Wall clock time and date at job start Mon Mar 30 2020 01:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.64044 * 2 1 4 4 C 1.54337 * 111.00344 * 236.92151 * 2 1 3 5 5 N 1.47020 * 107.26251 * 219.60203 * 4 2 1 6 6 S 1.65600 * 125.64722 * 178.85041 * 5 4 2 7 7 O 1.42101 * 104.27828 * 153.64668 * 6 5 4 8 8 O 1.42105 * 104.27457 * 25.78767 * 6 5 4 9 9 C 1.81399 * 104.45047 * 269.71693 * 6 5 4 10 10 C 1.52996 * 109.47370 * 179.97438 * 9 6 5 11 11 C 1.53002 * 109.47340 * 179.97438 * 10 9 6 12 12 C 1.50706 * 109.46925 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00196 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99394 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00338 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99426 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47776 * 59.99746 * 16 14 12 18 18 H 1.48503 * 109.46851 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47028 * 299.99350 * 16 14 12 20 20 C 1.47430 * 108.70716 * 358.58875 * 5 4 2 21 21 C 1.54908 * 104.82932 * 24.35344 * 20 5 4 22 22 H 1.08997 * 111.00350 * 81.06960 * 21 20 5 23 23 O 1.42902 * 111.00265 * 204.91632 * 21 20 5 24 24 H 1.09000 * 109.47613 * 296.85642 * 1 2 3 25 25 H 1.09003 * 109.47228 * 56.86345 * 1 2 3 26 26 H 1.08999 * 109.47238 * 176.85610 * 1 2 3 27 27 H 1.08999 * 109.98630 * 100.13064 * 4 2 1 28 28 H 1.08997 * 109.77701 * 338.95838 * 4 2 1 29 29 H 1.09004 * 109.46978 * 59.99836 * 9 6 5 30 30 H 1.09000 * 109.47234 * 299.99799 * 9 6 5 31 31 H 1.09004 * 109.46785 * 60.00231 * 10 9 6 32 32 H 1.09004 * 109.47694 * 300.00330 * 10 9 6 33 33 H 1.09000 * 109.46497 * 60.00561 * 11 10 9 34 34 H 1.09000 * 109.47312 * 300.00340 * 11 10 9 35 35 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 36 36 H 1.09000 * 110.36709 * 143.19808 * 20 5 4 37 37 H 1.09000 * 110.36155 * 265.40784 * 20 5 4 38 38 H 0.96697 * 114.00383 * 298.55103 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0832 -0.7864 -1.2073 5 7 3.2494 -1.5470 -0.7352 6 16 4.1723 -2.5686 -1.6555 7 8 5.4443 -2.5582 -1.0222 8 8 4.0106 -2.0871 -2.9827 9 6 3.3799 -4.1893 -1.4655 10 6 4.1491 -5.2317 -2.2793 11 6 3.4811 -6.5988 -2.1185 12 6 4.2394 -7.6257 -2.9197 13 1 5.1107 -7.3327 -3.4864 14 6 3.8205 -8.9393 -2.9290 15 7 2.7597 -9.2962 -2.2384 16 14 4.7607 -10.2123 -3.9215 17 1 6.1610 -10.2857 -3.4327 18 1 4.1115 -11.5389 -3.7665 19 1 4.7564 -9.8242 -5.3548 20 6 3.4651 -1.2447 0.6915 21 6 2.0789 -0.7934 1.2152 22 1 1.4468 -1.6529 1.4384 23 8 2.2139 0.0514 2.3598 24 1 -0.3634 0.4642 0.9168 25 1 -0.3634 0.5618 -0.8606 26 1 -0.3634 -1.0261 -0.0564 27 1 2.3849 -0.0960 -1.9950 28 1 1.3217 -1.4701 -1.5823 29 1 2.3518 -4.1354 -1.8239 30 1 3.3833 -4.4743 -0.4134 31 1 5.1773 -5.2858 -1.9212 32 1 4.1454 -4.9466 -3.3314 33 1 2.4530 -6.5450 -2.4764 34 1 3.4853 -6.8838 -1.0664 35 1 2.4653 -10.2204 -2.2447 36 1 3.7992 -2.1364 1.2219 37 1 4.1943 -0.4422 0.8032 38 1 2.6433 -0.3743 3.1144 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350943520.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:51 Heat of formation + Delta-G solvation = -136.745404 kcal Electronic energy + Delta-G solvation = -19962.547717 eV Core-core repulsion = 16738.610507 eV Total energy + Delta-G solvation = -3223.937211 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.43785 -36.96775 -35.96693 -35.77940 -34.70116 -32.65979 -32.21180 -28.75709 -27.84243 -26.29083 -23.76330 -22.63551 -20.70039 -20.58647 -18.94424 -17.94351 -17.44787 -16.67709 -16.24861 -15.79374 -15.35313 -14.81450 -14.51198 -14.33018 -14.06955 -13.86152 -13.53454 -12.82891 -12.63164 -12.47274 -12.33532 -12.20561 -11.99776 -11.88806 -11.82009 -11.72209 -11.29027 -11.18778 -10.91536 -10.90174 -10.73943 -10.49877 -10.37883 -9.98103 -9.54172 -9.26936 -8.96948 -8.42655 -6.07797 -4.11104 0.34178 2.65300 3.30824 3.34699 3.37927 3.75034 3.95181 3.96008 4.24948 4.40750 4.48774 4.62418 4.93430 4.98607 5.05809 5.10562 5.14265 5.24958 5.28619 5.39421 5.49344 5.59177 5.65781 5.77934 5.83700 5.88778 6.00214 6.12987 6.27189 6.40816 6.83517 7.26736 7.53656 7.63505 7.89840 8.30171 8.94810 9.53727 11.03381 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028835 B = 0.003753 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.813682 B = 7458.266290 C = 7755.715276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.093 0.907 4 C 0.123 3.877 5 N -1.015 6.015 6 S 2.613 3.387 7 O -0.956 6.956 8 O -0.955 6.955 9 C -0.607 4.607 10 C -0.106 4.106 11 C 0.031 3.969 12 C -0.528 4.528 13 H 0.058 0.942 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.091 3.909 21 C 0.093 3.907 22 H 0.078 0.922 23 O -0.557 6.557 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.021 0.979 34 H 0.020 0.980 35 H 0.262 0.738 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.411 18.204 8.105 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.111 0.889 4 C -0.002 4.002 5 N -0.852 5.852 6 S 2.711 3.289 7 O -0.947 6.947 8 O -0.946 6.946 9 C -0.739 4.739 10 C -0.146 4.146 11 C -0.007 4.007 12 C -0.566 4.566 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.723 3.277 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.035 4.035 21 C 0.033 3.967 22 H 0.096 0.904 23 O -0.362 6.362 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -3.999 18.723 7.210 20.458 hybrid contribution 0.211 -1.656 0.158 1.677 sum -3.787 17.067 7.368 18.971 Atomic orbital electron populations 1.21774 0.93301 1.02466 1.02532 1.22200 0.96614 1.00212 0.92270 0.88900 1.21820 0.86896 0.94918 0.96573 1.58714 1.45345 1.60059 1.21128 1.05120 0.74224 0.76287 0.73281 1.93567 1.37762 1.86854 1.76502 1.93565 1.86307 1.78756 1.35946 1.30585 1.13308 1.19464 1.10564 1.21517 0.98704 0.96644 0.97714 1.19059 0.95892 0.88158 0.97598 1.21218 1.12699 0.93212 1.29481 0.92399 1.25015 0.95094 0.98611 0.95588 1.69945 1.24300 1.17969 1.41230 0.86606 0.80070 0.80398 0.80663 1.20104 1.21223 1.20101 1.22659 0.98266 1.01690 0.80907 1.23122 0.94720 0.92861 0.86018 0.90416 1.86502 1.83199 1.42170 1.24339 0.91741 0.91938 0.92116 0.90478 0.90989 0.85414 0.85519 0.91565 0.91522 0.96109 0.96141 0.92822 0.90289 0.90430 0.77032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.17 37.16 0.34 -0.66 16 2 C -0.09 -0.78 3.26 -88.78 -0.29 -1.07 16 3 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.12 1.22 6.50 -3.06 -0.02 1.20 16 5 N -1.01 -11.86 3.62 -111.41 -0.40 -12.26 16 6 S 2.61 39.33 5.65 -107.50 -0.61 38.72 16 7 O -0.96 -16.98 17.60 -57.54 -1.01 -17.99 16 8 O -0.96 -16.98 17.60 -57.54 -1.01 -18.00 16 9 C -0.61 -9.31 6.18 37.16 0.23 -9.08 16 10 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 11 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 12 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 13 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 16 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.09 0.88 6.62 -2.53 -0.02 0.87 16 21 C 0.09 0.77 3.88 -24.58 -0.10 0.67 16 22 H 0.08 0.57 8.05 -51.93 -0.42 0.16 16 23 O -0.56 -4.38 13.47 -35.23 -0.47 -4.85 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.63 7.78 -51.93 -0.40 0.22 16 29 H 0.13 1.75 8.14 -51.92 -0.42 1.33 16 30 H 0.13 1.72 8.14 -51.92 -0.42 1.30 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.38 1.46 9.11 45.56 0.42 1.87 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -35.40 329.19 -8.81 -44.21 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -5.44 Total: -2.26 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: -0.54 Total: -23.30 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.33 Total: -37.98 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -2.50 Total: -40.84 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 39.33 SS G_CDS: -0.61 Total: 38.72 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.40 -8.81 -44.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350943520.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.535 kcal (2) G-P(sol) polarization free energy of solvation -35.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds