Wall clock time and date at job start Mon Mar 30 2020 01:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46871 * 2 1 4 4 N 1.46492 * 109.47072 * 120.00353 * 2 1 3 5 5 S 1.65606 * 120.00135 * 264.99868 * 4 2 1 6 6 O 1.42100 * 104.27450 * 308.93172 * 5 4 2 7 7 O 1.42093 * 104.28025 * 181.07088 * 5 4 2 8 8 C 1.81403 * 104.44724 * 64.99830 * 5 4 2 9 9 C 1.53001 * 109.47153 * 180.02562 * 8 5 4 10 10 C 1.50694 * 109.47168 * 180.02562 * 9 8 5 11 11 H 1.08000 * 120.00563 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 C 1.53003 * 109.46759 * 240.00410 * 2 1 3 19 19 H 1.08998 * 110.74865 * 302.01644 * 18 2 1 20 20 C 1.55303 * 110.85143 * 65.71529 * 18 2 1 21 21 C 1.54945 * 100.94168 * 152.32089 * 20 18 2 22 22 O 1.43643 * 105.13709 * 323.55720 * 21 20 18 23 23 C 1.43241 * 109.97435 * 24.42503 * 22 21 20 24 24 H 1.08994 * 109.47443 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47154 * 300.00116 * 1 2 3 26 26 H 1.09000 * 109.46901 * 59.99938 * 1 2 3 27 27 H 0.97001 * 120.00007 * 84.99681 * 4 2 1 28 28 H 1.09002 * 109.46959 * 60.00458 * 8 5 4 29 29 H 1.08998 * 109.47334 * 299.99936 * 8 5 4 30 30 H 1.09007 * 109.46922 * 59.99828 * 9 8 5 31 31 H 1.09003 * 109.46836 * 300.00583 * 9 8 5 32 32 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 33 33 H 1.08992 * 111.12263 * 270.24141 * 20 18 2 34 34 H 1.09002 * 111.12559 * 34.40171 * 20 18 2 35 35 H 1.09003 * 110.31134 * 204.64103 * 21 20 18 36 36 H 1.08998 * 110.30849 * 82.47106 * 21 20 18 37 37 H 1.09000 * 109.83177 * 238.78086 * 23 22 21 38 38 H 1.08997 * 109.90197 * 117.84192 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 16 2.4122 0.1771 2.5505 6 8 3.2875 1.1905 2.0751 7 8 2.8606 -0.8030 3.4765 8 6 0.8408 0.8988 3.0985 9 6 1.0753 1.7349 4.3582 10 6 -0.2302 2.3339 4.8138 11 1 -1.1367 2.1377 4.2605 12 6 -0.2675 3.1327 5.9371 13 7 0.8363 3.3713 6.6112 14 14 -1.8857 3.8759 6.5014 15 1 -1.6580 4.6873 7.7242 16 1 -2.4340 4.7420 5.4270 17 1 -2.8515 2.7887 6.8021 18 6 2.0400 -0.7212 -1.2493 19 1 1.6592 -1.7417 -1.2886 20 6 1.6614 0.0645 -2.5344 21 6 2.8026 -0.3668 -3.4897 22 8 3.9694 -0.4687 -2.6582 23 6 3.5829 -0.7081 -1.2998 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 2.1109 -1.6562 1.1947 28 1 0.1316 0.1008 3.3184 29 1 0.4387 1.5352 2.3102 30 1 1.7845 2.5329 4.1378 31 1 1.4777 1.0988 5.1467 32 1 0.8102 3.9335 7.4012 33 1 0.6900 -0.2503 -2.9154 34 1 1.6823 1.1399 -2.3578 35 1 2.9537 0.3864 -4.2630 36 1 2.5738 -1.3324 -3.9405 37 1 3.9671 0.0866 -0.6604 38 1 3.9719 -1.6706 -0.9675 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355318386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:41 Heat of formation + Delta-G solvation = -138.505462 kcal Electronic energy + Delta-G solvation = -20289.481604 eV Core-core repulsion = 17065.468071 eV Total energy + Delta-G solvation = -3224.013532 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.84499 -36.78510 -36.33948 -35.45716 -33.92736 -32.10083 -31.22592 -29.49472 -29.01973 -25.62469 -23.34292 -22.56426 -21.63978 -20.81201 -19.01281 -17.58600 -17.01790 -16.63263 -16.18836 -15.73109 -15.40660 -14.95897 -14.80875 -14.57939 -13.77879 -13.59476 -13.33351 -13.24211 -12.77031 -12.51130 -12.36764 -11.86545 -11.72537 -11.63198 -11.59045 -11.46386 -11.22963 -11.11066 -11.08036 -10.99040 -10.80891 -10.44364 -10.38611 -9.85570 -9.67510 -9.53640 -9.07967 -8.51771 -6.14021 -4.19886 0.75926 3.06803 3.25611 3.30730 3.32240 3.68604 4.13558 4.20977 4.35102 4.38277 4.61252 4.72002 4.89576 4.95124 4.99513 5.15705 5.20384 5.21065 5.30681 5.46427 5.53032 5.53583 5.62313 5.68432 5.71143 5.73219 5.93018 6.05530 6.12695 6.47976 6.81840 7.04871 7.27851 7.34095 7.78382 8.15410 8.83204 9.44911 10.96975 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030079 B = 0.004224 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.669954 B = 6627.525284 C = 7114.380005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.155 3.845 3 H 0.097 0.903 4 N -1.124 6.124 5 S 2.590 3.410 6 O -0.965 6.965 7 O -0.967 6.967 8 C -0.590 4.590 9 C 0.028 3.972 10 C -0.521 4.521 11 H 0.061 0.939 12 C 0.058 3.942 13 N -0.890 5.890 14 Si 0.900 3.100 15 H -0.285 1.285 16 H -0.275 1.275 17 H -0.275 1.275 18 C -0.123 4.123 19 H 0.091 0.909 20 C -0.150 4.150 21 C 0.051 3.949 22 O -0.386 6.386 23 C 0.052 3.948 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.412 0.588 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.034 0.966 31 H 0.033 0.967 32 H 0.266 0.734 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.022 -8.652 -18.188 20.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.047 3.953 3 H 0.115 0.885 4 N -0.880 5.880 5 S 2.688 3.312 6 O -0.955 6.955 7 O -0.957 6.957 8 C -0.724 4.724 9 C -0.011 4.011 10 C -0.561 4.561 11 H 0.079 0.921 12 C -0.144 4.144 13 N -0.528 5.528 14 Si 0.727 3.273 15 H -0.211 1.211 16 H -0.201 1.201 17 H -0.201 1.201 18 C -0.144 4.144 19 H 0.109 0.891 20 C -0.189 4.189 21 C -0.026 4.026 22 O -0.305 6.305 23 C -0.024 4.024 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.245 0.755 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.166 -8.284 -17.743 19.582 hybrid contribution -1.818 -0.012 0.377 1.857 sum -1.652 -8.296 -17.366 19.316 Atomic orbital electron populations 1.22496 0.94905 1.03126 1.03428 1.20762 0.94111 0.96687 0.83703 0.88524 1.55922 1.84391 1.19603 1.28085 1.05629 0.78276 0.74452 0.72871 1.93549 1.62402 1.60174 1.79412 1.93555 1.80546 1.59345 1.62288 1.30550 1.18957 1.11731 1.11128 1.18962 0.99571 0.94310 0.88249 1.20954 0.93382 1.30610 1.11144 0.92111 1.25068 0.96790 0.96224 0.96361 1.69945 1.26980 1.37641 1.18231 0.86529 0.83348 0.79212 0.78169 1.21062 1.20081 1.20097 1.22985 0.96071 1.00645 0.94667 0.89076 1.23336 0.99582 1.01554 0.94393 1.23360 0.84798 1.00576 0.93860 1.88412 1.30144 1.93652 1.18317 1.23250 0.93486 1.01981 0.83730 0.91737 0.91009 0.91215 0.75479 0.86044 0.86203 0.94819 0.94865 0.92447 0.89525 0.89650 0.89743 0.92341 0.90041 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 9.32 37.16 0.35 -1.26 16 2 C 0.15 1.61 2.18 -67.93 -0.15 1.46 16 3 H 0.10 1.11 7.46 -51.93 -0.39 0.72 16 4 N -1.12 -13.45 5.05 -4.89 -0.02 -13.48 16 5 S 2.59 44.74 5.44 -107.50 -0.58 44.15 16 6 O -0.97 -19.48 17.39 -57.54 -1.00 -20.48 16 7 O -0.97 -19.71 18.08 -57.54 -1.04 -20.76 16 8 C -0.59 -10.87 5.16 37.16 0.19 -10.67 16 9 C 0.03 0.70 4.98 -27.89 -0.14 0.57 16 10 C -0.52 -14.19 9.11 -34.44 -0.31 -14.50 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 14 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 C -0.12 -1.09 2.65 -88.67 -0.24 -1.33 16 19 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 20 C -0.15 -1.12 5.74 -24.48 -0.14 -1.26 16 21 C 0.05 0.42 7.78 38.18 0.30 0.72 16 22 O -0.39 -4.67 11.36 -35.23 -0.40 -5.07 16 23 C 0.05 0.58 7.10 37.88 0.27 0.85 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.72 5.78 -51.93 -0.30 0.42 16 26 H 0.07 0.50 7.48 -51.93 -0.39 0.12 16 27 H 0.41 4.05 8.80 -34.47 -0.30 3.74 16 28 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 29 H 0.12 1.95 6.77 -51.93 -0.35 1.60 16 30 H 0.03 0.89 8.14 -51.92 -0.42 0.47 16 31 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.65 8.03 -51.93 -0.42 0.24 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 1.06 7.81 -51.93 -0.41 0.66 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 322.40 15.07 4.86 4.86 Total: -1.00 -34.81 322.40 -8.35 -43.15 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.90 Total: 1.12 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: 0.03 Total: -23.89 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.71 Total: -39.04 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -2.44 Total: -46.30 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 44.74 SS G_CDS: -0.58 Total: 44.15 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.81 -8.35 -43.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355318386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.353 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds