Wall clock time and date at job start Mon Mar 30 2020 02:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 120.00211 * 2 1 4 4 H 1.09004 * 110.43776 * 179.30301 * 3 2 1 5 5 C 1.54268 * 110.48472 * 56.75945 * 3 2 1 6 6 C 1.53878 * 106.60006 * 217.70868 * 5 3 2 7 7 C 1.54267 * 106.59783 * 0.02562 * 6 5 3 8 8 C 1.54889 * 110.48664 * 301.84351 * 3 2 1 9 9 H 1.08997 * 110.75860 * 38.30421 * 8 3 2 10 10 O 1.42898 * 110.75603 * 274.93431 * 8 3 2 11 11 S 1.65606 * 119.99829 * 180.02562 * 2 1 3 12 12 O 1.42094 * 104.27817 * 333.92669 * 11 2 1 13 13 O 1.42106 * 104.27580 * 206.06900 * 11 2 1 14 14 C 1.81396 * 104.45103 * 89.99885 * 11 2 1 15 15 C 1.52997 * 109.47360 * 179.97438 * 14 11 2 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 11 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99594 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99875 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47061 * 90.00257 * 20 18 16 22 22 H 1.48497 * 109.46906 * 209.99430 * 20 18 16 23 23 H 1.48498 * 109.47403 * 329.99876 * 20 18 16 24 24 H 1.09002 * 109.47071 * 270.00001 * 1 2 3 25 25 H 1.09000 * 109.47151 * 29.99887 * 1 2 3 26 26 H 1.09001 * 109.47313 * 149.99807 * 1 2 3 27 27 H 1.08993 * 110.03226 * 336.99833 * 5 3 2 28 28 H 1.09004 * 110.03010 * 98.43103 * 5 3 2 29 29 H 1.09003 * 110.02602 * 119.28257 * 6 5 3 30 30 H 1.08996 * 110.03505 * 240.66962 * 6 5 3 31 31 H 1.08999 * 110.48698 * 142.28311 * 7 6 5 32 32 H 1.08997 * 110.48693 * 264.80073 * 7 6 5 33 33 H 0.96703 * 113.99911 * 180.02562 * 10 8 3 34 34 H 1.09002 * 109.47134 * 59.99751 * 14 11 2 35 35 H 1.08998 * 109.46953 * 300.00489 * 14 11 2 36 36 H 1.09002 * 109.47153 * 59.99820 * 15 14 11 37 37 H 1.09001 * 109.46832 * 300.00011 * 15 14 11 38 38 H 0.97002 * 119.99739 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2723 1.0876 0.0124 5 6 1.7814 2.1323 1.2087 6 6 1.7499 3.5901 0.7172 7 6 2.1472 3.5615 -0.7731 8 6 1.8056 2.1209 -1.2325 9 1 0.7406 2.0268 -1.4445 10 8 2.5847 1.7514 -2.3721 11 16 2.2930 -1.4342 -0.0006 12 8 1.3970 -2.3564 0.6042 13 8 3.5395 -1.1195 0.6047 14 6 2.5193 -1.8255 -1.7574 15 6 3.2818 -3.1450 -1.8919 16 6 3.4693 -3.4704 -3.3514 17 1 3.0835 -2.8026 -4.1074 18 6 4.1342 -4.6201 -3.7215 19 7 4.2982 -4.9037 -4.9952 20 14 4.8021 -5.7748 -2.4139 21 1 3.7671 -6.7818 -2.0674 22 1 6.0099 -6.4652 -2.9333 23 1 5.1602 -4.9956 -1.2015 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 0.7928 1.8344 1.5577 28 1 2.5098 2.0250 2.0125 29 1 0.7457 3.9997 0.8278 30 1 2.4621 4.1905 1.2831 31 1 1.5657 4.2908 -1.3371 32 1 3.2138 3.7547 -0.8874 33 1 2.3778 2.2564 -3.1705 34 1 3.0865 -1.0279 -2.2371 35 1 1.5451 -1.9178 -2.2375 36 1 2.7149 -3.9429 -1.4121 37 1 4.2561 -3.0522 -1.4119 38 1 4.7657 -5.7128 -5.2556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352617084.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:51 Heat of formation + Delta-G solvation = -158.772324 kcal Electronic energy + Delta-G solvation = -20777.739867 eV Core-core repulsion = 17552.847498 eV Total energy + Delta-G solvation = -3224.892369 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.14602 -38.25700 -37.10950 -36.64079 -35.89980 -35.14264 -33.47968 -29.21575 -28.49506 -27.90372 -26.59271 -23.14461 -21.59037 -21.29141 -19.94036 -19.48974 -18.85367 -17.95180 -17.60405 -17.09432 -16.42920 -16.40906 -15.74581 -15.31818 -15.07872 -14.83486 -14.58168 -14.43884 -13.81813 -13.73960 -13.52705 -13.39469 -13.23607 -13.18244 -13.07848 -12.96992 -12.68855 -12.31628 -12.23722 -12.07917 -11.99930 -11.80088 -11.66397 -11.32828 -11.19737 -10.85359 -10.77194 -9.88874 -8.37546 -6.43155 -0.75496 1.30454 1.32054 1.42959 1.64691 2.28684 2.75767 2.95897 3.11508 3.20279 3.57835 3.69086 3.90515 3.99607 4.06461 4.09146 4.36814 4.44623 4.47904 4.53555 4.57352 4.65882 4.73307 4.84330 4.93842 5.03986 5.05439 5.11296 5.16990 5.22400 5.37263 5.44255 5.46018 5.65621 6.16613 6.62049 6.95897 7.20885 8.78263 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026859 B = 0.005317 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.245126 B = 5265.059347 C = 5779.060294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.989 5.989 3 C 0.135 3.865 4 H 0.088 0.912 5 C -0.131 4.131 6 C -0.113 4.113 7 C -0.150 4.150 8 C 0.082 3.918 9 H 0.091 0.909 10 O -0.584 6.584 11 S 2.612 3.388 12 O -0.985 6.985 13 O -0.992 6.992 14 C -0.583 4.583 15 C -0.015 4.015 16 C -0.527 4.527 17 H 0.048 0.952 18 C 0.015 3.985 19 N -0.939 5.939 20 Si 0.925 3.075 21 H -0.258 1.258 22 H -0.271 1.271 23 H -0.253 1.253 24 H 0.069 0.931 25 H 0.102 0.898 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.396 0.604 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.031 0.969 37 H 0.028 0.972 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.458 19.549 10.822 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.827 5.827 3 C 0.028 3.972 4 H 0.106 0.894 5 C -0.170 4.170 6 C -0.151 4.151 7 C -0.189 4.189 8 C 0.022 3.978 9 H 0.108 0.892 10 O -0.392 6.392 11 S 2.710 3.290 12 O -0.976 6.976 13 O -0.982 6.982 14 C -0.714 4.714 15 C -0.054 4.054 16 C -0.565 4.565 17 H 0.066 0.934 18 C -0.184 4.184 19 N -0.579 5.579 20 Si 0.747 3.253 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.177 1.177 24 H 0.087 0.913 25 H 0.120 0.880 26 H 0.090 0.910 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.246 0.754 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.891 18.526 11.933 23.763 hybrid contribution 0.277 -0.366 -1.086 1.179 sum -8.614 18.160 10.847 22.840 Atomic orbital electron populations 1.21747 0.76774 1.04471 1.03382 1.57287 1.15968 1.19870 1.89600 1.21949 0.96508 0.82812 0.95887 0.89416 1.22441 1.03207 0.95160 0.96215 1.22003 1.03265 0.94859 0.94988 1.22986 1.02562 0.96112 0.97198 1.23353 0.95546 0.93620 0.85323 0.89173 1.86531 1.64810 1.65857 1.22036 1.04746 0.73078 0.73277 0.77894 1.93503 1.65162 1.63744 1.75155 1.93489 1.45838 1.83517 1.75346 1.30274 1.10416 1.07087 1.23658 1.19363 0.95759 0.92083 0.98219 1.21144 1.36826 1.07555 0.91021 0.93419 1.25861 0.95670 0.99351 0.97477 1.70007 1.43475 1.27094 1.17321 0.86026 0.79297 0.79765 0.80174 1.18229 1.19597 1.17686 0.91279 0.87997 0.90962 0.89352 0.91335 0.89393 0.90601 0.88860 0.91287 0.75398 0.84896 0.84581 0.95089 0.95401 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.51 8.99 127.77 1.15 2.66 16 2 N -0.99 -25.71 3.10 -510.91 -1.59 -27.29 16 3 C 0.13 3.15 2.92 46.07 0.13 3.28 16 4 H 0.09 2.55 6.94 -2.39 -0.02 2.53 16 5 C -0.13 -2.23 6.43 31.32 0.20 -2.03 16 6 C -0.11 -1.31 6.81 31.32 0.21 -1.10 16 7 C -0.15 -1.93 6.56 31.71 0.21 -1.72 16 8 C 0.08 1.46 3.81 31.93 0.12 1.58 16 9 H 0.09 1.24 6.25 -2.39 -0.01 1.23 16 10 O -0.58 -13.00 13.45 -148.98 -2.00 -15.00 16 11 S 2.61 94.31 5.37 -56.49 -0.30 94.00 16 12 O -0.99 -39.24 17.09 -127.65 -2.18 -41.42 16 13 O -0.99 -41.25 16.59 -127.65 -2.12 -43.37 16 14 C -0.58 -23.15 6.12 71.98 0.44 -22.71 16 15 C -0.02 -0.76 4.05 29.85 0.12 -0.64 16 16 C -0.53 -30.98 9.66 25.60 0.25 -30.73 16 17 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 18 C 0.01 0.89 5.47 84.66 0.46 1.35 16 19 N -0.94 -58.86 13.96 21.45 0.30 -58.56 16 20 Si 0.92 45.06 27.47 68.60 1.88 46.94 16 21 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.25 -11.87 6.54 99.48 0.65 -11.22 16 24 H 0.07 1.15 7.88 -2.39 -0.02 1.14 16 25 H 0.10 1.24 6.24 -2.39 -0.01 1.22 16 26 H 0.07 1.41 7.79 -2.39 -0.02 1.39 16 27 H 0.09 1.29 6.84 -2.39 -0.02 1.28 16 28 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.40 5.31 9.12 -74.05 -0.68 4.64 16 34 H 0.13 5.21 8.14 -2.39 -0.02 5.19 16 35 H 0.14 4.89 8.14 -2.39 -0.02 4.87 16 36 H 0.03 1.50 7.57 -2.39 -0.02 1.48 16 37 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 38 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -77.98 317.72 -2.39 -80.37 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.32 Total: 14.38 kcal Atomic # 6 Polarization: -53.35 SS G_CDS: 3.30 Total: -50.05 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -1.29 Total: -85.85 kcal Atomic # 8 Polarization: -93.49 SS G_CDS: -6.30 Total: -99.79 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Atomic # 16 Polarization: 94.31 SS G_CDS: -0.30 Total: 94.00 kcal Total: -77.98 -2.39 -80.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352617084.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.404 kcal (2) G-P(sol) polarization free energy of solvation -77.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds