Wall clock time and date at job start Mon Mar 30 2020 02:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46507 * 120.00030 * 2 1 4 4 H 1.09002 * 109.52358 * 179.97438 * 3 2 1 5 5 C 1.53181 * 109.52398 * 59.87145 * 3 2 1 6 6 C 1.53169 * 109.03929 * 183.05116 * 5 3 2 7 7 C 1.53101 * 109.16257 * 56.97887 * 6 5 3 8 8 O 1.42903 * 109.41341 * 302.39403 * 7 6 5 9 9 C 1.42900 * 114.09799 * 61.16062 * 8 7 6 10 10 S 1.65601 * 120.00279 * 179.97438 * 2 1 3 11 11 O 1.42099 * 104.27297 * 26.07504 * 10 2 1 12 12 O 1.42098 * 104.27873 * 153.92931 * 10 2 1 13 13 C 1.81400 * 104.45058 * 270.00253 * 10 2 1 14 14 C 1.52996 * 109.47306 * 179.97438 * 13 10 2 15 15 C 1.50694 * 109.47597 * 179.97438 * 14 13 10 16 16 H 1.08008 * 119.99530 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00580 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00369 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99413 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47270 * 90.00518 * 19 17 15 21 21 H 1.48509 * 109.46855 * 209.99872 * 19 17 15 22 22 H 1.48498 * 109.47520 * 329.99852 * 19 17 15 23 23 H 1.09000 * 109.47302 * 90.00101 * 1 2 3 24 24 H 1.08996 * 109.47350 * 210.00019 * 1 2 3 25 25 H 1.09004 * 109.47565 * 330.00415 * 1 2 3 26 26 H 1.09003 * 109.54262 * 302.92411 * 5 3 2 27 27 H 1.09002 * 109.54034 * 63.09641 * 5 3 2 28 28 H 1.08995 * 109.52819 * 176.88447 * 6 5 3 29 29 H 1.09005 * 109.52456 * 297.01768 * 6 5 3 30 30 H 1.09000 * 109.47517 * 62.37679 * 7 6 5 31 31 H 1.08997 * 109.47763 * 182.39886 * 7 6 5 32 32 H 1.09000 * 109.48323 * 178.85848 * 9 8 7 33 33 H 1.08998 * 109.48675 * 58.81697 * 9 8 7 34 34 H 1.09002 * 109.47008 * 299.99987 * 13 10 2 35 35 H 1.08999 * 109.47071 * 59.99748 * 13 10 2 36 36 H 1.08997 * 109.47184 * 300.00562 * 14 13 10 37 37 H 1.09004 * 109.46385 * 60.00062 * 14 13 10 38 38 H 0.96996 * 120.00047 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 1 3.2693 1.0706 0.0005 5 6 1.8259 2.0745 1.2487 6 6 2.5383 3.4295 1.1994 7 6 2.1541 4.1525 -0.0943 8 8 2.4986 3.3358 -1.2152 9 6 1.8263 2.0753 -1.2473 10 16 2.2930 -1.4341 0.0006 11 8 1.3970 -2.3563 -0.6043 12 8 3.5395 -1.1193 -0.6047 13 6 2.5193 -1.8254 1.7574 14 6 3.2808 -3.1455 1.8920 15 6 3.4694 -3.4703 3.3514 16 1 3.0841 -2.8021 4.1074 17 6 4.1337 -4.6204 3.7215 18 7 4.2978 -4.9040 4.9951 19 14 4.8006 -5.7756 2.4138 20 1 6.1898 -5.3816 2.0671 21 1 4.7957 -7.1668 2.9334 22 1 3.9465 -5.6970 1.2016 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 0.7473 2.2302 1.2745 27 1 2.1370 1.5297 2.1400 28 1 2.2363 4.0313 2.0565 29 1 3.6171 3.2750 1.2247 30 1 1.0808 4.3428 -0.0993 31 1 2.6914 5.0989 -0.1550 32 1 2.1276 1.5251 -2.1387 33 1 0.7488 2.2383 -1.2673 34 1 3.0866 -1.0277 2.2372 35 1 1.5451 -1.9178 2.2375 36 1 2.7133 -3.9429 1.4123 37 1 4.2551 -3.0534 1.4118 38 1 4.7648 -5.7133 5.2555 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352296859.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:00 Heat of formation + Delta-G solvation = -124.443712 kcal Electronic energy + Delta-G solvation = -20642.994380 eV Core-core repulsion = 17419.590611 eV Total energy + Delta-G solvation = -3223.403769 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.74623 -36.81471 -36.30757 -35.57971 -33.97573 -33.03922 -31.50508 -30.18230 -26.54969 -25.98113 -25.21630 -23.20319 -21.23851 -20.21402 -18.73548 -17.77754 -17.01384 -16.82054 -16.22349 -15.80428 -15.55283 -14.97238 -14.74340 -14.45121 -14.17445 -13.68699 -13.42923 -13.34139 -12.87525 -12.81340 -12.59388 -11.93575 -11.91548 -11.84431 -11.75034 -11.44858 -11.31997 -11.27119 -11.21970 -10.99876 -10.70105 -10.46439 -10.16653 -9.91135 -9.71733 -9.43068 -8.85209 -8.68202 -6.18563 -4.20011 0.57566 2.78997 3.25374 3.32758 3.36906 3.69962 4.13494 4.34238 4.38789 4.41081 4.60939 4.65807 4.73530 4.90776 4.98108 5.13015 5.15223 5.29344 5.39140 5.41812 5.48327 5.49768 5.55585 5.57646 5.68511 5.75251 5.80075 5.93261 6.12732 6.25606 6.48716 6.78909 6.91299 6.98763 7.52553 8.34364 8.82183 9.41138 10.93834 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027827 B = 0.004864 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.977491 B = 5754.731881 C = 6137.020867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -1.001 6.001 3 C 0.114 3.886 4 H 0.111 0.889 5 C -0.137 4.137 6 C -0.155 4.155 7 C 0.057 3.943 8 O -0.378 6.378 9 C 0.058 3.942 10 S 2.585 3.415 11 O -0.961 6.961 12 O -0.961 6.961 13 C -0.582 4.582 14 C -0.007 4.007 15 C -0.520 4.520 16 H 0.077 0.923 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.869 3.131 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.262 1.262 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.032 0.968 37 H 0.028 0.972 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.764 16.842 -8.871 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.838 5.838 3 C 0.007 3.993 4 H 0.129 0.871 5 C -0.176 4.176 6 C -0.194 4.194 7 C -0.020 4.020 8 O -0.295 6.295 9 C -0.020 4.020 10 S 2.684 3.316 11 O -0.951 6.951 12 O -0.952 6.952 13 C -0.715 4.715 14 C -0.046 4.046 15 C -0.559 4.559 16 H 0.096 0.904 17 C -0.130 4.130 18 N -0.533 5.533 19 Si 0.695 3.305 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.186 1.186 23 H 0.075 0.925 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.321 16.320 -9.712 20.353 hybrid contribution 0.022 -0.585 0.503 0.772 sum -7.299 15.735 -9.209 19.639 Atomic orbital electron populations 1.21432 0.78800 1.03026 1.02107 1.57686 1.14969 1.20851 1.90301 1.21532 0.98065 0.83920 0.95761 0.87082 1.22047 1.01192 0.95949 0.98460 1.22211 1.02088 0.96463 0.98590 1.22633 0.99732 0.93957 0.85670 1.87982 1.68002 1.28288 1.45275 1.22872 0.96616 0.84200 0.98329 1.05872 0.73742 0.72675 0.79295 1.93550 1.64723 1.61850 1.74993 1.93547 1.43853 1.82737 1.75024 1.30333 1.10419 1.09593 1.21116 1.19412 0.94902 0.89290 1.01032 1.20837 1.37626 1.08144 0.89266 0.90445 1.24978 0.95227 0.97480 0.95361 1.69875 1.41994 1.26151 1.15321 0.86931 0.80337 0.80628 0.82595 1.19623 1.20709 1.18628 0.92547 0.90685 0.91183 0.91050 0.90369 0.90404 0.90458 0.93201 0.88743 0.88337 0.92695 0.85739 0.85680 0.94958 0.95391 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 9.21 59.84 0.55 1.47 16 2 N -1.00 -12.68 3.01 -114.46 -0.34 -13.03 16 3 C 0.11 1.33 2.66 -67.78 -0.18 1.15 16 4 H 0.11 1.47 6.88 -51.93 -0.36 1.12 16 5 C -0.14 -1.29 5.34 -26.55 -0.14 -1.43 16 6 C -0.16 -1.28 6.14 -26.59 -0.16 -1.44 16 7 C 0.06 0.47 6.84 37.21 0.25 0.72 16 8 O -0.38 -4.30 10.77 -35.23 -0.38 -4.68 16 9 C 0.06 0.64 6.17 37.21 0.23 0.87 16 10 S 2.59 43.94 5.37 -107.50 -0.58 43.36 16 11 O -0.96 -18.65 17.09 -57.54 -0.98 -19.63 16 12 O -0.96 -18.74 16.57 -57.54 -0.95 -19.70 16 13 C -0.58 -10.55 6.12 37.16 0.23 -10.32 16 14 C -0.01 -0.17 4.05 -27.89 -0.11 -0.28 16 15 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 16 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 17 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 19 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.75 7.79 -51.93 -0.40 0.34 16 25 H 0.07 0.52 6.38 -51.93 -0.33 0.19 16 26 H 0.07 0.57 6.56 -51.93 -0.34 0.23 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.50 7.60 -51.93 -0.39 0.11 16 34 H 0.12 2.06 8.14 -51.92 -0.42 1.63 16 35 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 36 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 37 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 316.17 15.07 4.76 4.76 Total: -1.00 -34.15 316.17 -8.12 -42.27 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.99 Total: -1.87 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 0.23 Total: -22.07 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.43 Total: -39.23 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -2.32 Total: -44.01 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Atomic # 16 Polarization: 43.94 SS G_CDS: -0.58 Total: 43.36 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.15 -8.12 -42.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352296859.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.177 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds