Wall clock time and date at job start Mon Mar 30 2020 01:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 O 1.21285 * 120.00039 * 239.99931 * 4 2 1 6 6 N 1.34774 * 119.99942 * 59.99862 * 4 2 1 7 7 C 1.46500 * 119.99881 * 180.02562 * 6 4 2 8 8 C 1.50701 * 109.47209 * 179.97438 * 7 6 4 9 9 H 1.07999 * 119.99742 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00001 * 180.02562 * 8 7 6 11 11 N 1.31507 * 120.00096 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99926 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46872 * 59.99743 * 12 10 8 14 14 H 1.48494 * 109.46938 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47134 * 299.99917 * 12 10 8 16 16 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 17 17 C 1.38254 * 119.92500 * 60.00234 * 16 2 1 18 18 C 1.38242 * 120.13880 * 179.97438 * 17 16 2 19 19 C 1.38544 * 120.03047 * 0.02562 * 18 17 16 20 20 C 1.39262 * 119.82861 * 359.96997 * 19 18 17 21 21 C 1.38236 * 119.92799 * 239.72294 * 16 2 1 22 22 O 1.36505 * 108.63978 * 180.02562 * 20 19 18 23 23 C 1.43981 * 105.48579 * 342.72588 * 22 20 19 24 24 O 1.36502 * 131.52985 * 179.97438 * 19 18 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 28 28 H 0.96998 * 120.00125 * 359.97438 * 6 4 2 29 29 H 1.09000 * 109.47175 * 300.00022 * 7 6 4 30 30 H 1.09002 * 109.47092 * 59.99980 * 7 6 4 31 31 H 0.97006 * 119.99802 * 180.02562 * 11 10 8 32 32 H 1.08001 * 119.93391 * 359.95038 * 17 16 2 33 33 H 1.08003 * 119.98225 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.98680 * 0.02562 * 21 16 2 35 35 H 1.09001 * 110.57448 * 268.55611 * 23 22 20 36 36 H 1.08999 * 110.57419 * 145.67697 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4545 7 6 2.1945 -0.9408 -3.6507 8 6 1.6918 -0.2307 -4.8812 9 1 1.0706 0.6472 -4.7820 10 6 2.0239 -0.7023 -6.1335 11 7 2.7799 -1.7716 -6.2542 12 14 1.4001 0.1775 -7.6587 13 1 1.8951 1.5776 -7.6597 14 1 1.8947 -0.5228 -8.8711 15 1 -0.0849 0.1775 -7.6576 16 6 2.0323 -0.7104 1.2305 17 6 1.6974 -2.0341 1.4477 18 6 2.1563 -2.6902 2.5747 19 6 2.9531 -2.0217 3.4900 20 6 3.2904 -0.6885 3.2711 21 6 2.8317 -0.0388 2.1365 22 8 4.0744 -0.2616 4.3038 23 6 3.8768 -1.2214 5.3587 24 8 3.5252 -2.4302 4.6600 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 1.1487 0.5386 -2.5435 29 1 3.2845 -0.9412 -3.6509 30 1 1.8308 -1.9683 -3.6506 31 1 3.0139 -2.1032 -7.1352 32 1 1.0758 -2.5565 0.7357 33 1 1.8928 -3.7241 2.7421 34 1 3.0951 0.9939 1.9622 35 1 3.0641 -0.9083 6.0141 36 1 4.7965 -1.3608 5.9269 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351603048.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:39 Heat of formation + Delta-G solvation = -104.853433 kcal Electronic energy + Delta-G solvation = -20751.070169 eV Core-core repulsion = 17393.071947 eV Total energy + Delta-G solvation = -3357.998222 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.13591 -40.98409 -38.83696 -37.28203 -36.09457 -34.85789 -34.08663 -31.57934 -30.15804 -29.03553 -26.71044 -25.79030 -24.63433 -23.97528 -22.92583 -21.10172 -19.22179 -18.88283 -18.43519 -18.15208 -17.46049 -17.16437 -16.84694 -16.26362 -16.07153 -15.46374 -15.42567 -14.85693 -14.72623 -14.54028 -14.13152 -14.00086 -13.98125 -13.73303 -13.65168 -13.14014 -12.92696 -12.69085 -12.58077 -12.50577 -12.21728 -11.89390 -11.65248 -11.48197 -10.77075 -10.63575 -9.84921 -9.77245 -9.01811 -8.27026 -6.43508 0.08905 0.22618 1.44733 1.48583 1.56680 1.77526 1.81477 2.29457 2.43794 2.52766 2.81427 3.08002 3.48546 3.56006 3.81001 3.93153 4.04099 4.15512 4.17587 4.29112 4.32978 4.43245 4.56187 4.87453 4.93412 5.03273 5.05620 5.15599 5.20283 5.27642 5.33884 5.39529 5.51848 5.54661 5.72917 5.87618 6.12232 6.67898 6.95025 7.25977 7.53613 8.84861 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.042384 B = 0.003250 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.467974 B = 8612.630727 C = 8757.558172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.057 4.057 3 H 0.133 0.867 4 C 0.499 3.501 5 O -0.594 6.594 6 N -0.704 5.704 7 C 0.267 3.733 8 C -0.555 4.555 9 H 0.086 0.914 10 C 0.003 3.997 11 N -0.932 5.932 12 Si 0.983 3.017 13 H -0.262 1.262 14 H -0.288 1.288 15 H -0.261 1.261 16 C -0.059 4.059 17 C -0.082 4.082 18 C -0.108 4.108 19 C 0.015 3.985 20 C 0.014 3.986 21 C -0.095 4.095 22 O -0.323 6.323 23 C 0.204 3.796 24 O -0.326 6.326 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.409 0.591 29 H -0.015 1.015 30 H -0.012 1.012 31 H 0.268 0.732 32 H 0.132 0.868 33 H 0.148 0.852 34 H 0.155 0.845 35 H 0.108 0.892 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.115 6.195 21.153 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.078 4.078 3 H 0.151 0.849 4 C 0.286 3.714 5 O -0.475 6.475 6 N -0.354 5.354 7 C 0.144 3.856 8 C -0.593 4.593 9 H 0.104 0.896 10 C -0.196 4.196 11 N -0.571 5.571 12 Si 0.806 3.194 13 H -0.187 1.187 14 H -0.213 1.213 15 H -0.185 1.185 16 C -0.060 4.060 17 C -0.100 4.100 18 C -0.126 4.126 19 C -0.029 4.029 20 C -0.030 4.030 21 C -0.114 4.114 22 O -0.240 6.240 23 C 0.094 3.906 24 O -0.243 6.243 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.097 0.903 28 H 0.245 0.755 29 H 0.003 0.997 30 H 0.006 0.994 31 H 0.077 0.923 32 H 0.149 0.851 33 H 0.166 0.834 34 H 0.172 0.828 35 H 0.125 0.875 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.349 5.357 21.216 22.310 hybrid contribution 0.146 0.041 -0.838 0.851 sum -4.203 5.398 20.378 21.496 Atomic orbital electron populations 1.21828 0.89598 1.03286 1.04676 1.20284 0.99488 1.00590 0.87431 0.84928 1.21260 0.79967 0.84532 0.85651 1.90671 1.40416 1.28922 1.87473 1.46150 1.52152 1.31658 1.05424 1.18515 0.92749 0.91742 0.82567 1.21609 1.33232 1.13724 0.90734 0.89650 1.26059 0.94777 0.95605 1.03180 1.70135 1.37266 1.24442 1.25232 0.85231 0.79062 0.78475 0.76603 1.18663 1.21331 1.18518 1.19188 0.97874 0.94288 0.94675 1.20829 0.99746 0.94123 0.95349 1.20217 0.97675 1.01455 0.93275 1.19951 0.99364 0.92947 0.90677 1.19827 0.96598 0.92935 0.93661 1.20082 0.98138 1.01456 0.91698 1.87310 1.62450 1.50223 1.24046 1.26129 1.04714 0.71907 0.87876 1.87307 1.75232 1.32149 1.29567 0.92629 0.88689 0.90265 0.75499 0.99746 0.99411 0.92328 0.85055 0.83410 0.82754 0.87476 0.82313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.90 71.98 0.64 -1.99 16 2 C -0.06 -1.44 2.90 -12.29 -0.04 -1.48 16 3 H 0.13 2.60 7.87 -2.39 -0.02 2.59 16 4 C 0.50 19.15 7.02 87.66 0.62 19.76 16 5 O -0.59 -28.76 15.10 -3.05 -0.05 -28.81 16 6 N -0.70 -28.57 5.44 -466.78 -2.54 -31.11 16 7 C 0.27 14.45 5.43 85.63 0.46 14.92 16 8 C -0.56 -29.70 9.28 25.60 0.24 -29.46 16 9 H 0.09 4.07 7.60 -2.91 -0.02 4.05 16 10 C 0.00 0.18 5.46 84.66 0.46 0.64 16 11 N -0.93 -56.15 13.29 21.45 0.28 -55.86 16 12 Si 0.98 41.82 29.54 68.60 2.03 43.84 16 13 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 14 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 16 C -0.06 -1.62 4.40 -19.86 -0.09 -1.71 16 17 C -0.08 -2.35 7.92 22.27 0.18 -2.17 16 18 C -0.11 -2.91 10.06 22.34 0.22 -2.68 16 19 C 0.01 0.41 7.15 22.59 0.16 0.57 16 20 C 0.01 0.38 7.15 22.59 0.16 0.54 16 21 C -0.10 -2.44 9.68 22.34 0.22 -2.22 16 22 O -0.32 -7.80 11.40 -76.11 -0.87 -8.67 16 23 C 0.20 3.42 8.89 113.37 1.01 4.43 16 24 O -0.33 -8.01 11.40 -76.07 -0.87 -8.88 16 25 H 0.05 1.18 7.38 -2.39 -0.02 1.16 16 26 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.08 1.38 7.56 -2.39 -0.02 1.36 16 28 H 0.41 13.39 7.74 -92.71 -0.72 12.67 16 29 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 30 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 31 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 32 H 0.13 3.80 7.50 -2.91 -0.02 3.78 16 33 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 34 H 0.15 3.16 7.94 -2.91 -0.02 3.14 16 35 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.16 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -75.31 312.40 2.63 -72.68 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.39 Total: 17.65 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 4.25 Total: -0.85 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -2.25 Total: -86.97 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -1.78 Total: -46.36 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -75.31 2.63 -72.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351603048.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.174 kcal (2) G-P(sol) polarization free energy of solvation -75.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds