Wall clock time and date at job start Mon Mar 30 2020 01:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45197 * 109.46904 * 2 1 4 4 C 1.34694 * 117.00167 * 180.02562 * 3 2 1 5 5 O 1.21442 * 119.99970 * 359.97438 * 4 3 2 6 6 C 1.47922 * 119.99998 * 179.97438 * 4 3 2 7 7 C 1.39608 * 120.00884 * 0.27445 * 6 4 3 8 8 C 1.37808 * 119.99696 * 180.21094 * 7 6 4 9 9 C 1.39556 * 120.00467 * 359.50803 * 8 7 6 10 10 C 1.48049 * 119.99456 * 180.27748 * 9 8 7 11 11 O 1.21523 * 119.99984 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99747 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99563 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.46582 * 179.97438 * 13 12 10 15 15 H 1.07996 * 120.00132 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99378 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00591 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99780 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46983 * 89.99580 * 18 16 14 20 20 H 1.48493 * 109.47172 * 209.99808 * 18 16 14 21 21 H 1.48502 * 109.47185 * 330.00103 * 18 16 14 22 22 C 1.39554 * 120.01062 * 0.26477 * 9 8 7 23 23 C 1.37810 * 120.00864 * 359.96568 * 22 9 8 24 24 H 1.09000 * 109.47355 * 299.99705 * 1 2 3 25 25 H 1.09000 * 109.47551 * 60.00472 * 1 2 3 26 26 H 1.09009 * 109.47010 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47355 * 240.00295 * 2 1 3 28 28 H 1.09000 * 109.47551 * 119.99528 * 2 1 3 29 29 H 1.07998 * 119.99774 * 0.02562 * 7 6 4 30 30 H 1.08002 * 120.00047 * 179.79412 * 8 7 6 31 31 H 0.97000 * 120.00335 * 359.97438 * 12 10 9 32 32 H 1.09000 * 109.46609 * 299.99047 * 13 12 10 33 33 H 1.08996 * 109.47158 * 59.99632 * 13 12 10 34 34 H 0.96997 * 120.00494 * 180.02562 * 17 16 14 35 35 H 1.07998 * 119.99707 * 179.97438 * 22 9 8 36 36 H 1.08001 * 120.00857 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3492 1.5455 -0.0005 5 8 4.0890 0.5825 -0.0005 6 6 3.9145 2.9125 -0.0011 7 6 3.0642 4.0197 0.0046 8 6 3.5911 5.2931 -0.0003 9 6 4.9746 5.4759 -0.0007 10 6 5.5404 6.8440 0.0001 11 8 4.8001 7.8077 0.0017 12 7 6.8766 7.0206 -0.0008 13 6 7.4364 8.3745 0.0006 14 6 8.9414 8.2956 -0.0002 15 1 9.4317 7.3333 -0.0012 16 6 9.6922 9.4520 0.0015 17 7 9.0951 10.6238 0.0032 18 14 11.5577 9.3544 0.0012 19 1 12.0519 9.3304 -1.3990 20 1 12.1154 10.5383 0.7028 21 1 11.9887 8.1166 0.6994 22 6 5.8249 4.3693 -0.0017 23 6 5.2985 3.0956 -0.0016 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.9935 3.8782 0.0100 30 1 2.9333 6.1497 0.0008 31 1 7.4675 6.2514 -0.0017 32 1 7.0997 8.9077 -0.8884 33 1 7.1012 8.9053 0.8916 34 1 9.6233 11.4373 0.0040 35 1 6.8955 4.5110 -0.0025 36 1 5.9565 2.2392 -0.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356055419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:05 Heat of formation + Delta-G solvation = -127.416736 kcal Electronic energy + Delta-G solvation = -19924.546377 eV Core-core repulsion = 16565.569736 eV Total energy + Delta-G solvation = -3358.976640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.78170 -40.99068 -39.20914 -37.68002 -36.27319 -34.50834 -33.18713 -32.22025 -32.07947 -29.39851 -26.62131 -24.72992 -24.16329 -23.36080 -22.45080 -21.39170 -19.67330 -19.10979 -18.18460 -17.68446 -17.62791 -17.18132 -16.46564 -16.24659 -15.81359 -15.63249 -15.20736 -15.09548 -14.74491 -14.40298 -14.18148 -13.99276 -13.63783 -13.55475 -13.52655 -12.93828 -12.91835 -12.71796 -12.53620 -12.23911 -12.20194 -11.75249 -11.54092 -11.50112 -11.02284 -10.81848 -10.32499 -10.15832 -9.86993 -8.29563 -6.46164 -0.79235 0.23043 1.11144 1.44343 1.46370 1.51025 1.57509 1.94207 2.24560 2.46370 2.74793 3.05775 3.45121 3.70645 3.73570 3.83693 4.03295 4.07878 4.15412 4.25407 4.36400 4.55181 4.78233 4.89134 4.95262 4.99404 5.07477 5.10771 5.15298 5.21647 5.26042 5.39206 5.41211 5.58254 5.65562 5.82136 6.57703 6.62511 6.77581 7.19587 7.34483 8.82502 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.041599 B = 0.002860 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.928048 B = 9788.870072 C =10436.048134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.353 6.353 4 C 0.516 3.484 5 O -0.528 6.528 6 C -0.115 4.115 7 C -0.055 4.055 8 C -0.082 4.082 9 C -0.101 4.101 10 C 0.534 3.466 11 O -0.590 6.590 12 N -0.697 5.697 13 C 0.264 3.736 14 C -0.557 4.557 15 H 0.085 0.915 16 C 0.005 3.995 17 N -0.929 5.929 18 Si 0.984 3.016 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.255 1.255 22 C -0.092 4.092 23 C -0.057 4.057 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.169 0.831 30 H 0.142 0.858 31 H 0.409 0.591 32 H -0.007 1.007 33 H -0.007 1.007 34 H 0.269 0.731 35 H 0.156 0.844 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.414 -22.414 0.003 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 O -0.269 6.269 4 C 0.362 3.638 5 O -0.419 6.419 6 C -0.116 4.116 7 C -0.073 4.073 8 C -0.101 4.101 9 C -0.105 4.105 10 C 0.322 3.678 11 O -0.473 6.473 12 N -0.346 5.346 13 C 0.142 3.858 14 C -0.595 4.595 15 H 0.103 0.897 16 C -0.195 4.195 17 N -0.568 5.568 18 Si 0.808 3.192 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.179 1.179 22 C -0.110 4.110 23 C -0.075 4.075 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.119 0.881 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.186 0.814 30 H 0.160 0.840 31 H 0.246 0.754 32 H 0.011 0.989 33 H 0.011 0.989 34 H 0.078 0.922 35 H 0.173 0.827 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.690 -21.848 0.010 25.783 hybrid contribution 1.123 0.256 -0.012 1.152 sum -12.567 -21.592 -0.002 24.983 Atomic orbital electron populations 1.21842 0.90346 1.04469 1.03817 1.23370 0.97066 0.78578 1.02930 1.86543 1.22588 1.34232 1.83546 1.21199 0.81103 0.89451 0.72043 1.90820 1.61050 1.43044 1.46985 1.19390 0.94439 0.90179 1.07638 1.21563 1.01583 0.89753 0.94366 1.21357 0.93493 0.98477 0.96743 1.20268 0.95626 0.91910 1.02647 1.18969 0.82720 0.89428 0.76693 1.90708 1.60203 1.43649 1.52740 1.46171 1.06001 1.10866 1.71564 1.18652 0.93569 0.78984 0.94625 1.21597 0.90484 0.94302 1.53081 0.89667 1.26049 1.05148 0.94496 0.93837 1.70126 1.38322 0.98513 1.49807 0.85159 0.77238 0.78266 0.78583 1.19631 1.21024 1.17892 1.21463 1.00983 0.90734 0.97864 1.21328 0.93540 0.97780 0.94807 0.91217 0.91213 0.88099 0.90952 0.90951 0.81370 0.84017 0.75386 0.98881 0.98873 0.92203 0.82682 0.82439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.29 71.98 0.74 -0.40 16 2 C 0.05 0.71 6.19 71.98 0.45 1.15 16 3 O -0.35 -6.36 9.46 -56.04 -0.53 -6.89 16 4 C 0.52 11.22 7.90 70.39 0.56 11.78 16 5 O -0.53 -13.73 16.12 20.02 0.32 -13.40 16 6 C -0.12 -2.45 5.88 -20.05 -0.12 -2.57 16 7 C -0.05 -1.10 9.60 22.50 0.22 -0.89 16 8 C -0.08 -2.10 9.58 22.49 0.22 -1.89 16 9 C -0.10 -3.03 5.88 -20.04 -0.12 -3.14 16 10 C 0.53 21.80 7.78 86.85 0.68 22.48 16 11 O -0.59 -29.18 16.33 -3.79 -0.06 -29.24 16 12 N -0.70 -29.34 5.50 -469.50 -2.58 -31.92 16 13 C 0.26 14.32 5.43 85.63 0.46 14.78 16 14 C -0.56 -29.79 9.28 25.60 0.24 -29.55 16 15 H 0.09 4.09 7.60 -2.91 -0.02 4.06 16 16 C 0.00 0.25 5.46 84.66 0.46 0.71 16 17 N -0.93 -55.40 13.29 21.45 0.28 -55.12 16 18 Si 0.98 41.78 29.54 68.60 2.03 43.80 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 22 C -0.09 -2.16 9.53 22.49 0.21 -1.95 16 23 C -0.06 -1.19 9.58 22.50 0.22 -0.98 16 24 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.10 0.38 8.14 -2.38 -0.02 0.37 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.17 2.48 7.60 -2.91 -0.02 2.46 16 30 H 0.14 3.74 7.64 -2.91 -0.02 3.71 16 31 H 0.41 14.02 6.34 -92.71 -0.59 13.44 16 32 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 33 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.16 3.10 6.39 -2.91 -0.02 3.08 16 36 H 0.16 2.87 7.64 -2.91 -0.02 2.84 16 Total: -1.00 -72.29 322.43 4.19 -68.11 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.52 Total: 15.12 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 4.21 Total: 9.55 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -2.30 Total: -87.04 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -0.27 Total: -49.54 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -72.29 4.19 -68.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356055419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.310 kcal (2) G-P(sol) polarization free energy of solvation -72.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds