Wall clock time and date at job start Mon Mar 30 2020 01:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.78007 * 2 1 4 4 C 1.54421 * 110.76187 * 123.27297 * 2 1 3 5 5 N 1.47022 * 107.28332 * 140.54035 * 4 2 1 6 6 S 1.65604 * 125.64953 * 181.02699 * 5 4 2 7 7 O 1.42100 * 104.27785 * 26.08985 * 6 5 4 8 8 O 1.42098 * 104.27668 * 153.94499 * 6 5 4 9 9 C 1.81396 * 104.44881 * 270.01665 * 6 5 4 10 10 C 1.53002 * 109.47203 * 179.97438 * 9 6 5 11 11 C 1.53001 * 109.47095 * 180.02562 * 10 9 6 12 12 C 1.50698 * 109.46774 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00492 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99840 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99695 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00115 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46781 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46986 * 119.99684 * 16 14 12 19 19 H 1.48490 * 109.47080 * 239.99920 * 16 14 12 20 20 C 1.47426 * 108.70231 * 1.06282 * 5 4 2 21 21 C 1.54906 * 104.83170 * 335.87147 * 20 5 4 22 22 H 1.08998 * 111.00301 * 155.12076 * 21 20 5 23 23 O 1.42905 * 111.00540 * 278.93429 * 21 20 5 24 24 H 1.08999 * 109.46962 * 183.23515 * 1 2 3 25 25 H 1.08992 * 109.47035 * 303.24032 * 1 2 3 26 26 H 1.09001 * 109.46845 * 63.23677 * 1 2 3 27 27 H 1.09000 * 109.87550 * 21.12233 * 4 2 1 28 28 H 1.09000 * 110.00878 * 260.03635 * 4 2 1 29 29 H 1.08993 * 109.47446 * 300.00129 * 9 6 5 30 30 H 1.09003 * 109.46925 * 60.00322 * 9 6 5 31 31 H 1.09001 * 109.46982 * 300.00201 * 10 9 6 32 32 H 1.09003 * 109.46757 * 60.00415 * 10 9 6 33 33 H 1.09001 * 109.47194 * 299.99856 * 11 10 9 34 34 H 1.08994 * 109.47326 * 60.00219 * 11 10 9 35 35 H 0.96998 * 119.99035 * 180.02562 * 15 14 12 36 36 H 1.08997 * 110.36465 * 217.02944 * 20 5 4 37 37 H 1.08997 * 110.45901 * 94.75265 * 20 5 4 38 38 H 0.96696 * 114.00036 * 295.41908 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0774 -0.7922 1.2072 5 7 3.2457 -1.5514 0.7380 6 16 4.1652 -2.5750 1.6595 7 8 3.2817 -3.0157 2.6815 8 8 4.7162 -3.4904 0.7226 9 6 5.4638 -1.5158 2.3538 10 6 6.3896 -2.3557 3.2361 11 6 7.4846 -1.4621 3.8222 12 6 8.3967 -2.2895 4.6908 13 1 8.2135 -3.3469 4.8129 14 6 9.4646 -1.6965 5.3304 15 7 9.6873 -0.4088 5.1821 16 14 10.5948 -2.7219 6.4076 17 1 10.1317 -4.1329 6.4087 18 1 11.9796 -2.6564 5.8753 19 1 10.5720 -2.1918 7.7945 20 6 3.4637 -1.2498 -0.6885 21 6 2.0790 -0.7954 -1.2138 22 1 2.1845 -0.1520 -2.0872 23 8 1.2480 -1.9204 -1.5071 24 1 -0.3633 -1.0260 0.0580 25 1 -0.3633 0.5633 0.8595 26 1 -0.3633 0.4628 -0.9176 27 1 1.3147 -1.4771 1.5777 28 1 2.3753 -0.1057 1.9997 29 1 6.0402 -1.0691 1.5437 30 1 5.0080 -0.7276 2.9530 31 1 5.8129 -2.8020 4.0463 32 1 6.8454 -3.1442 2.6373 33 1 8.0613 -1.0154 3.0123 34 1 7.0285 -0.6739 4.4211 35 1 10.4388 0.0083 5.6318 36 1 3.7963 -2.1424 -1.2184 37 1 4.1938 -0.4484 -0.8013 38 1 1.5773 -2.4755 -2.2272 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350943522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:54 Heat of formation + Delta-G solvation = -163.850255 kcal Electronic energy + Delta-G solvation = -20030.283667 eV Core-core repulsion = 16805.171102 eV Total energy + Delta-G solvation = -3225.112565 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.15973 -38.26940 -37.11285 -36.50271 -36.23854 -34.18956 -33.28801 -29.75536 -29.60501 -26.96745 -25.62808 -23.41799 -22.32221 -21.13878 -20.06430 -18.87506 -18.63960 -18.31182 -17.32224 -17.07526 -16.52250 -16.06370 -15.91072 -15.53627 -15.01674 -14.62408 -14.51686 -14.08885 -13.79477 -13.55302 -13.47178 -13.33626 -13.30609 -13.23148 -13.02120 -12.95167 -12.79008 -12.63409 -12.18818 -12.10362 -11.83447 -11.79306 -11.42549 -11.39931 -11.11459 -10.97156 -10.59880 -9.87868 -8.24733 -6.35837 -0.84688 1.38765 1.39391 1.52835 1.65131 2.38560 2.77048 2.98101 3.08830 3.35765 3.44450 3.71174 3.72812 3.88811 4.04752 4.30499 4.34746 4.51218 4.58959 4.61195 4.64528 4.71822 4.83311 4.88746 4.92697 5.00891 5.13023 5.15403 5.21614 5.42537 5.42629 5.55688 5.59535 5.76922 6.17352 6.79566 6.93617 7.33630 8.86992 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.039806 B = 0.003582 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.245450 B = 7815.546504 C = 8000.388957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.091 4.091 3 H 0.122 0.878 4 C 0.113 3.887 5 N -1.010 6.010 6 S 2.639 3.361 7 O -0.990 6.990 8 O -0.986 6.986 9 C -0.605 4.605 10 C -0.107 4.107 11 C 0.031 3.969 12 C -0.553 4.553 13 H 0.059 0.941 14 C 0.003 3.997 15 N -0.929 5.929 16 Si 0.964 3.036 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.276 1.276 20 C 0.071 3.929 21 C 0.100 3.900 22 H 0.112 0.888 23 O -0.574 6.574 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.004 0.996 34 H 0.003 0.997 35 H 0.265 0.735 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.891 3.968 -15.203 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.111 4.111 3 H 0.140 0.860 4 C -0.012 4.012 5 N -0.849 5.849 6 S 2.737 3.263 7 O -0.981 6.981 8 O -0.976 6.976 9 C -0.736 4.736 10 C -0.146 4.146 11 C -0.007 4.007 12 C -0.591 4.591 13 H 0.078 0.922 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.789 3.211 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.202 1.202 20 C -0.054 4.054 21 C 0.039 3.961 22 H 0.129 0.871 23 O -0.382 6.382 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.023 0.977 34 H 0.022 0.978 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.118 0.882 38 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -17.262 3.343 -14.520 22.803 hybrid contribution 1.518 -0.090 0.463 1.590 sum -15.744 3.253 -14.056 21.355 Atomic orbital electron populations 1.21545 0.93060 1.01845 1.02521 1.22448 0.97460 0.99404 0.91753 0.86000 1.22048 0.86591 0.94387 0.98162 1.58355 1.41759 1.63867 1.20954 1.03959 0.74715 0.74569 0.73010 1.93512 1.63737 1.80184 1.60623 1.93505 1.80841 1.60998 1.62284 1.30532 1.16016 1.15138 1.11955 1.21328 0.97087 0.98266 0.97951 1.18962 0.92445 0.94421 0.94854 1.21763 1.12122 0.95901 1.29340 0.92246 1.25942 0.99306 0.96219 0.98066 1.70078 1.30598 1.11597 1.44634 0.85410 0.78378 0.79038 0.78320 1.18859 1.20110 1.20151 1.23151 1.00167 1.02409 0.79671 1.23085 0.87249 0.87907 0.97839 0.87089 1.86478 1.51231 1.41124 1.59370 0.93537 0.91791 0.91176 0.92627 0.90210 0.83576 0.83840 0.91729 0.91553 0.97724 0.97835 0.92579 0.90072 0.88161 0.75692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 8.76 71.98 0.63 -1.14 16 2 C -0.09 -1.22 3.48 -9.57 -0.03 -1.25 16 3 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 4 C 0.11 2.25 6.50 86.76 0.56 2.81 16 5 N -1.01 -23.13 3.62 -506.26 -1.83 -24.96 16 6 S 2.64 81.28 5.65 -56.49 -0.32 80.96 16 7 O -0.99 -37.05 17.60 -127.65 -2.25 -39.29 16 8 O -0.99 -35.38 17.28 -127.65 -2.21 -37.58 16 9 C -0.61 -18.72 6.18 71.98 0.44 -18.28 16 10 C -0.11 -4.45 5.16 30.60 0.16 -4.30 16 11 C 0.03 1.64 4.97 29.85 0.15 1.79 16 12 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 13 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 14 C 0.00 0.17 5.46 84.66 0.46 0.63 16 15 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 16 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 17 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 C 0.07 1.16 6.81 86.85 0.59 1.75 16 21 C 0.10 1.26 4.16 31.99 0.13 1.40 16 22 H 0.11 0.71 8.14 -2.39 -0.02 0.70 16 23 O -0.57 -9.13 12.22 -148.98 -1.82 -10.95 16 24 H 0.05 0.83 7.44 -2.39 -0.02 0.81 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 1.31 7.77 -2.39 -0.02 1.29 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.15 3.91 8.14 -2.39 -0.02 3.89 16 30 H 0.14 3.94 8.14 -2.39 -0.02 3.92 16 31 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 36 H 0.08 1.43 7.67 -2.39 -0.02 1.41 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.14 16 38 H 0.39 3.44 9.12 -74.06 -0.68 2.76 16 Total: -1.00 -77.99 326.85 -2.42 -80.41 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 0.36 Total: 8.57 kcal Atomic # 6 Polarization: -51.44 SS G_CDS: 3.33 Total: -48.10 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -1.55 Total: -80.39 kcal Atomic # 8 Polarization: -81.55 SS G_CDS: -6.27 Total: -87.83 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 81.28 SS G_CDS: -0.32 Total: 80.96 kcal Total: -77.99 -2.42 -80.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350943522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.442 kcal (2) G-P(sol) polarization free energy of solvation -77.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds