Wall clock time and date at job start Mon Mar 30 2020 01:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46552 * 2 1 4 4 C 1.50695 * 109.47050 * 120.00095 * 2 1 3 5 5 H 1.07998 * 120.00270 * 120.00158 * 4 2 1 6 6 C 1.37883 * 120.00032 * 300.00195 * 4 2 1 7 7 N 1.31513 * 119.99837 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99799 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47516 * 89.99590 * 8 6 4 10 10 H 1.48496 * 109.46859 * 210.00023 * 8 6 4 11 11 H 1.48497 * 109.47230 * 329.99724 * 8 6 4 12 12 N 1.46502 * 109.47067 * 240.00538 * 2 1 3 13 13 S 1.65595 * 120.00123 * 94.99717 * 12 2 1 14 14 O 1.42093 * 104.27935 * 308.92604 * 13 12 2 15 15 O 1.42105 * 104.27413 * 181.06655 * 13 12 2 16 16 C 1.81401 * 104.44822 * 65.00073 * 13 12 2 17 17 C 1.52997 * 109.47149 * 179.97438 * 16 13 12 18 18 C 1.52992 * 109.47482 * 179.97438 * 17 16 13 19 19 H 1.09000 * 110.80652 * 305.70626 * 18 17 16 20 20 C 1.54813 * 110.91184 * 182.07187 * 18 17 16 21 21 C 1.54097 * 104.18960 * 220.92281 * 20 18 17 22 22 O 1.43743 * 107.29388 * 357.97007 * 21 20 18 23 23 C 1.44416 * 107.00067 * 26.48710 * 22 21 20 24 24 H 1.09006 * 109.47804 * 299.99681 * 1 2 3 25 25 H 1.09004 * 109.47389 * 59.99957 * 1 2 3 26 26 H 1.09008 * 109.47178 * 179.97438 * 1 2 3 27 27 H 0.97004 * 119.99430 * 179.97438 * 7 6 4 28 28 H 0.96997 * 119.99542 * 274.99703 * 12 2 1 29 29 H 1.09002 * 109.47085 * 299.99812 * 16 13 12 30 30 H 1.09001 * 109.47417 * 59.99938 * 16 13 12 31 31 H 1.09002 * 109.47153 * 299.99990 * 17 16 13 32 32 H 1.08998 * 109.47533 * 59.99620 * 17 16 13 33 33 H 1.08998 * 110.48500 * 339.59892 * 20 18 17 34 34 H 1.09001 * 110.48481 * 102.24513 * 20 18 17 35 35 H 1.08999 * 109.87913 * 117.39243 * 21 20 18 36 36 H 1.09003 * 109.87923 * 238.54414 * 21 20 18 37 37 H 1.08995 * 110.65274 * 201.47990 * 23 22 21 38 38 H 1.09001 * 110.59858 * 78.47457 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.6304 -0.5442 4.4119 10 1 1.3443 -0.9491 5.1122 11 1 2.4879 -2.5654 3.7121 12 7 2.0183 -0.6905 -1.1963 13 16 2.4121 0.1773 -2.5505 14 8 1.2750 0.9967 -2.7846 15 8 2.8122 -0.8074 -3.4936 16 6 3.8312 1.1874 -2.0440 17 6 4.2940 2.0446 -3.2238 18 6 5.4905 2.8970 -2.7965 19 1 5.2526 3.4798 -1.9067 20 6 5.9542 3.8171 -3.9520 21 6 7.4927 3.7594 -3.8866 22 8 7.8420 2.9275 -2.7676 23 6 6.7426 2.0142 -2.5610 24 1 -0.3635 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.7088 1.1613 3.4845 28 1 2.1109 -1.6560 -1.1950 29 1 3.5398 1.8344 -1.2166 30 1 4.6458 0.5364 -1.7268 31 1 4.5855 1.3973 -4.0509 32 1 3.4796 2.6956 -3.5415 33 1 5.5984 3.4361 -4.9092 34 1 5.6035 4.8366 -3.7919 35 1 7.8868 3.3276 -4.8066 36 1 7.8955 4.7621 -3.7431 37 1 6.7520 1.6253 -1.5428 38 1 6.7796 1.1997 -3.2844 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338880049.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:57 Heat of formation + Delta-G solvation = -137.359182 kcal Electronic energy + Delta-G solvation = -20241.453749 eV Core-core repulsion = 17017.489923 eV Total energy + Delta-G solvation = -3223.963826 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.61698 -36.60661 -35.54008 -35.34197 -34.89072 -32.23336 -31.01331 -28.58543 -28.28191 -25.25061 -24.32582 -22.38782 -20.98457 -20.63168 -18.70558 -17.49416 -16.81164 -16.45163 -15.82947 -15.73096 -15.55777 -15.26446 -14.82249 -14.30454 -13.69194 -13.39926 -13.15179 -12.69055 -12.64119 -12.25775 -12.00105 -11.74647 -11.67774 -11.63547 -11.50162 -11.42371 -11.16944 -11.01991 -10.94760 -10.72041 -10.58327 -10.31765 -10.24039 -10.10372 -9.83872 -9.19850 -8.65554 -8.30317 -6.18716 -4.27723 0.81418 3.20694 3.28432 3.30215 3.42381 3.76649 4.15476 4.29577 4.33431 4.53282 4.65593 4.71164 4.82808 4.92142 5.12049 5.12887 5.14641 5.32408 5.51053 5.51800 5.55009 5.64333 5.74654 5.79406 5.94344 6.07829 6.28371 6.68993 6.80430 7.05423 7.08486 7.54385 7.67883 7.79091 8.00072 8.23913 8.76572 9.39585 10.86634 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017562 B = 0.005139 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.972798 B = 5447.711278 C = 6432.999834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.273 3.727 3 H 0.038 0.962 4 C -0.529 4.529 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -1.103 6.103 13 S 2.609 3.391 14 O -0.961 6.961 15 O -0.983 6.983 16 C -0.636 4.636 17 C -0.100 4.100 18 C -0.114 4.114 19 H 0.093 0.907 20 C -0.156 4.156 21 C 0.046 3.954 22 O -0.380 6.380 23 C 0.047 3.953 24 H 0.090 0.910 25 H 0.027 0.973 26 H 0.031 0.969 27 H 0.265 0.735 28 H 0.408 0.592 29 H 0.138 0.862 30 H 0.131 0.869 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.777 4.503 -10.077 14.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.169 3.831 3 H 0.056 0.944 4 C -0.569 4.569 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.864 5.864 13 S 2.701 3.299 14 O -0.951 6.951 15 O -0.973 6.973 16 C -0.764 4.764 17 C -0.139 4.139 18 C -0.134 4.134 19 H 0.112 0.888 20 C -0.194 4.194 21 C -0.031 4.031 22 O -0.299 6.299 23 C -0.030 4.030 24 H 0.109 0.891 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.242 0.758 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.421 4.803 -10.641 14.394 hybrid contribution 0.609 -0.612 1.406 1.650 sum 9.030 4.191 -9.235 13.579 Atomic orbital electron populations 1.22223 0.98093 0.99942 1.01458 1.18514 0.91671 0.91835 0.81073 0.94413 1.21317 1.32140 1.13346 0.90049 0.91739 1.24933 0.94776 0.95005 0.99131 1.69882 1.35901 1.22601 1.24001 0.86469 0.78553 0.80015 0.82207 1.20598 1.21085 1.19806 1.55586 1.81002 1.18494 1.31268 1.04789 0.76291 0.75053 0.73811 1.93578 1.45711 1.71336 1.84501 1.93529 1.84867 1.57806 1.61082 1.30706 1.21858 1.14972 1.08910 1.21262 0.98724 0.98094 0.95779 1.22706 0.94960 0.96533 0.99160 0.88831 1.23051 0.95754 1.01111 0.99476 1.23147 0.94484 0.95524 0.89907 1.88875 1.41291 1.49357 1.50398 1.23740 0.84393 0.92316 1.02529 0.89149 0.95436 0.94978 0.92516 0.75821 0.84326 0.85066 0.90383 0.89917 0.90276 0.90156 0.92461 0.89986 0.88428 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 9.29 37.16 0.35 -3.42 16 2 C 0.27 6.34 2.66 -69.09 -0.18 6.16 16 3 H 0.04 0.90 7.15 -51.93 -0.37 0.53 16 4 C -0.53 -13.25 8.76 -34.44 -0.30 -13.55 16 5 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.64 11.32 55.43 0.63 -23.02 16 8 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 N -1.10 -21.39 5.35 -5.88 -0.03 -21.43 16 13 S 2.61 45.15 5.38 -107.50 -0.58 44.57 16 14 O -0.96 -19.66 17.11 -57.54 -0.98 -20.64 16 15 O -0.98 -18.48 18.08 -57.54 -1.04 -19.52 16 16 C -0.64 -8.68 5.83 37.16 0.22 -8.46 16 17 C -0.10 -1.16 4.62 -26.74 -0.12 -1.28 16 18 C -0.11 -1.23 3.12 -88.61 -0.28 -1.50 16 19 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 20 C -0.16 -1.40 6.60 -25.20 -0.17 -1.56 16 21 C 0.05 0.44 7.70 37.73 0.29 0.73 16 22 O -0.38 -4.77 11.52 -35.23 -0.41 -5.17 16 23 C 0.05 0.53 6.49 38.21 0.25 0.77 16 24 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 25 H 0.03 0.63 7.42 -51.93 -0.39 0.24 16 26 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 27 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 28 H 0.41 7.38 8.79 -34.47 -0.30 7.08 16 29 H 0.14 1.93 7.44 -51.92 -0.39 1.54 16 30 H 0.13 1.59 7.58 -51.92 -0.39 1.20 16 31 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.62 7.86 -51.93 -0.41 0.22 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.10 1.08 8.11 -51.93 -0.42 0.66 16 38 H 0.06 0.67 7.98 -51.93 -0.41 0.25 16 LS Contribution 321.42 15.07 4.84 4.84 Total: -1.00 -31.15 321.42 -8.53 -39.68 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.90 Total: 6.28 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -0.05 Total: -20.56 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.60 Total: -44.44 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -2.43 Total: -45.33 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 45.15 SS G_CDS: -0.58 Total: 44.57 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.15 -8.53 -39.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338880049.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.679 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds