Wall clock time and date at job start Mon Mar 30 2020 02:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 120.00211 * 2 1 4 4 H 1.09004 * 110.43776 * 179.30301 * 3 2 1 5 5 C 1.54268 * 110.48472 * 56.75945 * 3 2 1 6 6 C 1.53878 * 106.60006 * 217.70868 * 5 3 2 7 7 C 1.54267 * 106.59783 * 0.02562 * 6 5 3 8 8 C 1.54889 * 110.48664 * 301.84351 * 3 2 1 9 9 H 1.08997 * 110.75860 * 38.30421 * 8 3 2 10 10 O 1.42898 * 110.75603 * 274.93431 * 8 3 2 11 11 S 1.65606 * 119.99829 * 180.02562 * 2 1 3 12 12 O 1.42094 * 104.27817 * 333.92669 * 11 2 1 13 13 O 1.42106 * 104.27580 * 206.06900 * 11 2 1 14 14 C 1.81396 * 104.45103 * 89.99885 * 11 2 1 15 15 C 1.52997 * 109.47360 * 179.97438 * 14 11 2 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 11 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99594 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99875 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47061 * 90.00257 * 20 18 16 22 22 H 1.48497 * 109.46906 * 209.99430 * 20 18 16 23 23 H 1.48498 * 109.47403 * 329.99876 * 20 18 16 24 24 H 1.09002 * 109.47071 * 270.00001 * 1 2 3 25 25 H 1.09000 * 109.47151 * 29.99887 * 1 2 3 26 26 H 1.09001 * 109.47313 * 149.99807 * 1 2 3 27 27 H 1.08993 * 110.03226 * 336.99833 * 5 3 2 28 28 H 1.09004 * 110.03010 * 98.43103 * 5 3 2 29 29 H 1.09003 * 110.02602 * 119.28257 * 6 5 3 30 30 H 1.08996 * 110.03505 * 240.66962 * 6 5 3 31 31 H 1.08999 * 110.48698 * 142.28311 * 7 6 5 32 32 H 1.08997 * 110.48693 * 264.80073 * 7 6 5 33 33 H 0.96703 * 113.99911 * 180.02562 * 10 8 3 34 34 H 1.09002 * 109.47134 * 59.99751 * 14 11 2 35 35 H 1.08998 * 109.46953 * 300.00489 * 14 11 2 36 36 H 1.09002 * 109.47153 * 59.99820 * 15 14 11 37 37 H 1.09001 * 109.46832 * 300.00011 * 15 14 11 38 38 H 0.97002 * 119.99739 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2723 1.0876 0.0124 5 6 1.7814 2.1323 1.2087 6 6 1.7499 3.5901 0.7172 7 6 2.1472 3.5615 -0.7731 8 6 1.8056 2.1209 -1.2325 9 1 0.7406 2.0268 -1.4445 10 8 2.5847 1.7514 -2.3721 11 16 2.2930 -1.4342 -0.0006 12 8 1.3970 -2.3564 0.6042 13 8 3.5395 -1.1195 0.6047 14 6 2.5193 -1.8255 -1.7574 15 6 3.2818 -3.1450 -1.8919 16 6 3.4693 -3.4704 -3.3514 17 1 3.0835 -2.8026 -4.1074 18 6 4.1342 -4.6201 -3.7215 19 7 4.2982 -4.9037 -4.9952 20 14 4.8021 -5.7748 -2.4139 21 1 3.7671 -6.7818 -2.0674 22 1 6.0099 -6.4652 -2.9333 23 1 5.1602 -4.9956 -1.2015 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 0.7928 1.8344 1.5577 28 1 2.5098 2.0250 2.0125 29 1 0.7457 3.9997 0.8278 30 1 2.4621 4.1905 1.2831 31 1 1.5657 4.2908 -1.3371 32 1 3.2138 3.7547 -0.8874 33 1 2.3778 2.2564 -3.1705 34 1 3.0865 -1.0279 -2.2371 35 1 1.5451 -1.9178 -2.2375 36 1 2.7149 -3.9429 -1.4121 37 1 4.2561 -3.0522 -1.4119 38 1 4.7657 -5.7128 -5.2556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352617084.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:52 Heat of formation + Delta-G solvation = -129.659792 kcal Electronic energy + Delta-G solvation = -20776.477453 eV Core-core repulsion = 17552.847498 eV Total energy + Delta-G solvation = -3223.629955 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.33103 -36.70617 -35.81082 -35.46739 -34.30124 -33.86542 -31.40607 -28.42540 -27.74897 -26.01408 -25.54788 -21.24806 -20.89078 -20.30481 -18.75128 -17.99031 -17.20450 -16.80804 -16.46456 -15.52250 -15.13332 -15.00279 -14.36965 -14.10520 -13.86334 -13.59109 -13.47926 -12.80788 -12.71810 -12.58943 -12.52495 -12.07357 -11.83556 -11.67061 -11.56181 -11.41974 -11.27752 -11.18157 -11.10681 -10.90906 -10.62766 -10.37554 -10.08551 -10.03523 -9.65428 -9.35387 -8.79268 -8.61308 -6.11620 -4.11945 0.71297 2.92196 3.30008 3.37093 3.42187 3.92896 4.22003 4.34512 4.40446 4.42231 4.61897 4.72287 4.87457 5.05502 5.17187 5.20396 5.22866 5.31537 5.35717 5.48543 5.56552 5.62645 5.66357 5.72933 5.75376 5.77951 5.91895 6.01955 6.23202 6.40416 6.63776 6.91187 7.01488 7.57139 7.60737 8.42969 8.90612 9.48485 11.00952 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026859 B = 0.005317 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.245126 B = 5265.059347 C = 5779.060294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.999 5.999 3 C 0.151 3.849 4 H 0.116 0.884 5 C -0.132 4.132 6 C -0.119 4.119 7 C -0.157 4.157 8 C 0.082 3.918 9 H 0.071 0.929 10 O -0.555 6.555 11 S 2.586 3.414 12 O -0.966 6.966 13 O -0.965 6.965 14 C -0.578 4.578 15 C -0.007 4.007 16 C -0.515 4.515 17 H 0.078 0.922 18 C 0.071 3.929 19 N -0.897 5.897 20 Si 0.869 3.131 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.262 1.262 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.379 0.621 34 H 0.133 0.867 35 H 0.122 0.878 36 H 0.026 0.974 37 H 0.031 0.969 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.156 18.079 9.356 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.834 5.834 3 C 0.044 3.956 4 H 0.134 0.866 5 C -0.172 4.172 6 C -0.157 4.157 7 C -0.195 4.195 8 C 0.021 3.979 9 H 0.089 0.911 10 O -0.360 6.360 11 S 2.686 3.314 12 O -0.956 6.956 13 O -0.955 6.955 14 C -0.711 4.711 15 C -0.046 4.046 16 C -0.554 4.554 17 H 0.096 0.904 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.695 3.305 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.186 1.186 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.227 0.773 34 H 0.151 0.849 35 H 0.140 0.860 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.587 17.055 10.491 21.412 hybrid contribution -0.073 -0.021 -0.578 0.583 sum -7.660 17.034 9.914 21.145 Atomic orbital electron populations 1.21396 0.79046 1.02838 1.01934 1.57642 1.14706 1.21016 1.90027 1.21660 0.97951 0.83023 0.92934 0.86603 1.22423 1.02941 0.94152 0.97652 1.21998 1.01745 0.96488 0.95511 1.23026 1.02710 0.97173 0.96624 1.23262 0.94861 0.93051 0.86681 0.91110 1.86575 1.63956 1.64777 1.20711 1.05799 0.73644 0.72617 0.79370 1.93535 1.64833 1.61972 1.75283 1.93528 1.43898 1.82795 1.75275 1.30277 1.10389 1.09604 1.20830 1.19412 0.95028 0.89246 1.00956 1.20859 1.37233 1.07991 0.89346 0.90382 1.24980 0.95298 0.97516 0.95327 1.69885 1.42268 1.26107 1.15282 0.86935 0.79265 0.81623 0.82695 1.19705 1.20768 1.18638 0.92573 0.91355 0.90773 0.90539 0.90527 0.91554 0.91270 0.91254 0.90257 0.77322 0.84908 0.85968 0.95600 0.95047 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.01 8.99 59.85 0.54 1.55 16 2 N -1.00 -13.75 3.10 -112.84 -0.35 -14.10 16 3 C 0.15 1.87 2.92 -66.27 -0.19 1.68 16 4 H 0.12 1.66 6.94 -51.93 -0.36 1.30 16 5 C -0.13 -1.28 6.43 -25.61 -0.16 -1.45 16 6 C -0.12 -0.89 6.81 -25.61 -0.17 -1.07 16 7 C -0.16 -1.23 6.56 -25.00 -0.16 -1.40 16 8 C 0.08 0.83 3.81 -24.67 -0.09 0.73 16 9 H 0.07 0.62 6.25 -51.93 -0.32 0.30 16 10 O -0.55 -6.45 13.45 -35.23 -0.47 -6.92 16 11 S 2.59 47.29 5.37 -107.50 -0.58 46.71 16 12 O -0.97 -19.68 17.09 -57.54 -0.98 -20.66 16 13 O -0.96 -19.98 16.59 -57.54 -0.95 -20.94 16 14 C -0.58 -11.40 6.12 37.16 0.23 -11.17 16 15 C -0.01 -0.17 4.05 -27.88 -0.11 -0.29 16 16 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 17 H 0.08 2.36 7.99 -52.49 -0.42 1.94 16 18 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 19 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 20 Si 0.87 21.96 27.47 -169.99 -4.67 17.29 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 24 H 0.06 0.56 7.88 -51.93 -0.41 0.15 16 25 H 0.07 0.55 6.24 -51.93 -0.32 0.23 16 26 H 0.07 0.81 7.79 -51.93 -0.40 0.40 16 27 H 0.08 0.69 6.84 -51.93 -0.36 0.33 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.38 2.78 9.12 45.56 0.42 3.19 16 34 H 0.13 2.54 8.14 -51.92 -0.42 2.12 16 35 H 0.12 2.20 8.14 -51.93 -0.42 1.77 16 36 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 37 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 38 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 317.72 15.07 4.79 4.79 Total: -1.00 -35.71 317.72 -8.09 -43.80 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -5.07 Total: 1.36 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -0.57 Total: -24.56 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.42 Total: -40.88 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -2.41 Total: -48.52 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Atomic # 16 Polarization: 47.29 SS G_CDS: -0.58 Total: 46.71 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.71 -8.09 -43.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352617084.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.858 kcal (2) G-P(sol) polarization free energy of solvation -35.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds