Wall clock time and date at job start Mon Mar 30 2020 01:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 O 1.21285 * 120.00039 * 239.99931 * 4 2 1 6 6 N 1.34774 * 119.99942 * 59.99862 * 4 2 1 7 7 C 1.46500 * 119.99881 * 180.02562 * 6 4 2 8 8 C 1.50701 * 109.47209 * 179.97438 * 7 6 4 9 9 H 1.07999 * 119.99742 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00001 * 180.02562 * 8 7 6 11 11 N 1.31507 * 120.00096 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99926 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46872 * 59.99743 * 12 10 8 14 14 H 1.48494 * 109.46938 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47134 * 299.99917 * 12 10 8 16 16 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 17 17 C 1.38254 * 119.92500 * 60.00234 * 16 2 1 18 18 C 1.38242 * 120.13880 * 179.97438 * 17 16 2 19 19 C 1.38544 * 120.03047 * 0.02562 * 18 17 16 20 20 C 1.39262 * 119.82861 * 359.96997 * 19 18 17 21 21 C 1.38236 * 119.92799 * 239.72294 * 16 2 1 22 22 O 1.36505 * 108.63978 * 180.02562 * 20 19 18 23 23 C 1.43981 * 105.48579 * 342.72588 * 22 20 19 24 24 O 1.36502 * 131.52985 * 179.97438 * 19 18 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 28 28 H 0.96998 * 120.00125 * 359.97438 * 6 4 2 29 29 H 1.09000 * 109.47175 * 300.00022 * 7 6 4 30 30 H 1.09002 * 109.47092 * 59.99980 * 7 6 4 31 31 H 0.97006 * 119.99802 * 180.02562 * 11 10 8 32 32 H 1.08001 * 119.93391 * 359.95038 * 17 16 2 33 33 H 1.08003 * 119.98225 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.98680 * 0.02562 * 21 16 2 35 35 H 1.09001 * 110.57448 * 268.55611 * 23 22 20 36 36 H 1.08999 * 110.57419 * 145.67697 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4545 7 6 2.1945 -0.9408 -3.6507 8 6 1.6918 -0.2307 -4.8812 9 1 1.0706 0.6472 -4.7820 10 6 2.0239 -0.7023 -6.1335 11 7 2.7799 -1.7716 -6.2542 12 14 1.4001 0.1775 -7.6587 13 1 1.8951 1.5776 -7.6597 14 1 1.8947 -0.5228 -8.8711 15 1 -0.0849 0.1775 -7.6576 16 6 2.0323 -0.7104 1.2305 17 6 1.6974 -2.0341 1.4477 18 6 2.1563 -2.6902 2.5747 19 6 2.9531 -2.0217 3.4900 20 6 3.2904 -0.6885 3.2711 21 6 2.8317 -0.0388 2.1365 22 8 4.0744 -0.2616 4.3038 23 6 3.8768 -1.2214 5.3587 24 8 3.5252 -2.4302 4.6600 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 1.1487 0.5386 -2.5435 29 1 3.2845 -0.9412 -3.6509 30 1 1.8308 -1.9683 -3.6506 31 1 3.0139 -2.1032 -7.1352 32 1 1.0758 -2.5565 0.7357 33 1 1.8928 -3.7241 2.7421 34 1 3.0951 0.9939 1.9622 35 1 3.0641 -0.9083 6.0141 36 1 4.7965 -1.3608 5.9269 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351603048.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:39 Heat of formation + Delta-G solvation = -81.403904 kcal Electronic energy + Delta-G solvation = -20750.053321 eV Core-core repulsion = 17393.071947 eV Total energy + Delta-G solvation = -3356.981374 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.19292 -39.57310 -37.59669 -36.33428 -34.19321 -33.60080 -32.22923 -30.55656 -29.04181 -27.19300 -25.88913 -24.53738 -23.01961 -22.88844 -21.55807 -19.55627 -17.95406 -17.78952 -17.49228 -16.62772 -16.37282 -15.61050 -15.25469 -14.92030 -14.51784 -14.40875 -13.96866 -13.88222 -13.51929 -13.12676 -13.04680 -12.89693 -12.70697 -12.30144 -11.98750 -11.80068 -11.60138 -11.41147 -11.02547 -10.91058 -10.83054 -10.71305 -10.31789 -9.42038 -9.08378 -8.75761 -8.73286 -7.99847 -7.89072 -6.17269 -4.24491 1.15315 1.26685 2.69084 3.24561 3.29543 3.30855 3.33295 3.36108 3.54495 4.14764 4.37844 4.48714 4.50275 4.61425 4.77141 4.97375 5.12565 5.18692 5.20580 5.29204 5.36127 5.49304 5.54091 5.75632 5.85725 6.03418 6.07586 6.12786 6.29211 6.42438 6.59335 7.10295 7.29960 7.42031 7.51102 7.65125 7.96355 8.61011 8.76688 9.08292 9.42216 10.92830 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.042384 B = 0.003250 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.467974 B = 8612.630727 C = 8757.558172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.073 4.073 3 H 0.102 0.898 4 C 0.502 3.498 5 O -0.546 6.546 6 N -0.710 5.710 7 C 0.250 3.750 8 C -0.544 4.544 9 H 0.062 0.938 10 C 0.064 3.936 11 N -0.885 5.885 12 Si 0.903 3.097 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.275 1.275 16 C -0.048 4.048 17 C -0.070 4.070 18 C -0.100 4.100 19 C 0.025 3.975 20 C 0.024 3.976 21 C -0.092 4.092 22 O -0.311 6.311 23 C 0.214 3.786 24 O -0.312 6.312 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.390 0.610 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.266 0.734 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.080 0.920 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.866 3.910 20.305 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.094 4.094 3 H 0.120 0.880 4 C 0.286 3.714 5 O -0.425 6.425 6 N -0.358 5.358 7 C 0.130 3.870 8 C -0.583 4.583 9 H 0.081 0.919 10 C -0.140 4.140 11 N -0.523 5.523 12 Si 0.731 3.269 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.201 1.201 16 C -0.048 4.048 17 C -0.088 4.088 18 C -0.119 4.119 19 C -0.019 4.019 20 C -0.020 4.020 21 C -0.111 4.111 22 O -0.228 6.228 23 C 0.102 3.898 24 O -0.228 6.228 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.223 0.777 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.098 0.902 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.069 3.031 20.321 20.774 hybrid contribution -0.309 0.812 -0.718 1.127 sum -3.378 3.843 19.603 20.260 Atomic orbital electron populations 1.21788 0.92025 1.03158 1.02739 1.20312 0.97689 1.00265 0.91152 0.87968 1.20223 0.81380 0.85193 0.84647 1.90693 1.38429 1.26632 1.86714 1.46439 1.51720 1.31246 1.06421 1.19103 0.95313 0.92846 0.79782 1.21188 1.33288 1.13200 0.90595 0.91945 1.24949 0.94835 0.94970 0.99228 1.69963 1.35585 1.22402 1.24311 0.86481 0.79143 0.79616 0.81705 1.20064 1.21080 1.20054 1.19078 0.97297 0.94180 0.94276 1.20753 0.99317 0.93649 0.95097 1.20038 0.97681 1.00684 0.93455 1.19770 0.99316 0.92667 0.90164 1.19625 0.96440 0.92785 0.93140 1.19864 0.98726 1.00449 0.92045 1.87339 1.62574 1.49244 1.23622 1.25550 1.01954 0.73575 0.88737 1.87335 1.75345 1.30376 1.29781 0.91749 0.91630 0.91252 0.77688 0.95558 0.95513 0.92376 0.84457 0.84816 0.84851 0.90212 0.85492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.90 37.16 0.33 -1.19 16 2 C -0.07 -0.99 2.90 -92.92 -0.27 -1.26 16 3 H 0.10 1.17 7.87 -51.93 -0.41 0.76 16 4 C 0.50 9.58 7.02 -10.99 -0.08 9.50 16 5 O -0.55 -12.74 15.10 5.55 0.08 -12.66 16 6 N -0.71 -14.37 5.44 -61.47 -0.33 -14.70 16 7 C 0.25 6.51 5.43 -5.19 -0.03 6.49 16 8 C -0.54 -14.54 9.28 -34.44 -0.32 -14.86 16 9 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 12 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 C -0.05 -0.67 4.40 -104.62 -0.46 -1.13 16 17 C -0.07 -0.99 7.92 -39.57 -0.31 -1.31 16 18 C -0.10 -1.35 10.06 -39.47 -0.40 -1.75 16 19 C 0.02 0.35 7.15 -39.09 -0.28 0.07 16 20 C 0.02 0.34 7.15 -39.09 -0.28 0.06 16 21 C -0.09 -1.25 9.68 -39.47 -0.38 -1.63 16 22 O -0.31 -4.01 11.40 -45.71 -0.52 -4.54 16 23 C 0.21 2.02 8.89 101.05 0.90 2.92 16 24 O -0.31 -4.02 11.40 -45.69 -0.52 -4.54 16 25 H 0.06 0.72 7.38 -51.93 -0.38 0.34 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.71 7.56 -51.93 -0.39 0.32 16 28 H 0.39 6.68 7.74 -40.82 -0.32 6.37 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 32 H 0.14 1.92 7.50 -52.49 -0.39 1.52 16 33 H 0.13 1.52 8.06 -52.48 -0.42 1.09 16 34 H 0.13 1.53 7.94 -52.49 -0.42 1.11 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.13 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 312.40 15.07 4.71 4.71 Total: -1.00 -33.36 312.40 -6.93 -40.29 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.38 Total: 3.45 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.67 Total: -2.42 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.40 Total: -39.90 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.96 Total: -21.73 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.36 -6.93 -40.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351603048.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.116 kcal (2) G-P(sol) polarization free energy of solvation -33.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds