Wall clock time and date at job start Mon Mar 30 2020 01:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46871 * 2 1 4 4 N 1.46492 * 109.47072 * 120.00353 * 2 1 3 5 5 S 1.65606 * 120.00135 * 264.99868 * 4 2 1 6 6 O 1.42100 * 104.27450 * 308.93172 * 5 4 2 7 7 O 1.42093 * 104.28025 * 181.07088 * 5 4 2 8 8 C 1.81403 * 104.44724 * 64.99830 * 5 4 2 9 9 C 1.53001 * 109.47153 * 180.02562 * 8 5 4 10 10 C 1.50694 * 109.47168 * 180.02562 * 9 8 5 11 11 H 1.08000 * 120.00563 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 C 1.53003 * 109.46759 * 240.00410 * 2 1 3 19 19 H 1.08998 * 110.74865 * 302.01644 * 18 2 1 20 20 C 1.55303 * 110.85143 * 65.71529 * 18 2 1 21 21 C 1.54945 * 100.94168 * 152.32089 * 20 18 2 22 22 O 1.43643 * 105.13709 * 323.55720 * 21 20 18 23 23 C 1.43241 * 109.97435 * 24.42503 * 22 21 20 24 24 H 1.08994 * 109.47443 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47154 * 300.00116 * 1 2 3 26 26 H 1.09000 * 109.46901 * 59.99938 * 1 2 3 27 27 H 0.97001 * 120.00007 * 84.99681 * 4 2 1 28 28 H 1.09002 * 109.46959 * 60.00458 * 8 5 4 29 29 H 1.08998 * 109.47334 * 299.99936 * 8 5 4 30 30 H 1.09007 * 109.46922 * 59.99828 * 9 8 5 31 31 H 1.09003 * 109.46836 * 300.00583 * 9 8 5 32 32 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 33 33 H 1.08992 * 111.12263 * 270.24141 * 20 18 2 34 34 H 1.09002 * 111.12559 * 34.40171 * 20 18 2 35 35 H 1.09003 * 110.31134 * 204.64103 * 21 20 18 36 36 H 1.08998 * 110.30849 * 82.47106 * 21 20 18 37 37 H 1.09000 * 109.83177 * 238.78086 * 23 22 21 38 38 H 1.08997 * 109.90197 * 117.84192 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 16 2.4122 0.1771 2.5505 6 8 3.2875 1.1905 2.0751 7 8 2.8606 -0.8030 3.4765 8 6 0.8408 0.8988 3.0985 9 6 1.0753 1.7349 4.3582 10 6 -0.2302 2.3339 4.8138 11 1 -1.1367 2.1377 4.2605 12 6 -0.2675 3.1327 5.9371 13 7 0.8363 3.3713 6.6112 14 14 -1.8857 3.8759 6.5014 15 1 -1.6580 4.6873 7.7242 16 1 -2.4340 4.7420 5.4270 17 1 -2.8515 2.7887 6.8021 18 6 2.0400 -0.7212 -1.2493 19 1 1.6592 -1.7417 -1.2886 20 6 1.6614 0.0645 -2.5344 21 6 2.8026 -0.3668 -3.4897 22 8 3.9694 -0.4687 -2.6582 23 6 3.5829 -0.7081 -1.2998 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 2.1109 -1.6562 1.1947 28 1 0.1316 0.1008 3.3184 29 1 0.4387 1.5352 2.3102 30 1 1.7845 2.5329 4.1378 31 1 1.4777 1.0988 5.1467 32 1 0.8102 3.9335 7.4012 33 1 0.6900 -0.2503 -2.9154 34 1 1.6823 1.1399 -2.3578 35 1 2.9537 0.3864 -4.2630 36 1 2.5738 -1.3324 -3.9405 37 1 3.9671 0.0866 -0.6604 38 1 3.9719 -1.6706 -0.9675 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355318386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:41 Heat of formation + Delta-G solvation = -166.046780 kcal Electronic energy + Delta-G solvation = -20290.675885 eV Core-core repulsion = 17065.468071 eV Total energy + Delta-G solvation = -3225.207814 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.61175 -38.20368 -37.37984 -36.99765 -35.89510 -33.14782 -32.94572 -30.27505 -29.79400 -27.57142 -24.25371 -23.44862 -23.21982 -21.61051 -20.34951 -19.13591 -18.29562 -17.86556 -17.23029 -17.04427 -16.69042 -16.50945 -16.01791 -15.76103 -15.17008 -14.58392 -14.45959 -14.18950 -14.05112 -13.79513 -13.44496 -13.35349 -13.21076 -13.13634 -12.89062 -12.77644 -12.52321 -12.25941 -12.21195 -12.17413 -11.93133 -11.90832 -11.72271 -11.56136 -11.16826 -10.63083 -10.47989 -10.39372 -8.25098 -6.39248 -0.67856 1.41714 1.45097 1.53225 1.83498 2.38829 2.80805 2.96015 3.08487 3.26466 3.41071 3.68590 3.90652 3.98693 4.10411 4.24146 4.26386 4.35871 4.36853 4.47584 4.58494 4.73689 4.84065 4.89597 4.94235 4.98518 5.02866 5.21345 5.26708 5.28564 5.33117 5.45983 5.69209 6.06571 6.07550 6.16044 6.74538 7.31068 8.87052 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030079 B = 0.004224 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.669954 B = 6627.525284 C = 7114.380005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.147 3.853 3 H 0.082 0.918 4 N -1.103 6.103 5 S 2.615 3.385 6 O -0.998 6.998 7 O -1.001 7.001 8 C -0.586 4.586 9 C 0.020 3.980 10 C -0.538 4.538 11 H 0.078 0.922 12 C -0.004 4.004 13 N -0.935 5.935 14 Si 0.974 3.026 15 H -0.286 1.286 16 H -0.262 1.262 17 H -0.263 1.263 18 C -0.115 4.115 19 H 0.116 0.884 20 C -0.144 4.144 21 C 0.041 3.959 22 O -0.414 6.414 23 C 0.045 3.955 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.426 0.574 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.005 0.995 31 H 0.004 0.996 32 H 0.267 0.733 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.699 -9.549 -20.181 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.040 3.960 3 H 0.100 0.900 4 N -0.865 5.865 5 S 2.712 3.288 6 O -0.988 6.988 7 O -0.991 6.991 8 C -0.718 4.718 9 C -0.019 4.019 10 C -0.577 4.577 11 H 0.096 0.904 12 C -0.203 4.203 13 N -0.575 5.575 14 Si 0.797 3.203 15 H -0.212 1.212 16 H -0.187 1.187 17 H -0.187 1.187 18 C -0.135 4.135 19 H 0.134 0.866 20 C -0.182 4.182 21 C -0.034 4.034 22 O -0.334 6.334 23 C -0.031 4.031 24 H 0.101 0.899 25 H 0.078 0.922 26 H 0.110 0.890 27 H 0.263 0.737 28 H 0.163 0.837 29 H 0.162 0.838 30 H 0.024 0.976 31 H 0.023 0.977 32 H 0.076 0.924 33 H 0.135 0.865 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.525 -9.194 -19.747 21.928 hybrid contribution -0.921 0.233 0.889 1.301 sum -3.446 -8.961 -18.859 21.162 Atomic orbital electron populations 1.22509 0.92933 1.04505 1.03938 1.21017 0.95614 0.96042 0.83287 0.90029 1.55386 1.84185 1.20080 1.26809 1.04556 0.77420 0.73706 0.73122 1.93508 1.63480 1.61734 1.80092 1.93501 1.81146 1.60124 1.64328 1.30441 1.20655 1.12033 1.08716 1.18824 0.98412 0.94057 0.90630 1.21493 0.94583 1.30317 1.11328 0.90388 1.26129 1.00690 0.96831 0.96621 1.70104 1.29694 1.38775 1.18928 0.85364 0.78570 0.78585 0.77735 1.21165 1.18652 1.18746 1.22972 0.94093 1.02057 0.94360 0.86604 1.23367 1.00619 1.01136 0.93113 1.23622 0.84035 1.01926 0.93847 1.88382 1.32397 1.93800 1.18838 1.23262 0.95460 1.01082 0.83318 0.89937 0.92200 0.89045 0.73717 0.83677 0.83806 0.97638 0.97726 0.92440 0.86519 0.90135 0.88864 0.90670 0.92901 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 9.32 71.98 0.67 -1.86 16 2 C 0.15 2.73 2.18 45.00 0.10 2.83 16 3 H 0.08 1.79 7.46 -2.39 -0.02 1.78 16 4 N -1.10 -24.77 5.05 -169.39 -0.85 -25.63 16 5 S 2.61 90.96 5.44 -56.49 -0.31 90.65 16 6 O -1.00 -41.50 17.39 -127.65 -2.22 -43.72 16 7 O -1.00 -41.45 18.08 -127.65 -2.31 -43.76 16 8 C -0.59 -21.29 5.16 71.98 0.37 -20.92 16 9 C 0.02 1.01 4.98 29.85 0.15 1.16 16 10 C -0.54 -29.34 9.11 25.60 0.23 -29.11 16 11 H 0.08 3.87 7.74 -2.91 -0.02 3.84 16 12 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 13 N -0.94 -56.83 13.29 21.45 0.28 -56.54 16 14 Si 0.97 42.70 29.54 68.60 2.03 44.73 16 15 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 16 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 17 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 18 C -0.11 -1.72 2.65 -9.53 -0.03 -1.74 16 19 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 20 C -0.14 -1.69 5.74 32.05 0.18 -1.50 16 21 C 0.04 0.60 7.78 72.65 0.56 1.16 16 22 O -0.41 -9.67 11.36 -148.98 -1.69 -11.37 16 23 C 0.05 0.98 7.10 72.45 0.51 1.50 16 24 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.06 1.01 5.78 -2.39 -0.01 0.99 16 26 H 0.09 0.92 7.48 -2.39 -0.02 0.90 16 27 H 0.43 7.46 8.80 -96.74 -0.85 6.61 16 28 H 0.15 4.54 8.14 -2.39 -0.02 4.52 16 29 H 0.14 4.48 6.77 -2.39 -0.02 4.46 16 30 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 31 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.08 1.04 8.03 -2.39 -0.02 1.02 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.05 1.42 7.81 -2.39 -0.02 1.40 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -77.71 322.40 -1.65 -79.36 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.20 Total: 14.52 kcal Atomic # 6 Polarization: -51.48 SS G_CDS: 3.22 Total: -48.26 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -0.57 Total: -82.17 kcal Atomic # 8 Polarization: -92.62 SS G_CDS: -6.22 Total: -98.84 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 90.96 SS G_CDS: -0.31 Total: 90.65 kcal Total: -77.71 -1.65 -79.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355318386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.683 kcal (2) G-P(sol) polarization free energy of solvation -77.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds