Wall clock time and date at job start Mon Mar 30 2020 01:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46552 * 2 1 4 4 C 1.50695 * 109.47050 * 120.00095 * 2 1 3 5 5 H 1.07998 * 120.00270 * 120.00158 * 4 2 1 6 6 C 1.37883 * 120.00032 * 300.00195 * 4 2 1 7 7 N 1.31513 * 119.99837 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99799 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47516 * 89.99590 * 8 6 4 10 10 H 1.48496 * 109.46859 * 210.00023 * 8 6 4 11 11 H 1.48497 * 109.47230 * 329.99724 * 8 6 4 12 12 N 1.46502 * 109.47067 * 240.00538 * 2 1 3 13 13 S 1.65595 * 120.00123 * 94.99717 * 12 2 1 14 14 O 1.42093 * 104.27935 * 308.92604 * 13 12 2 15 15 O 1.42105 * 104.27413 * 181.06655 * 13 12 2 16 16 C 1.81401 * 104.44822 * 65.00073 * 13 12 2 17 17 C 1.52997 * 109.47149 * 179.97438 * 16 13 12 18 18 C 1.52992 * 109.47482 * 179.97438 * 17 16 13 19 19 H 1.09000 * 110.80652 * 305.70626 * 18 17 16 20 20 C 1.54813 * 110.91184 * 182.07187 * 18 17 16 21 21 C 1.54097 * 104.18960 * 220.92281 * 20 18 17 22 22 O 1.43743 * 107.29388 * 357.97007 * 21 20 18 23 23 C 1.44416 * 107.00067 * 26.48710 * 22 21 20 24 24 H 1.09006 * 109.47804 * 299.99681 * 1 2 3 25 25 H 1.09004 * 109.47389 * 59.99957 * 1 2 3 26 26 H 1.09008 * 109.47178 * 179.97438 * 1 2 3 27 27 H 0.97004 * 119.99430 * 179.97438 * 7 6 4 28 28 H 0.96997 * 119.99542 * 274.99703 * 12 2 1 29 29 H 1.09002 * 109.47085 * 299.99812 * 16 13 12 30 30 H 1.09001 * 109.47417 * 59.99938 * 16 13 12 31 31 H 1.09002 * 109.47153 * 299.99990 * 17 16 13 32 32 H 1.08998 * 109.47533 * 59.99620 * 17 16 13 33 33 H 1.08998 * 110.48500 * 339.59892 * 20 18 17 34 34 H 1.09001 * 110.48481 * 102.24513 * 20 18 17 35 35 H 1.08999 * 109.87913 * 117.39243 * 21 20 18 36 36 H 1.09003 * 109.87923 * 238.54414 * 21 20 18 37 37 H 1.08995 * 110.65274 * 201.47990 * 23 22 21 38 38 H 1.09001 * 110.59858 * 78.47457 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.6304 -0.5442 4.4119 10 1 1.3443 -0.9491 5.1122 11 1 2.4879 -2.5654 3.7121 12 7 2.0183 -0.6905 -1.1963 13 16 2.4121 0.1773 -2.5505 14 8 1.2750 0.9967 -2.7846 15 8 2.8122 -0.8074 -3.4936 16 6 3.8312 1.1874 -2.0440 17 6 4.2940 2.0446 -3.2238 18 6 5.4905 2.8970 -2.7965 19 1 5.2526 3.4798 -1.9067 20 6 5.9542 3.8171 -3.9520 21 6 7.4927 3.7594 -3.8866 22 8 7.8420 2.9275 -2.7676 23 6 6.7426 2.0142 -2.5610 24 1 -0.3635 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.7088 1.1613 3.4845 28 1 2.1109 -1.6560 -1.1950 29 1 3.5398 1.8344 -1.2166 30 1 4.6458 0.5364 -1.7268 31 1 4.5855 1.3973 -4.0509 32 1 3.4796 2.6956 -3.5415 33 1 5.5984 3.4361 -4.9092 34 1 5.6035 4.8366 -3.7919 35 1 7.8868 3.3276 -4.8066 36 1 7.8955 4.7621 -3.7431 37 1 6.7520 1.6253 -1.5428 38 1 6.7796 1.1997 -3.2844 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338880049.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:56 Heat of formation + Delta-G solvation = -160.298848 kcal Electronic energy + Delta-G solvation = -20242.448488 eV Core-core repulsion = 17017.489923 eV Total energy + Delta-G solvation = -3224.958565 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.43117 -38.11682 -37.22887 -36.90148 -35.84348 -34.08719 -31.86126 -30.08315 -29.45635 -27.21431 -25.29524 -23.17493 -22.81289 -21.47544 -20.17347 -19.11374 -17.96932 -17.71504 -17.24091 -17.01085 -16.70797 -16.48803 -16.16787 -15.47985 -15.12382 -14.51068 -14.33328 -14.06868 -14.01219 -13.59570 -13.45947 -13.21548 -13.09041 -12.96665 -12.93187 -12.81036 -12.49952 -12.34430 -12.30034 -12.18892 -11.97425 -11.77683 -11.52159 -11.45850 -11.01602 -10.64014 -10.56157 -10.01103 -8.12741 -6.27268 -0.56828 1.46432 1.49251 1.57735 1.95741 2.45486 2.84778 3.00907 3.17176 3.35005 3.40624 3.69791 3.88705 3.93434 4.03023 4.22629 4.34480 4.43691 4.52097 4.58418 4.73149 4.82320 4.85377 4.88022 4.93724 4.95852 5.11234 5.13513 5.18712 5.25455 5.61151 5.75546 5.91245 6.03898 6.11694 6.44939 6.85175 7.43268 8.92286 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017562 B = 0.005139 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.972798 B = 5447.711278 C = 6432.999834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.276 3.724 3 H 0.031 0.969 4 C -0.539 4.539 5 H 0.069 0.931 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.960 3.040 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.268 1.268 12 N -1.108 6.108 13 S 2.616 3.384 14 O -0.997 6.997 15 O -0.996 6.996 16 C -0.614 4.614 17 C -0.105 4.105 18 C -0.113 4.113 19 H 0.088 0.912 20 C -0.153 4.153 21 C 0.040 3.960 22 O -0.405 6.405 23 C 0.040 3.960 24 H 0.070 0.930 25 H 0.027 0.973 26 H 0.032 0.968 27 H 0.265 0.735 28 H 0.413 0.587 29 H 0.139 0.861 30 H 0.151 0.849 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.203 4.543 -10.488 15.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.170 3.830 3 H 0.049 0.951 4 C -0.578 4.578 5 H 0.088 0.912 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.786 3.214 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.193 1.193 12 N -0.866 5.866 13 S 2.712 3.288 14 O -0.987 6.987 15 O -0.987 6.987 16 C -0.746 4.746 17 C -0.144 4.144 18 C -0.133 4.133 19 H 0.107 0.893 20 C -0.191 4.191 21 C -0.037 4.037 22 O -0.325 6.325 23 C -0.036 4.036 24 H 0.088 0.912 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.247 0.753 29 H 0.157 0.843 30 H 0.169 0.831 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.815 4.802 -11.075 15.558 hybrid contribution 0.214 -0.588 1.466 1.594 sum 10.029 4.215 -9.609 14.514 Atomic orbital electron populations 1.22152 0.99036 0.99631 1.00459 1.18267 0.90998 0.91710 0.82013 0.95125 1.21630 1.31921 1.13468 0.90808 0.91242 1.25661 0.95013 0.95639 1.01813 1.69996 1.36969 1.23839 1.24504 0.85528 0.77948 0.79108 0.78846 1.20077 1.21346 1.19300 1.55436 1.81793 1.18993 1.30419 1.04475 0.76669 0.74666 0.72956 1.93530 1.48603 1.71709 1.84886 1.93508 1.85123 1.58767 1.61300 1.30485 1.19689 1.14624 1.09832 1.21414 0.99456 0.98349 0.95185 1.22663 0.94199 0.96612 0.99826 0.89349 1.23073 0.95337 1.01370 0.99277 1.23346 0.94937 0.95833 0.89552 1.88847 1.42003 1.50013 1.51623 1.23835 0.84400 0.92588 1.02760 0.91161 0.95346 0.94893 0.92577 0.75303 0.84308 0.83082 0.88921 0.89232 0.88962 0.89073 0.91310 0.88889 0.88685 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.40 9.29 71.98 0.67 -6.73 16 2 C 0.28 12.76 2.66 44.24 0.12 12.88 16 3 H 0.03 1.47 7.15 -2.39 -0.02 1.45 16 4 C -0.54 -26.66 8.76 25.60 0.22 -26.43 16 5 H 0.07 3.29 7.81 -2.91 -0.02 3.27 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.91 -48.94 11.32 21.45 0.24 -48.70 16 8 Si 0.96 40.43 29.54 68.60 2.03 42.46 16 9 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 10 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 12 N -1.11 -42.37 5.35 -172.53 -0.92 -43.29 16 13 S 2.62 88.28 5.38 -56.49 -0.30 87.97 16 14 O -1.00 -40.59 17.11 -127.65 -2.18 -42.77 16 15 O -1.00 -36.29 18.08 -127.65 -2.31 -38.59 16 16 C -0.61 -15.62 5.83 71.98 0.42 -15.20 16 17 C -0.11 -2.19 4.62 30.59 0.14 -2.05 16 18 C -0.11 -2.18 3.12 -9.49 -0.03 -2.21 16 19 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 20 C -0.15 -2.32 6.60 31.58 0.21 -2.11 16 21 C 0.04 0.66 7.70 72.35 0.56 1.21 16 22 O -0.41 -9.46 11.52 -148.98 -1.72 -11.18 16 23 C 0.04 0.83 6.49 72.67 0.47 1.31 16 24 H 0.07 3.68 6.07 -2.38 -0.01 3.66 16 25 H 0.03 1.31 7.42 -2.38 -0.02 1.29 16 26 H 0.03 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 28 H 0.41 14.69 8.79 -96.75 -0.85 13.84 16 29 H 0.14 3.66 7.44 -2.39 -0.02 3.64 16 30 H 0.15 3.29 7.58 -2.39 -0.02 3.27 16 31 H 0.09 1.69 8.05 -2.39 -0.02 1.67 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.09 1.16 7.86 -2.39 -0.02 1.14 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.09 1.95 8.11 -2.39 -0.02 1.93 16 38 H 0.07 1.35 7.98 -2.39 -0.02 1.33 16 Total: -1.00 -64.91 321.42 -1.74 -66.65 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.20 Total: 25.37 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 3.23 Total: -37.92 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -0.68 Total: -91.99 kcal Atomic # 8 Polarization: -86.34 SS G_CDS: -6.21 Total: -92.55 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Atomic # 16 Polarization: 88.28 SS G_CDS: -0.30 Total: 87.97 kcal Total: -64.91 -1.74 -66.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338880049.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.649 kcal (2) G-P(sol) polarization free energy of solvation -64.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds