Wall clock time and date at job start Mon Mar 30 2020 02:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46507 * 120.00030 * 2 1 4 4 H 1.09002 * 109.52358 * 179.97438 * 3 2 1 5 5 C 1.53181 * 109.52398 * 59.87145 * 3 2 1 6 6 C 1.53169 * 109.03929 * 183.05116 * 5 3 2 7 7 C 1.53101 * 109.16257 * 56.97887 * 6 5 3 8 8 O 1.42903 * 109.41341 * 302.39403 * 7 6 5 9 9 C 1.42900 * 114.09799 * 61.16062 * 8 7 6 10 10 S 1.65601 * 120.00279 * 179.97438 * 2 1 3 11 11 O 1.42099 * 104.27297 * 26.07504 * 10 2 1 12 12 O 1.42098 * 104.27873 * 153.92931 * 10 2 1 13 13 C 1.81400 * 104.45058 * 270.00253 * 10 2 1 14 14 C 1.52996 * 109.47306 * 179.97438 * 13 10 2 15 15 C 1.50694 * 109.47597 * 179.97438 * 14 13 10 16 16 H 1.08008 * 119.99530 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00580 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00369 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99413 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47270 * 90.00518 * 19 17 15 21 21 H 1.48509 * 109.46855 * 209.99872 * 19 17 15 22 22 H 1.48498 * 109.47520 * 329.99852 * 19 17 15 23 23 H 1.09000 * 109.47302 * 90.00101 * 1 2 3 24 24 H 1.08996 * 109.47350 * 210.00019 * 1 2 3 25 25 H 1.09004 * 109.47565 * 330.00415 * 1 2 3 26 26 H 1.09003 * 109.54262 * 302.92411 * 5 3 2 27 27 H 1.09002 * 109.54034 * 63.09641 * 5 3 2 28 28 H 1.08995 * 109.52819 * 176.88447 * 6 5 3 29 29 H 1.09005 * 109.52456 * 297.01768 * 6 5 3 30 30 H 1.09000 * 109.47517 * 62.37679 * 7 6 5 31 31 H 1.08997 * 109.47763 * 182.39886 * 7 6 5 32 32 H 1.09000 * 109.48323 * 178.85848 * 9 8 7 33 33 H 1.08998 * 109.48675 * 58.81697 * 9 8 7 34 34 H 1.09002 * 109.47008 * 299.99987 * 13 10 2 35 35 H 1.08999 * 109.47071 * 59.99748 * 13 10 2 36 36 H 1.08997 * 109.47184 * 300.00562 * 14 13 10 37 37 H 1.09004 * 109.46385 * 60.00062 * 14 13 10 38 38 H 0.96996 * 120.00047 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 1 3.2693 1.0706 0.0005 5 6 1.8259 2.0745 1.2487 6 6 2.5383 3.4295 1.1994 7 6 2.1541 4.1525 -0.0943 8 8 2.4986 3.3358 -1.2152 9 6 1.8263 2.0753 -1.2473 10 16 2.2930 -1.4341 0.0006 11 8 1.3970 -2.3563 -0.6043 12 8 3.5395 -1.1193 -0.6047 13 6 2.5193 -1.8254 1.7574 14 6 3.2808 -3.1455 1.8920 15 6 3.4694 -3.4703 3.3514 16 1 3.0841 -2.8021 4.1074 17 6 4.1337 -4.6204 3.7215 18 7 4.2978 -4.9040 4.9951 19 14 4.8006 -5.7756 2.4138 20 1 6.1898 -5.3816 2.0671 21 1 4.7957 -7.1668 2.9334 22 1 3.9465 -5.6970 1.2016 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 0.7473 2.2302 1.2745 27 1 2.1370 1.5297 2.1400 28 1 2.2363 4.0313 2.0565 29 1 3.6171 3.2750 1.2247 30 1 1.0808 4.3428 -0.0993 31 1 2.6914 5.0989 -0.1550 32 1 2.1276 1.5251 -2.1387 33 1 0.7488 2.2383 -1.2673 34 1 3.0866 -1.0277 2.2372 35 1 1.5451 -1.9178 2.2375 36 1 2.7133 -3.9429 1.4123 37 1 4.2551 -3.0534 1.4118 38 1 4.7648 -5.7133 5.2555 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352296859.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:00 Heat of formation + Delta-G solvation = -150.264473 kcal Electronic energy + Delta-G solvation = -20644.114052 eV Core-core repulsion = 17419.590611 eV Total energy + Delta-G solvation = -3224.523441 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.54092 -38.26877 -37.28039 -36.98387 -35.91640 -33.78784 -33.48761 -30.98799 -27.95803 -27.32369 -25.98799 -24.05187 -23.05781 -21.03348 -19.98990 -19.39267 -18.60744 -17.76602 -17.30346 -16.86469 -16.76567 -16.41970 -15.99621 -15.60278 -15.24923 -15.11244 -14.83432 -14.26908 -14.20807 -13.83162 -13.64232 -13.54625 -13.26350 -13.13138 -13.09363 -12.98006 -12.69046 -12.49468 -12.25990 -12.08000 -11.97642 -11.83052 -11.68864 -11.44172 -11.22105 -10.85995 -10.66995 -9.84710 -8.38180 -6.43991 -0.79238 1.30798 1.32687 1.42627 1.60713 2.28146 2.76164 2.94373 2.95906 3.13082 3.52418 3.82514 3.83836 3.94909 3.97167 4.08330 4.15078 4.22038 4.49005 4.53674 4.64746 4.66093 4.70263 4.77211 4.89382 4.96235 4.98045 5.03908 5.07745 5.11985 5.20670 5.38925 5.45465 5.56125 6.14980 6.25681 6.61832 7.20633 8.77398 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027827 B = 0.004864 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.977491 B = 5754.731881 C = 6137.020867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.990 5.990 3 C 0.108 3.892 4 H 0.089 0.911 5 C -0.136 4.136 6 C -0.153 4.153 7 C 0.051 3.949 8 O -0.399 6.399 9 C 0.060 3.940 10 S 2.612 3.388 11 O -0.984 6.984 12 O -0.989 6.989 13 C -0.586 4.586 14 C -0.017 4.017 15 C -0.527 4.527 16 H 0.050 0.950 17 C 0.015 3.985 18 N -0.939 5.939 19 Si 0.923 3.077 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.250 1.250 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.032 0.968 37 H 0.029 0.971 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.950 18.223 -9.898 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.830 5.830 3 C 0.001 3.999 4 H 0.107 0.893 5 C -0.175 4.175 6 C -0.192 4.192 7 C -0.025 4.025 8 O -0.317 6.317 9 C -0.019 4.019 10 S 2.709 3.291 11 O -0.974 6.974 12 O -0.979 6.979 13 C -0.718 4.718 14 C -0.056 4.056 15 C -0.566 4.566 16 H 0.068 0.932 17 C -0.183 4.183 18 N -0.579 5.579 19 Si 0.746 3.254 20 H -0.186 1.186 21 H -0.198 1.198 22 H -0.174 1.174 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.121 0.879 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.508 17.699 -10.731 22.378 hybrid contribution 0.333 -0.873 0.862 1.271 sum -8.175 16.826 -9.869 21.150 Atomic orbital electron populations 1.21775 0.76648 1.04732 1.03354 1.57306 1.16124 1.19630 1.89895 1.21680 0.96885 0.83566 0.97729 0.89311 1.22074 1.02679 0.96004 0.96761 1.22222 1.01218 0.96147 0.99597 1.22861 1.01171 0.93899 0.84562 1.87959 1.68630 1.28463 1.46692 1.22834 0.97847 0.84038 0.97159 1.04834 0.73064 0.73165 0.78031 1.93514 1.65184 1.63617 1.75112 1.93509 1.45732 1.83416 1.75250 1.30324 1.10737 1.07221 1.23480 1.19370 0.95849 0.92243 0.98147 1.21158 1.36811 1.07560 0.91093 0.93189 1.25847 0.95746 0.99367 0.97370 1.69998 1.43426 1.27127 1.17344 0.86050 0.80212 0.78820 0.80314 1.18577 1.19750 1.17387 0.91614 0.90632 0.87907 0.88862 0.90863 0.88224 0.91797 0.91313 0.87404 0.89654 0.90365 0.84540 0.84086 0.94966 0.95308 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 9.21 127.77 1.18 2.52 16 2 N -0.99 -23.21 3.01 -516.03 -1.55 -24.77 16 3 C 0.11 2.34 2.66 45.08 0.12 2.46 16 4 H 0.09 2.33 6.88 -2.39 -0.02 2.32 16 5 C -0.14 -2.20 5.34 30.71 0.16 -2.03 16 6 C -0.15 -2.14 6.14 30.68 0.19 -1.96 16 7 C 0.05 0.70 6.84 72.02 0.49 1.19 16 8 O -0.40 -8.36 10.77 -148.98 -1.60 -9.96 16 9 C 0.06 1.19 6.17 72.01 0.44 1.63 16 10 S 2.61 86.38 5.37 -56.49 -0.30 86.08 16 11 O -0.98 -37.12 17.09 -127.65 -2.18 -39.30 16 12 O -0.99 -38.31 16.57 -127.65 -2.12 -40.43 16 13 C -0.59 -20.89 6.12 71.98 0.44 -20.45 16 14 C -0.02 -0.80 4.05 29.84 0.12 -0.68 16 15 C -0.53 -29.76 9.66 25.60 0.25 -29.51 16 16 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 17 C 0.02 0.89 5.47 84.66 0.46 1.36 16 18 N -0.94 -57.64 13.96 21.45 0.30 -57.34 16 19 Si 0.92 43.91 27.47 68.60 1.88 45.79 16 20 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.25 -11.33 6.54 99.48 0.65 -10.67 16 23 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 1.31 7.79 -2.39 -0.02 1.29 16 25 H 0.10 1.09 6.38 -2.39 -0.02 1.07 16 26 H 0.09 1.10 6.56 -2.39 -0.02 1.08 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 1.17 7.60 -2.39 -0.02 1.15 16 34 H 0.14 4.45 8.14 -2.39 -0.02 4.44 16 35 H 0.14 4.48 8.14 -2.39 -0.02 4.47 16 36 H 0.03 1.50 7.20 -2.39 -0.02 1.49 16 37 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 38 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -74.08 316.17 -0.74 -74.82 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.98 Total: 10.56 kcal Atomic # 6 Polarization: -49.32 SS G_CDS: 3.86 Total: -45.47 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -1.25 Total: -82.10 kcal Atomic # 8 Polarization: -83.78 SS G_CDS: -5.90 Total: -89.68 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Atomic # 16 Polarization: 86.38 SS G_CDS: -0.30 Total: 86.08 kcal Total: -74.08 -0.74 -74.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352296859.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.444 kcal (2) G-P(sol) polarization free energy of solvation -74.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds