Wall clock time and date at job start Mon Mar 30 2020 01:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47163 * 2 1 4 4 C 1.35955 * 117.00016 * 180.02562 * 3 2 1 5 5 C 1.38075 * 120.00126 * 359.97102 * 4 3 2 6 6 C 1.39977 * 119.83810 * 180.02562 * 5 4 3 7 7 C 1.46965 * 120.07598 * 180.02562 * 6 5 4 8 8 C 1.35029 * 120.00164 * 226.50980 * 7 6 5 9 9 C 1.46251 * 119.99459 * 10.73499 * 8 7 6 10 10 N 1.34783 * 119.99779 * 186.99336 * 9 8 7 11 11 O 1.21720 * 120.00530 * 6.99969 * 9 8 7 12 12 C 1.40027 * 119.84504 * 359.97438 * 6 5 4 13 13 C 1.37653 * 119.99725 * 0.02562 * 12 6 5 14 14 C 1.39050 * 120.16484 * 359.97438 * 13 12 6 15 15 O 1.35609 * 119.92724 * 179.97438 * 14 13 12 16 16 C 1.34772 * 116.99447 * 354.17405 * 15 14 13 17 17 H 1.08001 * 119.99845 * 5.05470 * 16 15 14 18 18 C 1.38708 * 119.99716 * 185.05363 * 16 15 14 19 19 N 1.31519 * 120.00000 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 119.99753 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47056 * 90.00427 * 20 18 16 22 22 H 1.48503 * 109.47466 * 210.00108 * 20 18 16 23 23 H 1.48507 * 109.47257 * 330.00393 * 20 18 16 24 24 H 1.09006 * 109.46900 * 299.99946 * 1 2 3 25 25 H 1.08994 * 109.47125 * 59.99802 * 1 2 3 26 26 H 1.09003 * 109.47160 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46965 * 239.99610 * 2 1 3 28 28 H 1.09007 * 109.47381 * 119.99984 * 2 1 3 29 29 H 1.07992 * 120.08115 * 0.05242 * 5 4 3 30 30 H 1.08003 * 120.00127 * 46.51799 * 7 6 5 31 31 H 1.07997 * 119.99958 * 190.73542 * 8 7 6 32 32 H 0.96998 * 119.99959 * 0.02562 * 10 9 8 33 33 H 0.97002 * 120.00087 * 180.02562 * 10 9 8 34 34 H 1.08002 * 120.00392 * 180.02562 * 12 6 5 35 35 H 1.08001 * 119.91333 * 180.27752 * 13 12 6 36 36 H 0.97001 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5254 -0.0005 5 6 4.1953 0.4304 -0.0005 6 6 5.5824 0.6177 -0.0005 7 6 6.4826 -0.5440 -0.0009 8 6 7.5323 -0.5851 0.8473 9 6 7.6439 0.4018 1.9209 10 7 8.7576 0.4502 2.6786 11 8 6.7311 1.1793 2.1302 12 6 6.1105 1.9146 -0.0011 13 6 5.2658 3.0016 -0.0012 14 6 3.8878 2.8157 -0.0012 15 8 3.0602 3.8899 -0.0007 16 6 3.6332 5.1036 0.1216 17 1 4.7094 5.1941 0.1313 18 6 2.8408 6.2364 0.2349 19 7 1.5303 6.1260 0.2235 20 14 3.6351 7.9184 0.4051 21 1 3.8468 8.5045 -0.9428 22 1 2.7474 8.8072 1.1974 23 1 4.9424 7.7810 1.0961 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.7839 -0.5681 -0.0008 30 1 6.3045 -1.3649 -0.6799 31 1 8.2894 -1.3468 0.7330 32 1 9.4851 -0.1692 2.5116 33 1 8.8315 1.1045 3.3908 34 1 7.1804 2.0622 -0.0016 35 1 5.6746 4.0013 -0.0062 36 1 0.9762 6.9182 0.3031 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361633768.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:35 Heat of formation + Delta-G solvation = -50.030335 kcal Electronic energy + Delta-G solvation = -21185.543711 eV Core-core repulsion = 17829.922797 eV Total energy + Delta-G solvation = -3355.620914 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.72459 -38.97031 -37.52331 -36.12565 -33.35690 -32.92885 -32.02685 -31.20676 -29.23815 -27.79785 -25.34902 -23.65164 -23.19598 -21.21072 -20.91962 -19.18132 -17.91755 -17.74103 -16.82243 -16.37349 -15.98651 -15.46611 -14.95497 -14.60923 -14.20275 -14.03016 -13.64923 -13.56250 -13.37200 -13.09195 -12.62740 -12.27012 -12.24816 -12.09859 -11.62645 -11.23565 -11.18210 -10.99508 -10.81825 -10.50173 -10.32614 -10.20496 -9.53120 -9.41127 -9.29091 -9.12693 -8.64351 -7.69290 -6.61287 -6.38747 -3.91356 1.24362 2.37017 2.67638 3.17266 3.18793 3.23510 3.66625 3.85314 4.00874 4.01556 4.66247 5.10652 5.17780 5.19167 5.26634 5.33458 5.44386 5.59285 5.60418 5.79652 5.83401 5.91424 6.16635 6.21841 6.31891 6.40734 6.49170 6.61186 6.74924 6.98590 7.07592 7.20085 7.33445 7.47969 7.60208 7.75380 8.03165 8.33806 8.62009 9.05594 9.78481 10.78376 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.006345 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.624597 B = 4412.104759 C = 6252.265343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.303 6.303 4 C 0.044 3.956 5 C -0.137 4.137 6 C -0.155 4.155 7 C 0.024 3.976 8 C -0.262 4.262 9 C 0.538 3.462 10 N -0.864 5.864 11 O -0.514 6.514 12 C -0.015 4.015 13 C -0.221 4.221 14 C 0.151 3.849 15 O -0.158 6.158 16 C -0.388 4.388 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.854 5.854 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.394 0.606 33 H 0.397 0.603 34 H 0.099 0.901 35 H 0.131 0.869 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.918 -13.547 0.472 16.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.218 6.218 4 C 0.000 4.000 5 C -0.157 4.157 6 C -0.156 4.156 7 C 0.004 3.996 8 C -0.284 4.284 9 C 0.326 3.674 10 N -0.428 5.428 11 O -0.390 6.390 12 C -0.034 4.034 13 C -0.240 4.240 14 C 0.096 3.904 15 O -0.061 6.061 16 C -0.464 4.464 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.488 5.488 20 Si 0.766 3.234 21 H -0.199 1.199 22 H -0.202 1.202 23 H -0.191 1.191 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.134 0.866 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.222 0.778 33 H 0.227 0.773 34 H 0.117 0.883 35 H 0.149 0.851 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.583 -12.769 0.463 15.392 hybrid contribution 1.148 0.412 0.431 1.293 sum 9.731 -12.357 0.894 15.754 Atomic orbital electron populations 1.21725 0.93565 1.01703 1.03674 1.22559 0.95377 0.83791 1.00129 1.86219 1.18882 1.26644 1.90006 1.17884 0.82215 0.91344 1.08589 1.20644 0.92685 0.96188 1.06157 1.18026 0.91815 0.92304 1.13473 1.22320 0.90660 0.94308 0.92310 1.22660 1.02618 1.03378 0.99700 1.18507 0.82080 0.84034 0.82792 1.43898 1.19875 1.40532 1.38449 1.91060 1.37741 1.40613 1.69541 1.20484 0.97479 0.90990 0.94410 1.20724 0.91742 0.99457 1.12094 1.18794 0.89464 0.86345 0.95831 1.83992 1.32843 1.12274 1.76968 1.21425 0.92869 0.80634 1.51487 0.88951 1.25316 0.95374 0.99304 0.96580 1.70057 1.03426 1.30308 1.45050 0.85714 0.78844 0.80245 0.78647 1.19856 1.20240 1.19129 0.91610 0.91623 0.91273 0.93132 0.93138 0.86592 0.86012 0.86058 0.77834 0.77309 0.88268 0.85111 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.28 37.16 0.38 -1.75 16 2 C 0.06 0.96 5.46 37.16 0.20 1.16 16 3 O -0.30 -7.04 9.92 -34.21 -0.34 -7.38 16 4 C 0.04 1.05 6.70 -39.12 -0.26 0.79 16 5 C -0.14 -2.73 8.77 -38.99 -0.34 -3.07 16 6 C -0.15 -2.93 4.42 -105.04 -0.46 -3.40 16 7 C 0.02 0.33 9.78 -37.19 -0.36 -0.03 16 8 C -0.26 -3.29 9.92 -37.50 -0.37 -3.66 16 9 C 0.54 7.99 7.15 -13.04 -0.09 7.90 16 10 N -0.86 -8.70 8.87 30.16 0.27 -8.43 16 11 O -0.51 -10.42 13.17 5.17 0.07 -10.35 16 12 C -0.01 -0.31 6.68 -39.12 -0.26 -0.57 16 13 C -0.22 -5.27 9.14 -39.49 -0.36 -5.63 16 14 C 0.15 4.00 6.67 -38.76 -0.26 3.74 16 15 O -0.16 -4.84 9.52 -13.97 -0.13 -4.97 16 16 C -0.39 -11.38 9.48 30.91 0.29 -11.09 16 17 H 0.09 2.51 5.19 -52.49 -0.27 2.24 16 18 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 19 N -0.85 -25.93 13.67 55.48 0.76 -25.17 16 20 Si 0.94 21.21 29.55 -169.99 -5.02 16.19 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.75 7.66 -51.93 -0.40 0.35 16 28 H 0.05 0.78 7.66 -51.93 -0.40 0.38 16 29 H 0.12 1.91 6.28 -52.49 -0.33 1.58 16 30 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 32 H 0.39 2.52 8.81 -40.82 -0.36 2.16 16 33 H 0.40 3.79 8.93 -40.82 -0.36 3.42 16 34 H 0.10 1.87 7.28 -52.49 -0.38 1.49 16 35 H 0.13 3.09 5.62 -52.49 -0.29 2.80 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 312.24 15.07 4.71 4.71 Total: -1.00 -36.42 312.24 -5.74 -42.16 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -4.05 Total: 7.83 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -2.00 Total: -14.58 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 1.03 Total: -33.61 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.40 Total: -22.71 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -36.42 -5.74 -42.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361633768.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.866 kcal (2) G-P(sol) polarization free energy of solvation -36.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds