Wall clock time and date at job start Mon Mar 30 2020 01:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.64044 * 2 1 4 4 C 1.54337 * 111.00344 * 236.92151 * 2 1 3 5 5 N 1.47020 * 107.26251 * 219.60203 * 4 2 1 6 6 S 1.65600 * 125.64722 * 178.85041 * 5 4 2 7 7 O 1.42101 * 104.27828 * 153.64668 * 6 5 4 8 8 O 1.42105 * 104.27457 * 25.78767 * 6 5 4 9 9 C 1.81399 * 104.45047 * 269.71693 * 6 5 4 10 10 C 1.52996 * 109.47370 * 179.97438 * 9 6 5 11 11 C 1.53002 * 109.47340 * 179.97438 * 10 9 6 12 12 C 1.50706 * 109.46925 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00196 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99394 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00338 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99426 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47776 * 59.99746 * 16 14 12 18 18 H 1.48503 * 109.46851 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47028 * 299.99350 * 16 14 12 20 20 C 1.47430 * 108.70716 * 358.58875 * 5 4 2 21 21 C 1.54908 * 104.82932 * 24.35344 * 20 5 4 22 22 H 1.08997 * 111.00350 * 81.06960 * 21 20 5 23 23 O 1.42902 * 111.00265 * 204.91632 * 21 20 5 24 24 H 1.09000 * 109.47613 * 296.85642 * 1 2 3 25 25 H 1.09003 * 109.47228 * 56.86345 * 1 2 3 26 26 H 1.08999 * 109.47238 * 176.85610 * 1 2 3 27 27 H 1.08999 * 109.98630 * 100.13064 * 4 2 1 28 28 H 1.08997 * 109.77701 * 338.95838 * 4 2 1 29 29 H 1.09004 * 109.46978 * 59.99836 * 9 6 5 30 30 H 1.09000 * 109.47234 * 299.99799 * 9 6 5 31 31 H 1.09004 * 109.46785 * 60.00231 * 10 9 6 32 32 H 1.09004 * 109.47694 * 300.00330 * 10 9 6 33 33 H 1.09000 * 109.46497 * 60.00561 * 11 10 9 34 34 H 1.09000 * 109.47312 * 300.00340 * 11 10 9 35 35 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 36 36 H 1.09000 * 110.36709 * 143.19808 * 20 5 4 37 37 H 1.09000 * 110.36155 * 265.40784 * 20 5 4 38 38 H 0.96697 * 114.00383 * 298.55103 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0832 -0.7864 -1.2073 5 7 3.2494 -1.5470 -0.7352 6 16 4.1723 -2.5686 -1.6555 7 8 5.4443 -2.5582 -1.0222 8 8 4.0106 -2.0871 -2.9827 9 6 3.3799 -4.1893 -1.4655 10 6 4.1491 -5.2317 -2.2793 11 6 3.4811 -6.5988 -2.1185 12 6 4.2394 -7.6257 -2.9197 13 1 5.1107 -7.3327 -3.4864 14 6 3.8205 -8.9393 -2.9290 15 7 2.7597 -9.2962 -2.2384 16 14 4.7607 -10.2123 -3.9215 17 1 6.1610 -10.2857 -3.4327 18 1 4.1115 -11.5389 -3.7665 19 1 4.7564 -9.8242 -5.3548 20 6 3.4651 -1.2447 0.6915 21 6 2.0789 -0.7934 1.2152 22 1 1.4468 -1.6529 1.4384 23 8 2.2139 0.0514 2.3598 24 1 -0.3634 0.4642 0.9168 25 1 -0.3634 0.5618 -0.8606 26 1 -0.3634 -1.0261 -0.0564 27 1 2.3849 -0.0960 -1.9950 28 1 1.3217 -1.4701 -1.5823 29 1 2.3518 -4.1354 -1.8239 30 1 3.3833 -4.4743 -0.4134 31 1 5.1773 -5.2858 -1.9212 32 1 4.1454 -4.9466 -3.3314 33 1 2.4530 -6.5450 -2.4764 34 1 3.4853 -6.8838 -1.0664 35 1 2.4653 -10.2204 -2.2447 36 1 3.7992 -2.1364 1.2219 37 1 4.1943 -0.4422 0.8032 38 1 2.6433 -0.3743 3.1144 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350943520.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:51 Heat of formation + Delta-G solvation = -164.668229 kcal Electronic energy + Delta-G solvation = -19963.758542 eV Core-core repulsion = 16738.610507 eV Total energy + Delta-G solvation = -3225.148035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.15079 -38.28444 -37.13277 -36.61408 -36.48084 -34.18095 -33.37200 -29.69428 -29.48312 -27.00774 -25.61772 -23.46071 -22.30103 -21.36791 -20.06125 -18.88821 -18.54525 -18.31553 -17.37054 -17.21461 -16.50991 -16.31291 -15.77948 -15.49739 -14.85058 -14.67097 -14.49753 -14.25042 -14.08479 -13.60852 -13.49548 -13.31388 -13.23504 -13.22285 -13.01436 -12.93787 -12.74236 -12.67235 -12.40969 -12.18016 -11.90504 -11.77165 -11.42355 -11.35617 -11.18024 -10.97347 -10.57892 -10.00527 -8.23487 -6.34668 -0.87580 1.40127 1.42463 1.50443 1.58288 2.39351 2.74479 2.95906 3.10145 3.14530 3.55182 3.62503 3.72630 3.90992 4.01227 4.24252 4.34925 4.36045 4.42488 4.56048 4.61136 4.73210 4.84251 4.88761 4.92688 5.00826 5.04733 5.10802 5.19857 5.36439 5.42704 5.43679 5.60993 5.77942 6.18381 6.80501 6.87569 7.34766 8.87744 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028835 B = 0.003753 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.813682 B = 7458.266290 C = 7755.715276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 H 0.089 0.911 4 C 0.113 3.887 5 N -1.012 6.012 6 S 2.640 3.360 7 O -0.985 6.985 8 O -0.984 6.984 9 C -0.605 4.605 10 C -0.107 4.107 11 C 0.032 3.968 12 C -0.555 4.555 13 H 0.060 0.940 14 C 0.005 3.995 15 N -0.929 5.929 16 Si 0.962 3.038 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.268 1.268 20 C 0.082 3.918 21 C 0.101 3.899 22 H 0.091 0.909 23 O -0.568 6.568 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.004 0.996 34 H 0.004 0.996 35 H 0.265 0.735 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.701 18.608 8.500 20.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 H 0.107 0.893 4 C -0.011 4.011 5 N -0.851 5.851 6 S 2.738 3.262 7 O -0.975 6.975 8 O -0.975 6.975 9 C -0.736 4.736 10 C -0.146 4.146 11 C -0.007 4.007 12 C -0.593 4.593 13 H 0.078 0.922 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.787 3.213 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.193 1.193 20 C -0.044 4.044 21 C 0.041 3.959 22 H 0.109 0.891 23 O -0.375 6.375 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -4.275 19.127 7.613 21.025 hybrid contribution 0.269 -1.713 0.101 1.737 sum -4.006 17.414 7.714 19.463 Atomic orbital electron populations 1.21757 0.92092 1.02935 1.02953 1.22199 0.97514 0.99703 0.91693 0.89310 1.22071 0.86508 0.95202 0.97352 1.58357 1.45652 1.59120 1.21992 1.04042 0.73640 0.76000 0.72528 1.93526 1.39770 1.87276 1.76935 1.93523 1.86710 1.79245 1.37984 1.30518 1.13632 1.18434 1.11005 1.21331 0.98974 0.95518 0.98821 1.18957 0.95158 0.90575 0.95967 1.21715 1.13165 0.94448 1.29980 0.92193 1.25917 0.95994 1.00845 0.96633 1.70057 1.25714 1.18591 1.42516 0.85541 0.78870 0.77662 0.79256 1.19246 1.20567 1.19268 1.22912 0.99483 1.02287 0.79702 1.23061 0.93650 0.93144 0.86088 0.89112 1.86471 1.83465 1.42734 1.24880 0.91611 0.91220 0.91655 0.90909 0.89603 0.83611 0.83596 0.91545 0.91547 0.97795 0.97778 0.92597 0.89051 0.90810 0.75025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.17 71.98 0.66 -0.98 16 2 C -0.09 -1.35 3.26 -9.60 -0.03 -1.38 16 3 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 4 C 0.11 2.06 6.50 86.73 0.56 2.62 16 5 N -1.01 -22.11 3.62 -506.40 -1.83 -23.94 16 6 S 2.64 77.09 5.65 -56.49 -0.32 76.77 16 7 O -0.98 -34.32 17.60 -127.65 -2.25 -36.57 16 8 O -0.98 -34.46 17.60 -127.65 -2.25 -36.71 16 9 C -0.60 -17.85 6.18 71.98 0.44 -17.41 16 10 C -0.11 -4.32 5.16 30.59 0.16 -4.16 16 11 C 0.03 1.62 4.97 29.85 0.15 1.77 16 12 C -0.56 -31.44 9.11 25.60 0.23 -31.21 16 13 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 14 C 0.00 0.26 5.46 84.66 0.46 0.72 16 15 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 16 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 C 0.08 1.44 6.62 86.85 0.57 2.01 16 21 C 0.10 1.43 3.88 31.99 0.12 1.55 16 22 H 0.09 1.07 8.05 -2.39 -0.02 1.05 16 23 O -0.57 -7.62 13.47 -148.98 -2.01 -9.63 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.72 8.08 -2.39 -0.02 0.70 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.09 1.32 7.78 -2.39 -0.02 1.30 16 29 H 0.15 3.76 8.14 -2.39 -0.02 3.74 16 30 H 0.15 3.73 8.14 -2.39 -0.02 3.71 16 31 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 32 H 0.07 2.63 8.14 -2.39 -0.02 2.62 16 33 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.40 2.11 9.11 -74.06 -0.67 1.44 16 Total: -1.00 -75.13 329.19 -2.64 -77.77 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.36 Total: 7.85 kcal Atomic # 6 Polarization: -49.81 SS G_CDS: 3.34 Total: -46.47 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -1.55 Total: -78.93 kcal Atomic # 8 Polarization: -76.41 SS G_CDS: -6.50 Total: -82.91 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 77.09 SS G_CDS: -0.32 Total: 76.77 kcal Total: -75.13 -2.64 -77.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350943520.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.898 kcal (2) G-P(sol) polarization free energy of solvation -75.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds