Wall clock time and date at job start Mon Mar 30 2020 02:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99730 * 2 1 4 4 O 1.42902 * 109.47398 * 134.99602 * 3 2 1 5 5 C 1.35798 * 117.00377 * 179.97438 * 4 3 2 6 6 C 1.38854 * 119.92171 * 0.02562 * 5 4 3 7 7 C 1.37771 * 120.15416 * 179.97438 * 6 5 4 8 8 C 1.39772 * 119.99928 * 0.02562 * 7 6 5 9 9 C 1.47493 * 120.07938 * 180.02562 * 8 7 6 10 10 O 1.21618 * 120.00591 * 179.97438 * 9 8 7 11 11 N 1.34785 * 120.00035 * 0.02562 * 9 8 7 12 12 C 1.36895 * 120.00300 * 180.02562 * 11 9 8 13 13 H 1.07997 * 119.99775 * 359.97438 * 12 11 9 14 14 C 1.39022 * 119.99936 * 179.97438 * 12 11 9 15 15 N 1.31379 * 120.00198 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99874 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46778 * 90.00130 * 16 14 12 18 18 H 1.48494 * 109.47324 * 209.99964 * 16 14 12 19 19 H 1.48503 * 109.47145 * 330.00485 * 16 14 12 20 20 C 1.39798 * 119.84230 * 359.70930 * 8 7 6 21 21 C 1.38122 * 119.84857 * 0.54002 * 20 8 7 22 22 O 1.35991 * 119.99869 * 179.75265 * 21 20 8 23 23 C 1.42903 * 117.00364 * 359.72868 * 22 21 20 24 24 H 1.08008 * 119.99640 * 180.02562 * 1 2 3 25 25 H 1.07998 * 120.00510 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.00510 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.47137 * 15.00177 * 3 2 1 28 28 H 1.08997 * 109.47242 * 255.00095 * 3 2 1 29 29 H 1.08001 * 119.91887 * 0.02562 * 6 5 4 30 30 H 1.07998 * 119.99944 * 180.02562 * 7 6 5 31 31 H 0.97003 * 119.99562 * 0.02562 * 11 9 8 32 32 H 0.96997 * 119.99673 * 180.02562 * 15 14 12 33 33 H 1.08002 * 120.07218 * 180.29809 * 20 8 7 34 34 H 1.09002 * 109.47382 * 179.97438 * 23 22 21 35 35 H 1.09001 * 109.46938 * 59.99845 * 23 22 21 36 36 H 1.09004 * 109.46926 * 299.99967 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2415 0.9527 5 6 3.9090 2.3443 1.0782 6 6 3.6561 3.4653 0.2987 7 6 4.4465 4.5869 0.4224 8 6 5.5061 4.5981 1.3338 9 6 6.3530 5.7981 1.4682 10 8 7.2744 5.8065 2.2620 11 7 6.1053 6.8859 0.7119 12 6 6.8917 7.9995 0.8361 13 1 7.7103 8.0066 1.5405 14 6 6.6364 9.1213 0.0556 15 7 5.6402 9.1129 -0.8008 16 14 7.7090 10.6412 0.2257 17 1 8.8505 10.5498 -0.7199 18 1 6.9057 11.8512 -0.0837 19 1 8.2238 10.7308 1.6158 20 6 5.7572 3.4714 2.1226 21 6 4.9640 2.3485 1.9896 22 8 5.2086 1.2491 2.7517 23 6 6.3056 1.3234 3.6646 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5401 0.9352 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3854 2.1161 0.2660 28 1 2.4754 1.4869 -0.9926 29 1 2.8374 3.4581 -0.4056 30 1 4.2473 5.4575 -0.1848 31 1 5.3697 6.8796 0.0795 32 1 5.4624 9.8955 -1.3456 33 1 6.5720 3.4778 2.8314 34 1 6.3898 0.3828 4.2089 35 1 6.1368 2.1371 4.3699 36 1 7.2267 1.5072 3.1114 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343028934.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:44 Heat of formation + Delta-G solvation = -62.737729 kcal Electronic energy + Delta-G solvation = -20595.100765 eV Core-core repulsion = 17238.928817 eV Total energy + Delta-G solvation = -3356.171948 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39452 -38.56784 -38.23984 -36.15482 -34.20662 -34.07472 -31.46596 -30.04776 -29.81487 -27.18608 -26.72172 -25.01384 -22.73261 -21.97283 -20.13416 -19.66865 -18.52834 -17.93982 -17.14294 -16.49757 -16.08746 -15.52650 -15.42788 -14.95411 -14.79461 -14.35197 -14.05260 -13.79316 -13.53828 -13.24227 -12.98217 -12.58815 -12.32830 -12.17003 -11.67593 -11.51533 -11.23813 -11.16375 -11.10938 -10.88988 -10.69101 -10.45275 -10.30990 -9.72760 -9.63025 -8.54080 -8.47186 -8.11141 -7.58190 -6.58173 -3.91195 1.34896 1.62683 1.84284 3.12228 3.20125 3.26089 3.35985 3.43772 3.61407 4.07088 4.45618 4.61900 4.81654 4.82457 5.05095 5.06565 5.19278 5.26941 5.27055 5.33684 5.34622 5.54146 5.58042 5.66178 5.68770 5.88001 5.92985 6.26448 6.35288 6.39414 6.62468 6.81340 6.86909 7.18842 7.41079 7.73812 7.94125 8.48322 9.03860 9.39988 9.95387 10.58800 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022281 B = 0.003968 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.398245 B = 7053.956869 C = 8263.650575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.150 4.150 3 C 0.083 3.917 4 O -0.302 6.302 5 C 0.098 3.902 6 C -0.176 4.176 7 C -0.098 4.098 8 C -0.090 4.090 9 C 0.468 3.532 10 O -0.599 6.599 11 N -0.542 5.542 12 C -0.295 4.295 13 H 0.108 0.892 14 C 0.024 3.976 15 N -0.890 5.890 16 Si 0.935 3.065 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.267 1.267 20 C -0.129 4.129 21 C 0.091 3.909 22 O -0.310 6.310 23 C 0.026 3.974 24 H 0.106 0.894 25 H 0.099 0.901 26 H 0.119 0.881 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.394 0.606 32 H 0.276 0.724 33 H 0.145 0.855 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.239 -14.414 0.391 16.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.168 4.168 3 C 0.008 3.992 4 O -0.216 6.216 5 C 0.052 3.948 6 C -0.195 4.195 7 C -0.118 4.118 8 C -0.094 4.094 9 C 0.256 3.744 10 O -0.487 6.487 11 N -0.176 5.176 12 C -0.424 4.424 13 H 0.126 0.874 14 C -0.180 4.180 15 N -0.530 5.530 16 Si 0.761 3.239 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.192 1.192 20 C -0.149 4.149 21 C 0.045 3.955 22 O -0.224 6.224 23 C -0.070 4.070 24 H 0.124 0.876 25 H 0.118 0.882 26 H 0.137 0.863 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.229 0.771 32 H 0.086 0.914 33 H 0.163 0.837 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.784 -14.567 0.875 16.540 hybrid contribution 0.099 1.104 -0.515 1.222 sum -7.685 -13.463 0.360 15.506 Atomic orbital electron populations 1.23858 0.95437 1.02448 0.99668 1.22686 0.95609 0.97928 1.00555 1.21820 0.88207 0.96608 0.92523 1.86100 1.41889 1.35255 1.58379 1.18254 0.92107 0.87417 0.97063 1.20911 1.03036 0.93156 1.02387 1.21139 0.94451 0.98001 0.98208 1.20049 0.96773 0.95383 0.97205 1.17595 0.87326 0.83570 0.85877 1.90590 1.33966 1.83430 1.40679 1.41890 1.29272 1.11788 1.34653 1.19841 1.11449 0.90126 1.21027 0.87420 1.25382 0.97217 0.99714 0.95665 1.69593 1.28623 1.31457 1.23305 0.85776 0.79232 0.79730 0.79144 1.20153 1.20710 1.19165 1.21116 1.00579 0.91399 1.01850 1.18043 0.95334 0.87734 0.94340 1.86110 1.50125 1.34948 1.51261 1.23052 0.88519 1.03243 0.92147 0.87614 0.88225 0.86335 0.91494 0.91022 0.84826 0.84934 0.77102 0.91433 0.83705 0.88558 0.92545 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 14.31 29.02 0.42 -0.94 16 2 C -0.15 -1.40 9.89 -36.02 -0.36 -1.76 16 3 C 0.08 0.91 5.15 36.01 0.19 1.10 16 4 O -0.30 -4.51 9.89 -33.77 -0.33 -4.84 16 5 C 0.10 1.59 6.71 -38.91 -0.26 1.33 16 6 C -0.18 -2.68 9.01 -39.52 -0.36 -3.04 16 7 C -0.10 -1.74 9.53 -39.18 -0.37 -2.11 16 8 C -0.09 -1.86 5.87 -104.97 -0.62 -2.47 16 9 C 0.47 11.72 7.71 -12.49 -0.10 11.62 16 10 O -0.60 -16.82 15.91 5.26 0.08 -16.73 16 11 N -0.54 -13.96 5.23 -11.94 -0.06 -14.03 16 12 C -0.29 -8.15 9.68 -15.00 -0.15 -8.29 16 13 H 0.11 3.10 7.15 -52.49 -0.38 2.72 16 14 C 0.02 0.61 5.50 -17.45 -0.10 0.52 16 15 N -0.89 -23.49 13.05 55.50 0.72 -22.77 16 16 Si 0.93 20.46 29.55 -169.99 -5.02 15.44 16 17 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 C -0.13 -2.43 8.58 -39.04 -0.33 -2.77 16 21 C 0.09 1.57 6.69 -39.18 -0.26 1.31 16 22 O -0.31 -4.97 10.28 -34.37 -0.35 -5.32 16 23 C 0.03 0.31 9.81 101.05 0.99 1.30 16 24 H 0.11 0.64 8.06 -52.48 -0.42 0.22 16 25 H 0.10 0.69 7.90 -52.49 -0.41 0.27 16 26 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 27 H 0.07 0.66 7.37 -51.93 -0.38 0.28 16 28 H 0.07 0.70 7.65 -51.93 -0.40 0.31 16 29 H 0.13 1.60 6.27 -52.49 -0.33 1.27 16 30 H 0.13 2.26 6.39 -52.49 -0.34 1.92 16 31 H 0.39 9.56 5.91 -40.82 -0.24 9.32 16 32 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.15 2.69 5.87 -52.49 -0.31 2.38 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.67 7.65 -51.93 -0.40 0.27 16 36 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 LS Contribution 316.08 15.07 4.76 4.76 Total: -1.00 -31.98 316.08 -5.49 -37.47 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -3.98 Total: 10.23 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -1.31 Total: -4.21 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.66 Total: -36.80 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.60 Total: -26.90 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.98 -5.49 -37.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343028934.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.269 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds