020 7.020 14 O -1.014 7.014 15 C -0.636 4.636 16 C -0.101 4.101 17 C -0.112 4.112 18 H 0.089 0.911 19 C -0.152 4.152 20 C 0.037 3.963 21 O -0.399 6.399 22 C 0.043 3.957 23 H 0.047 0.953 24 H 0.036 0.964 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.278 0.722 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.431 -0.637 -4.409 8.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 N -0.650 5.650 4 C -0.426 4.426 5 H 0.110 0.890 6 C -0.197 4.197 7 N -0.489 5.489 8 Si 0.795 3.205 9 H -0.195 1.195 10 H -0.198 1.198 11 H -0.193 1.193 12 S 2.607 3.393 13 O -1.010 7.010 14 O -1.005 7.005 15 C -0.762 4.762 16 C -0.139 4.139 17 C -0.132 4.132 18 H 0.107 0.893 19 C -0.189 4.189 20 C -0.039 4.039 21 O -0.318 6.318 22 C -0.033 4.033 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.089 0.911 29 H 0.135 0.865 30 H 0.142 0.858 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.129 0.871 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.377 -0.360 -5.100 8.976 hybrid contribution -0.080 0.111 0.970 0.979 sum 7.297 -0.249 -4.131 8.388 Atomic orbital electron populations 1.21849 0.96159 1.01324 1.00738 1.21506 0.94947 0.82899 1.02788 1.53433 1.57530 1.20524 1.33471 1.19609 1.44724 0.92920 0.85324 0.89047 1.26190 0.96540 0.97221 0.99747 1.69923 1.37554 1.17984 1.23408 0.85308 0.79273 0.78689 0.77215 1.19507 1.19766 1.19328 1.11308 0.77988 0.73931 0.76069 1.93333 1.80075 1.71357 1.56283 1.93331 1.85482 1.34133 1.87541 1.30765 1.27798 1.10478 1.07151 1.21399 0.94767 1.01292 0.96471 1.22496 0.93590 1.01255 0.95835 0.89252 1.23088 0.97853 1.00292 0.97709 1.23637 1.01556 0.98233 0.80519 1.89074 1.27503 1.90541 1.24684 1.23583 0.82742 0.98277 0.98732 0.93399 0.94474 0.90703 0.91871 0.88484 0.91138 0.86466 0.85818 0.90128 0.91191 0.89028 0.89200 0.87111 0.91758 0.92371 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.63 9.96 71.98 0.72 -4.91 16 2 C 0.10 4.55 5.78 86.38 0.50 5.05 16 3 N -0.82 -39.03 2.91 -343.43 -1.00 -40.03 16 4 C -0.28 -13.98 8.62 84.03 0.72 -13.25 16 5 H 0.09 4.73 7.26 -2.91 -0.02 4.71 16 6 C 0.01 0.63 4.71 84.86 0.40 1.03 16 7 N -0.85 -39.85 11.06 21.65 0.24 -39.61 16 8 Si 0.97 37.64 29.61 68.60 2.03 39.67 16 9 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 10 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 11 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 12 S 2.50 112.70 5.36 -56.49 -0.30 112.40 16 13 O -1.02 -48.89 16.65 -127.65 -2.13 -51.01 16 14 O -1.01 -51.84 16.83 -127.65 -2.15 -53.99 16 15 C -0.64 -22.91 6.06 71.98 0.44 -22.47 16 16 C -0.10 -3.06 4.44 30.59 0.14 -2.92 16 17 C -0.11 -2.90 3.11 -9.78 -0.03 -2.93 16 18 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 19 C -0.15 -3.08 6.74 31.61 0.21 -2.86 16 20 C 0.04 0.76 7.63 72.49 0.55 1.32 16 21 O -0.40 -11.13 11.65 -148.98 -1.74 -12.86 16 22 C 0.04 1.21 6.51 72.48 0.47 1.68 16 23 H 0.05 1.99 7.47 -2.39 -0.02 1.97 16 24 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.07 2.46 8.14 -2.39 -0.02 2.45 16 26 H 0.06 2.59 7.02 -2.39 -0.02 2.57 16 27 H 0.10 4.38 5.52 -2.38 -0.01 4.37 16 28 H 0.28 12.21 8.31 -92.71 -0.77 11.44 16 29 H 0.12 4.30 7.63 -2.39 -0.02 4.28 16 30 H 0.12 4.17 8.14 -2.39 -0.02 4.15 16 31 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.07 2.12 7.96 -2.39 -0.02 2.11 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.64 7.73 -2.38 -0.02 1.62 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.67 7.74 -2.39 -0.02 1.65 16 38 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 Total: -1.00 -60.26 318.87 0.11 -60.15 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 1.03 Total: 25.56 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 4.12 Total: -40.28 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -0.76 Total: -79.64 kcal Atomic # 8 Polarization: -111.86 SS G_CDS: -6.01 Total: -117.87 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Atomic # 16 Polarization: 112.70 SS G_CDS: -0.30 Total: 112.40 kcal Total: -60.26 0.11 -60.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338871215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.036 kcal (2) G-P(sol) polarization free energy of solvation -60.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds