Wall clock time and date at job start Mon Mar 30 2020 02:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46501 * 119.99883 * 2 1 4 4 H 1.09005 * 110.53640 * 189.69396 * 3 2 1 5 5 C 1.55014 * 110.52294 * 312.35425 * 3 2 1 6 6 C 1.54888 * 102.75177 * 156.61609 * 5 3 2 7 7 C 1.54268 * 104.20093 * 322.04864 * 6 5 3 8 8 C 1.53878 * 106.59407 * 23.61200 * 7 6 5 9 9 H 1.08994 * 110.02900 * 119.33637 * 8 7 6 10 10 O 1.42901 * 110.02641 * 240.71648 * 8 7 6 11 11 S 1.65602 * 120.00055 * 179.97438 * 2 1 3 12 12 O 1.42100 * 104.27623 * 26.07868 * 11 2 1 13 13 O 1.42101 * 104.27621 * 153.93211 * 11 2 1 14 14 C 1.81401 * 104.45110 * 270.00250 * 11 2 1 15 15 C 1.53004 * 109.47097 * 179.97438 * 14 11 2 16 16 C 1.50700 * 109.46991 * 180.02562 * 15 14 11 17 17 H 1.08002 * 120.00010 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00036 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99907 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00101 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47022 * 90.00273 * 20 18 16 22 22 H 1.48506 * 109.46913 * 209.99858 * 20 18 16 23 23 H 1.48496 * 109.47248 * 329.99944 * 20 18 16 24 24 H 1.09005 * 109.47358 * 95.21817 * 1 2 3 25 25 H 1.09002 * 109.47288 * 215.21982 * 1 2 3 26 26 H 1.09000 * 109.47562 * 335.22453 * 1 2 3 27 27 H 1.09001 * 110.75863 * 38.29858 * 5 3 2 28 28 H 1.09000 * 110.90138 * 275.00244 * 5 3 2 29 29 H 1.09003 * 110.48567 * 203.36719 * 6 5 3 30 30 H 1.09004 * 110.60069 * 80.78313 * 6 5 3 31 31 H 1.09006 * 110.02981 * 264.32743 * 7 6 5 32 32 H 1.09002 * 110.07436 * 142.91571 * 7 6 5 33 33 H 0.96697 * 114.00200 * 297.90178 * 10 8 7 34 34 H 1.08998 * 109.47397 * 300.00548 * 14 11 2 35 35 H 1.09002 * 109.47036 * 60.00298 * 14 11 2 36 36 H 1.09001 * 109.46669 * 300.00138 * 15 14 11 37 37 H 1.09002 * 109.46901 * 60.00256 * 15 14 11 38 38 H 0.97001 * 120.00268 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 1 3.2600 1.0968 -0.1719 5 6 1.6221 2.2284 -1.0728 6 6 2.0444 3.6225 -0.5463 7 6 1.8832 3.5137 0.9841 8 6 1.9801 2.0177 1.3310 9 1 2.8231 1.8434 1.9996 10 8 0.7680 1.5787 1.9474 11 16 2.2929 -1.4341 0.0006 12 8 1.3969 -2.3564 -0.6043 13 8 3.5394 -1.1194 -0.6047 14 6 2.5192 -1.8254 1.7574 15 6 3.2808 -3.1457 1.8919 16 6 3.4682 -3.4710 3.3514 17 1 3.0831 -2.8028 4.1074 18 6 4.1322 -4.6213 3.7215 19 7 4.6016 -5.4347 2.8009 20 14 4.3652 -5.0242 5.5306 21 1 3.2144 -5.8310 6.0102 22 1 5.6202 -5.7981 5.7077 23 1 4.4462 -3.7641 6.3120 24 1 -0.3634 -0.0935 -1.0234 25 1 -0.3634 -0.8395 0.5927 26 1 -0.3634 0.9330 0.4306 27 1 0.5362 2.1467 -1.1219 28 1 2.0672 2.0328 -2.0484 29 1 1.3878 4.3958 -0.9450 30 1 3.0818 3.8327 -0.8066 31 1 0.9115 3.9049 1.2859 32 1 2.6792 4.0653 1.4843 33 1 0.5697 2.0208 2.7843 34 1 3.0864 -1.0278 2.2372 35 1 1.5450 -1.9179 2.2375 36 1 2.7130 -3.9430 1.4122 37 1 4.2550 -3.0537 1.4118 38 1 5.0691 -6.2438 3.0612 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352617086.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:55 Heat of formation + Delta-G solvation = -129.879014 kcal Electronic energy + Delta-G solvation = -20810.047058 eV Core-core repulsion = 17586.407596 eV Total energy + Delta-G solvation = -3223.639462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.36897 -36.55635 -35.48899 -35.22740 -34.22990 -33.83706 -31.10340 -28.22191 -27.95622 -25.62679 -25.22369 -21.58841 -20.87935 -20.29498 -18.66075 -17.86876 -16.84594 -16.31081 -16.26365 -15.43036 -15.27052 -14.85476 -14.53062 -14.41180 -13.74992 -13.50082 -13.25523 -12.74483 -12.52559 -12.32363 -12.01718 -11.73217 -11.68495 -11.50749 -11.42830 -11.34487 -11.08753 -11.05458 -10.96110 -10.90516 -10.60008 -10.35262 -10.33043 -10.00678 -9.69308 -9.23188 -8.56375 -8.47721 -6.09698 -4.14989 0.86719 3.10217 3.27392 3.33348 3.36130 4.08110 4.32063 4.35781 4.39325 4.49748 4.64956 4.83464 5.05761 5.16896 5.25323 5.26333 5.31201 5.38871 5.50829 5.65797 5.73813 5.75197 5.79368 5.85462 5.87380 6.00411 6.09414 6.22175 6.37030 6.56986 6.82614 7.34446 7.40743 7.58761 7.83518 8.21442 8.88446 9.49434 11.01440 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.025311 B = 0.005047 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.967311 B = 5546.387870 C = 6065.811272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.988 5.988 3 C 0.149 3.851 4 H 0.116 0.884 5 C -0.129 4.129 6 C -0.122 4.122 7 C -0.155 4.155 8 C 0.082 3.918 9 H 0.063 0.937 10 O -0.547 6.547 11 S 2.589 3.411 12 O -0.964 6.964 13 O -0.970 6.970 14 C -0.585 4.585 15 C 0.027 3.973 16 C -0.518 4.518 17 H 0.061 0.939 18 C 0.057 3.943 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 H 0.042 0.958 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.370 0.630 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.032 0.968 37 H 0.032 0.968 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.379 19.050 -3.506 20.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.823 5.823 3 C 0.042 3.958 4 H 0.134 0.866 5 C -0.168 4.168 6 C -0.160 4.160 7 C -0.193 4.193 8 C 0.021 3.979 9 H 0.081 0.919 10 O -0.352 6.352 11 S 2.688 3.312 12 O -0.955 6.955 13 O -0.960 6.960 14 C -0.718 4.718 15 C -0.012 4.012 16 C -0.558 4.558 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.217 0.783 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.068 18.026 -4.883 19.968 hybrid contribution 0.116 0.311 2.218 2.243 sum -6.951 18.337 -2.665 19.790 Atomic orbital electron populations 1.21387 0.78498 1.03771 1.00387 1.57354 1.15152 1.19996 1.89780 1.21898 0.97395 0.83519 0.93006 0.86581 1.22835 1.01891 0.93707 0.98393 1.22256 1.01732 0.97166 0.94849 1.22903 1.02525 0.96706 0.97197 1.22951 0.87532 0.92578 0.94881 0.91928 1.86646 1.41302 1.67219 1.40067 1.05714 0.73516 0.72694 0.79284 1.93532 1.64743 1.62052 1.75149 1.93510 1.44189 1.82999 1.75341 1.30437 1.10135 1.10196 1.21061 1.18968 0.94921 0.87369 0.99916 1.21009 1.36931 1.06961 0.90861 0.92101 1.25069 0.95345 0.96119 0.97965 1.69960 1.37403 1.12668 1.32913 0.86474 0.77716 0.78464 0.84638 1.20465 1.21021 1.19817 0.93904 0.91949 0.89203 0.90341 0.90824 0.91356 0.91178 0.90756 0.91259 0.78294 0.86597 0.86240 0.94944 0.94977 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.36 7.96 59.84 0.48 1.84 16 2 N -0.99 -14.58 2.90 -112.77 -0.33 -14.91 16 3 C 0.15 1.86 3.24 -66.21 -0.21 1.65 16 4 H 0.12 1.54 6.83 -51.93 -0.35 1.18 16 5 C -0.13 -1.32 6.36 -24.67 -0.16 -1.47 16 6 C -0.12 -0.97 6.83 -25.07 -0.17 -1.14 16 7 C -0.16 -1.19 6.61 -25.61 -0.17 -1.36 16 8 C 0.08 0.82 4.19 -25.61 -0.11 0.71 16 9 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 10 O -0.55 -5.38 9.62 -35.23 -0.34 -5.72 16 11 S 2.59 49.66 5.39 -107.50 -0.58 49.08 16 12 O -0.96 -21.21 17.19 -57.54 -0.99 -22.20 16 13 O -0.97 -20.70 16.54 -57.54 -0.95 -21.65 16 14 C -0.58 -11.82 6.12 37.16 0.23 -11.59 16 15 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 16 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 20 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.83 7.98 -51.93 -0.41 0.41 16 26 H 0.09 1.00 5.50 -51.93 -0.29 0.72 16 27 H 0.08 0.79 6.68 -51.93 -0.35 0.44 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.52 7.96 -51.93 -0.41 0.10 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.37 2.26 9.11 45.56 0.41 2.67 16 34 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 35 H 0.12 2.24 8.14 -51.92 -0.42 1.81 16 36 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 318.16 15.07 4.79 4.79 Total: -1.00 -35.14 318.16 -8.51 -43.65 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.17 Total: 0.84 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -0.67 Total: -24.13 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.41 Total: -41.04 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -2.28 Total: -49.58 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 49.66 SS G_CDS: -0.58 Total: 49.08 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.14 -8.51 -43.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352617086.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.226 kcal (2) G-P(sol) polarization free energy of solvation -35.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds