Wall clock time and date at job start Mon Mar 30 2020 02:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46501 * 119.99883 * 2 1 4 4 H 1.09005 * 110.53640 * 189.69396 * 3 2 1 5 5 C 1.55014 * 110.52294 * 312.35425 * 3 2 1 6 6 C 1.54888 * 102.75177 * 156.61609 * 5 3 2 7 7 C 1.54268 * 104.20093 * 322.04864 * 6 5 3 8 8 C 1.53878 * 106.59407 * 23.61200 * 7 6 5 9 9 H 1.08994 * 110.02900 * 119.33637 * 8 7 6 10 10 O 1.42901 * 110.02641 * 240.71648 * 8 7 6 11 11 S 1.65602 * 120.00055 * 179.97438 * 2 1 3 12 12 O 1.42100 * 104.27623 * 26.07868 * 11 2 1 13 13 O 1.42101 * 104.27621 * 153.93211 * 11 2 1 14 14 C 1.81401 * 104.45110 * 270.00250 * 11 2 1 15 15 C 1.53004 * 109.47097 * 179.97438 * 14 11 2 16 16 C 1.50700 * 109.46991 * 180.02562 * 15 14 11 17 17 H 1.08002 * 120.00010 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00036 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99907 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00101 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47022 * 90.00273 * 20 18 16 22 22 H 1.48506 * 109.46913 * 209.99858 * 20 18 16 23 23 H 1.48496 * 109.47248 * 329.99944 * 20 18 16 24 24 H 1.09005 * 109.47358 * 95.21817 * 1 2 3 25 25 H 1.09002 * 109.47288 * 215.21982 * 1 2 3 26 26 H 1.09000 * 109.47562 * 335.22453 * 1 2 3 27 27 H 1.09001 * 110.75863 * 38.29858 * 5 3 2 28 28 H 1.09000 * 110.90138 * 275.00244 * 5 3 2 29 29 H 1.09003 * 110.48567 * 203.36719 * 6 5 3 30 30 H 1.09004 * 110.60069 * 80.78313 * 6 5 3 31 31 H 1.09006 * 110.02981 * 264.32743 * 7 6 5 32 32 H 1.09002 * 110.07436 * 142.91571 * 7 6 5 33 33 H 0.96697 * 114.00200 * 297.90178 * 10 8 7 34 34 H 1.08998 * 109.47397 * 300.00548 * 14 11 2 35 35 H 1.09002 * 109.47036 * 60.00298 * 14 11 2 36 36 H 1.09001 * 109.46669 * 300.00138 * 15 14 11 37 37 H 1.09002 * 109.46901 * 60.00256 * 15 14 11 38 38 H 0.97001 * 120.00268 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 1 3.2600 1.0968 -0.1719 5 6 1.6221 2.2284 -1.0728 6 6 2.0444 3.6225 -0.5463 7 6 1.8832 3.5137 0.9841 8 6 1.9801 2.0177 1.3310 9 1 2.8231 1.8434 1.9996 10 8 0.7680 1.5787 1.9474 11 16 2.2929 -1.4341 0.0006 12 8 1.3969 -2.3564 -0.6043 13 8 3.5394 -1.1194 -0.6047 14 6 2.5192 -1.8254 1.7574 15 6 3.2808 -3.1457 1.8919 16 6 3.4682 -3.4710 3.3514 17 1 3.0831 -2.8028 4.1074 18 6 4.1322 -4.6213 3.7215 19 7 4.6016 -5.4347 2.8009 20 14 4.3652 -5.0242 5.5306 21 1 3.2144 -5.8310 6.0102 22 1 5.6202 -5.7981 5.7077 23 1 4.4462 -3.7641 6.3120 24 1 -0.3634 -0.0935 -1.0234 25 1 -0.3634 -0.8395 0.5927 26 1 -0.3634 0.9330 0.4306 27 1 0.5362 2.1467 -1.1219 28 1 2.0672 2.0328 -2.0484 29 1 1.3878 4.3958 -0.9450 30 1 3.0818 3.8327 -0.8066 31 1 0.9115 3.9049 1.2859 32 1 2.6792 4.0653 1.4843 33 1 0.5697 2.0208 2.7843 34 1 3.0864 -1.0278 2.2372 35 1 1.5450 -1.9179 2.2375 36 1 2.7130 -3.9430 1.4122 37 1 4.2550 -3.0537 1.4118 38 1 5.0691 -6.2438 3.0612 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352617086.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:55 Heat of formation + Delta-G solvation = -157.288937 kcal Electronic energy + Delta-G solvation = -20811.235641 eV Core-core repulsion = 17586.407596 eV Total energy + Delta-G solvation = -3224.828045 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.19263 -38.21646 -37.05089 -36.22269 -35.89565 -35.11542 -33.13417 -29.10232 -28.70260 -27.60367 -26.34711 -23.54053 -21.56290 -21.29299 -19.88776 -19.32020 -18.55730 -17.62560 -17.41876 -17.07647 -16.53003 -16.39043 -15.77764 -15.29487 -15.19050 -14.55335 -14.50869 -14.42251 -13.74933 -13.66442 -13.55334 -13.26599 -13.15830 -12.93880 -12.79860 -12.70862 -12.42036 -12.27245 -12.18655 -12.06552 -12.00537 -11.95203 -11.71867 -11.34887 -11.07121 -10.70763 -10.65845 -9.74687 -8.26819 -6.41476 -0.69546 1.39952 1.42404 1.53486 1.74370 2.37500 2.83654 3.06214 3.15356 3.34518 3.55140 3.70243 3.96867 4.06682 4.11264 4.18072 4.43546 4.48821 4.54592 4.61058 4.72731 4.80543 4.85240 4.95995 5.05732 5.16533 5.23109 5.24573 5.24977 5.27468 5.36476 5.49842 5.66841 5.72951 6.05009 6.71740 7.04775 7.28777 8.85677 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.025311 B = 0.005047 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.967311 B = 5546.387870 C = 6065.811272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.977 5.977 3 C 0.130 3.870 4 H 0.102 0.898 5 C -0.128 4.128 6 C -0.118 4.118 7 C -0.146 4.146 8 C 0.084 3.916 9 H 0.061 0.939 10 O -0.560 6.560 11 S 2.608 3.392 12 O -0.996 6.996 13 O -0.996 6.996 14 C -0.581 4.581 15 C 0.021 3.979 16 C -0.539 4.539 17 H 0.075 0.925 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.976 3.024 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.257 1.257 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.114 0.886 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.388 0.612 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.004 0.996 37 H 0.005 0.995 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.372 21.450 -1.882 23.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.814 5.814 3 C 0.024 3.976 4 H 0.120 0.880 5 C -0.167 4.167 6 C -0.156 4.156 7 C -0.184 4.184 8 C 0.023 3.977 9 H 0.079 0.921 10 O -0.369 6.369 11 S 2.706 3.294 12 O -0.987 6.987 13 O -0.986 6.986 14 C -0.713 4.713 15 C -0.018 4.018 16 C -0.578 4.578 17 H 0.093 0.907 18 C -0.202 4.202 19 N -0.575 5.575 20 Si 0.800 3.200 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.181 1.181 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.133 0.867 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.238 0.762 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.065 20.439 -3.239 22.210 hybrid contribution 0.389 -0.377 1.650 1.737 sum -7.676 20.062 -1.589 21.539 Atomic orbital electron populations 1.21603 0.77004 1.04926 1.00946 1.56976 1.15818 1.19183 1.89417 1.22261 0.96662 0.82802 0.95922 0.88011 1.22851 1.01985 0.94483 0.97413 1.22268 1.02347 0.95908 0.95054 1.22844 1.03837 0.94811 0.96897 1.22863 0.87741 0.93701 0.93422 0.92074 1.86562 1.40967 1.67965 1.41357 1.04835 0.72883 0.73262 0.78371 1.93482 1.65414 1.64161 1.75598 1.93467 1.45875 1.83632 1.75649 1.30318 1.10350 1.07500 1.23091 1.18827 0.94045 0.89832 0.99079 1.21493 1.36899 1.07469 0.91903 0.90722 1.26144 0.94807 0.95916 1.03348 1.70110 1.38367 1.13340 1.35670 0.85278 0.77779 0.78789 0.78188 1.19549 1.20709 1.18092 0.93468 0.92347 0.86746 0.89865 0.91459 0.89666 0.90837 0.89394 0.89956 0.76164 0.84612 0.84575 0.97809 0.97636 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.43 7.96 127.77 1.02 3.45 16 2 N -0.98 -27.98 2.90 -510.69 -1.48 -29.46 16 3 C 0.13 3.08 3.24 46.11 0.15 3.23 16 4 H 0.10 2.68 6.83 -2.38 -0.02 2.67 16 5 C -0.13 -2.37 6.36 31.93 0.20 -2.16 16 6 C -0.12 -1.51 6.83 31.67 0.22 -1.30 16 7 C -0.15 -1.72 6.61 31.32 0.21 -1.51 16 8 C 0.08 1.48 4.19 31.32 0.13 1.61 16 9 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 10 O -0.56 -9.33 9.62 -148.98 -1.43 -10.77 16 11 S 2.61 101.83 5.39 -56.49 -0.30 101.52 16 12 O -1.00 -44.94 17.19 -127.65 -2.19 -47.13 16 13 O -1.00 -43.76 16.54 -127.65 -2.11 -45.87 16 14 C -0.58 -23.59 6.12 71.98 0.44 -23.15 16 15 C 0.02 1.14 4.98 29.85 0.15 1.29 16 16 C -0.54 -30.59 9.11 25.60 0.23 -30.36 16 17 H 0.07 3.92 7.74 -2.91 -0.02 3.90 16 18 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 19 N -0.94 -57.86 13.29 21.45 0.28 -57.57 16 20 Si 0.98 43.71 29.54 68.60 2.03 45.74 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 24 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.06 1.48 7.98 -2.39 -0.02 1.46 16 26 H 0.11 2.24 5.50 -2.39 -0.01 2.23 16 27 H 0.08 1.46 6.68 -2.39 -0.02 1.44 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 0.84 7.96 -2.38 -0.02 0.82 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.39 3.41 9.11 -74.06 -0.67 2.73 16 34 H 0.14 4.90 8.14 -2.39 -0.02 4.88 16 35 H 0.14 5.01 8.14 -2.39 -0.02 4.99 16 36 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -77.04 318.16 -1.63 -78.66 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.38 Total: 13.55 kcal Atomic # 6 Polarization: -51.87 SS G_CDS: 3.21 Total: -48.67 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -1.19 Total: -87.04 kcal Atomic # 8 Polarization: -98.04 SS G_CDS: -5.74 Total: -103.77 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 101.83 SS G_CDS: -0.30 Total: 101.52 kcal Total: -77.04 -1.63 -78.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352617086.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.626 kcal (2) G-P(sol) polarization free energy of solvation -77.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds