Wall clock time and date at job start Mon Mar 30 2020 01:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45197 * 109.46904 * 2 1 4 4 C 1.34694 * 117.00167 * 180.02562 * 3 2 1 5 5 O 1.21442 * 119.99970 * 359.97438 * 4 3 2 6 6 C 1.47922 * 119.99998 * 179.97438 * 4 3 2 7 7 C 1.39608 * 120.00884 * 0.27445 * 6 4 3 8 8 C 1.37808 * 119.99696 * 180.21094 * 7 6 4 9 9 C 1.39556 * 120.00467 * 359.50803 * 8 7 6 10 10 C 1.48049 * 119.99456 * 180.27748 * 9 8 7 11 11 O 1.21523 * 119.99984 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99747 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99563 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.46582 * 179.97438 * 13 12 10 15 15 H 1.07996 * 120.00132 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99378 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00591 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99780 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46983 * 89.99580 * 18 16 14 20 20 H 1.48493 * 109.47172 * 209.99808 * 18 16 14 21 21 H 1.48502 * 109.47185 * 330.00103 * 18 16 14 22 22 C 1.39554 * 120.01062 * 0.26477 * 9 8 7 23 23 C 1.37810 * 120.00864 * 359.96568 * 22 9 8 24 24 H 1.09000 * 109.47355 * 299.99705 * 1 2 3 25 25 H 1.09000 * 109.47551 * 60.00472 * 1 2 3 26 26 H 1.09009 * 109.47010 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47355 * 240.00295 * 2 1 3 28 28 H 1.09000 * 109.47551 * 119.99528 * 2 1 3 29 29 H 1.07998 * 119.99774 * 0.02562 * 7 6 4 30 30 H 1.08002 * 120.00047 * 179.79412 * 8 7 6 31 31 H 0.97000 * 120.00335 * 359.97438 * 12 10 9 32 32 H 1.09000 * 109.46609 * 299.99047 * 13 12 10 33 33 H 1.08996 * 109.47158 * 59.99632 * 13 12 10 34 34 H 0.96997 * 120.00494 * 180.02562 * 17 16 14 35 35 H 1.07998 * 119.99707 * 179.97438 * 22 9 8 36 36 H 1.08001 * 120.00857 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3492 1.5455 -0.0005 5 8 4.0890 0.5825 -0.0005 6 6 3.9145 2.9125 -0.0011 7 6 3.0642 4.0197 0.0046 8 6 3.5911 5.2931 -0.0003 9 6 4.9746 5.4759 -0.0007 10 6 5.5404 6.8440 0.0001 11 8 4.8001 7.8077 0.0017 12 7 6.8766 7.0206 -0.0008 13 6 7.4364 8.3745 0.0006 14 6 8.9414 8.2956 -0.0002 15 1 9.4317 7.3333 -0.0012 16 6 9.6922 9.4520 0.0015 17 7 9.0951 10.6238 0.0032 18 14 11.5577 9.3544 0.0012 19 1 12.0519 9.3304 -1.3990 20 1 12.1154 10.5383 0.7028 21 1 11.9887 8.1166 0.6994 22 6 5.8249 4.3693 -0.0017 23 6 5.2985 3.0956 -0.0016 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.9935 3.8782 0.0100 30 1 2.9333 6.1497 0.0008 31 1 7.4675 6.2514 -0.0017 32 1 7.0997 8.9077 -0.8884 33 1 7.1012 8.9053 0.8916 34 1 9.6233 11.4373 0.0040 35 1 6.8955 4.5110 -0.0025 36 1 5.9565 2.2392 -0.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356055419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:06 Heat of formation + Delta-G solvation = -106.729011 kcal Electronic energy + Delta-G solvation = -19923.649290 eV Core-core repulsion = 16565.569736 eV Total energy + Delta-G solvation = -3358.079553 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.82657 -39.65498 -37.92466 -36.77446 -34.38452 -32.69175 -32.23758 -31.28033 -31.07387 -27.50888 -25.39401 -23.51422 -22.91668 -22.33084 -21.30560 -19.92653 -18.42709 -17.91356 -17.04005 -16.84185 -15.95726 -15.59898 -14.96604 -14.62426 -14.60443 -14.41230 -14.40707 -13.86675 -13.72610 -13.22235 -12.99978 -12.78696 -12.43706 -12.26315 -12.04047 -11.97002 -11.81329 -11.23118 -11.02486 -10.92624 -10.87229 -10.78823 -10.36672 -9.46707 -9.33064 -9.20572 -9.16304 -8.79639 -7.99593 -6.21116 -4.28633 0.28095 1.20242 2.16990 2.31626 3.21936 3.22482 3.28462 3.30639 3.85491 3.97214 4.30447 4.35878 4.55646 4.60494 4.64369 4.76636 4.88733 5.04972 5.15281 5.17318 5.21789 5.38325 5.39025 5.53988 5.59760 5.83870 5.99008 6.05464 6.18153 6.27631 6.60184 7.21717 7.28071 7.43684 7.47339 7.58849 7.90268 8.47973 8.68391 8.93050 9.37841 10.88978 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.041599 B = 0.002860 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.928048 B = 9788.870072 C =10436.048134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.353 6.353 4 C 0.512 3.488 5 O -0.507 6.507 6 C -0.118 4.118 7 C -0.070 4.070 8 C -0.080 4.080 9 C -0.081 4.081 10 C 0.533 3.467 11 O -0.545 6.545 12 N -0.701 5.701 13 C 0.248 3.752 14 C -0.546 4.546 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.884 5.884 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.102 4.102 23 C -0.061 4.061 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.391 0.609 32 H 0.031 0.969 33 H 0.031 0.969 34 H 0.267 0.733 35 H 0.140 0.860 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.718 -19.627 -0.003 23.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.270 6.270 4 C 0.357 3.643 5 O -0.396 6.396 6 C -0.120 4.120 7 C -0.088 4.088 8 C -0.099 4.099 9 C -0.085 4.085 10 C 0.318 3.682 11 O -0.425 6.425 12 N -0.349 5.349 13 C 0.128 3.872 14 C -0.584 4.584 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.521 5.521 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.120 4.120 23 C -0.079 4.079 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.160 0.840 30 H 0.163 0.837 31 H 0.226 0.774 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.158 0.842 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.976 -19.004 0.003 23.590 hybrid contribution 1.376 -0.507 -0.009 1.466 sum -12.600 -19.511 -0.005 23.226 Atomic orbital electron populations 1.21817 0.92434 1.03058 1.03713 1.23059 0.95450 0.79865 1.02749 1.86544 1.23770 1.32544 1.84165 1.21250 0.80586 0.89874 0.72570 1.90824 1.60411 1.42457 1.45877 1.19201 0.94154 0.89852 1.08745 1.21414 1.00340 0.91149 0.95889 1.21318 0.94304 0.97518 0.96781 1.20655 0.94571 0.94309 0.98916 1.18277 0.83523 0.87766 0.78619 1.90741 1.59332 1.41478 1.50941 1.46479 1.05109 1.12287 1.70983 1.19205 0.93076 0.76881 0.98081 1.21197 0.90394 0.93227 1.53574 0.91817 1.24951 0.99390 0.95044 0.94585 1.69966 1.36019 0.97517 1.48645 0.86396 0.84346 0.77806 0.78264 1.20414 1.20969 1.19709 1.21383 1.00520 0.91256 0.98876 1.21176 0.93212 0.97883 0.95601 0.91340 0.91334 0.90151 0.91088 0.91088 0.84006 0.83652 0.77448 0.95134 0.95132 0.92360 0.84184 0.84035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.29 37.16 0.38 -0.41 16 2 C 0.06 0.48 6.19 37.16 0.23 0.71 16 3 O -0.35 -3.62 9.46 -40.48 -0.38 -4.01 16 4 C 0.51 6.17 7.90 34.70 0.27 6.45 16 5 O -0.51 -7.12 16.12 -19.22 -0.31 -7.43 16 6 C -0.12 -1.40 5.88 -104.91 -0.62 -2.02 16 7 C -0.07 -0.78 9.60 -39.23 -0.38 -1.16 16 8 C -0.08 -1.07 9.58 -39.25 -0.38 -1.45 16 9 C -0.08 -1.23 5.88 -104.89 -0.62 -1.85 16 10 C 0.53 10.59 7.78 -12.23 -0.10 10.49 16 11 O -0.55 -12.83 16.33 5.35 0.09 -12.74 16 12 N -0.70 -14.44 5.50 -62.36 -0.34 -14.79 16 13 C 0.25 6.43 5.43 -5.19 -0.03 6.40 16 14 C -0.55 -14.49 9.28 -34.44 -0.32 -14.81 16 15 H 0.06 1.57 7.60 -52.49 -0.40 1.18 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.88 -25.64 13.29 55.43 0.74 -24.90 16 18 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 22 C -0.10 -1.29 9.53 -39.25 -0.37 -1.66 16 23 C -0.06 -0.71 9.58 -39.23 -0.38 -1.09 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.27 8.14 -51.92 -0.42 -0.15 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.14 1.26 7.60 -52.49 -0.40 0.87 16 30 H 0.15 1.91 7.64 -52.49 -0.40 1.51 16 31 H 0.39 6.82 6.34 -40.82 -0.26 6.56 16 32 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.14 1.55 6.39 -52.49 -0.34 1.22 16 36 H 0.14 1.50 7.64 -52.49 -0.40 1.10 16 LS Contribution 322.43 15.07 4.86 4.86 Total: -1.00 -32.48 322.43 -7.05 -39.53 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.29 Total: 2.68 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.39 Total: 1.26 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.39 Total: -39.69 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.61 Total: -24.17 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.48 -7.05 -39.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356055419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.199 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds