Wall clock time and date at job start Mon Mar 30 2020 01:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47163 * 2 1 4 4 C 1.35955 * 117.00016 * 180.02562 * 3 2 1 5 5 C 1.38075 * 120.00126 * 359.97102 * 4 3 2 6 6 C 1.39977 * 119.83810 * 180.02562 * 5 4 3 7 7 C 1.46965 * 120.07598 * 180.02562 * 6 5 4 8 8 C 1.35029 * 120.00164 * 226.50980 * 7 6 5 9 9 C 1.46251 * 119.99459 * 10.73499 * 8 7 6 10 10 N 1.34783 * 119.99779 * 186.99336 * 9 8 7 11 11 O 1.21720 * 120.00530 * 6.99969 * 9 8 7 12 12 C 1.40027 * 119.84504 * 359.97438 * 6 5 4 13 13 C 1.37653 * 119.99725 * 0.02562 * 12 6 5 14 14 C 1.39050 * 120.16484 * 359.97438 * 13 12 6 15 15 O 1.35609 * 119.92724 * 179.97438 * 14 13 12 16 16 C 1.34772 * 116.99447 * 354.17405 * 15 14 13 17 17 H 1.08001 * 119.99845 * 5.05470 * 16 15 14 18 18 C 1.38708 * 119.99716 * 185.05363 * 16 15 14 19 19 N 1.31519 * 120.00000 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 119.99753 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47056 * 90.00427 * 20 18 16 22 22 H 1.48503 * 109.47466 * 210.00108 * 20 18 16 23 23 H 1.48507 * 109.47257 * 330.00393 * 20 18 16 24 24 H 1.09006 * 109.46900 * 299.99946 * 1 2 3 25 25 H 1.08994 * 109.47125 * 59.99802 * 1 2 3 26 26 H 1.09003 * 109.47160 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46965 * 239.99610 * 2 1 3 28 28 H 1.09007 * 109.47381 * 119.99984 * 2 1 3 29 29 H 1.07992 * 120.08115 * 0.05242 * 5 4 3 30 30 H 1.08003 * 120.00127 * 46.51799 * 7 6 5 31 31 H 1.07997 * 119.99958 * 190.73542 * 8 7 6 32 32 H 0.96998 * 119.99959 * 0.02562 * 10 9 8 33 33 H 0.97002 * 120.00087 * 180.02562 * 10 9 8 34 34 H 1.08002 * 120.00392 * 180.02562 * 12 6 5 35 35 H 1.08001 * 119.91333 * 180.27752 * 13 12 6 36 36 H 0.97001 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5254 -0.0005 5 6 4.1953 0.4304 -0.0005 6 6 5.5824 0.6177 -0.0005 7 6 6.4826 -0.5440 -0.0009 8 6 7.5323 -0.5851 0.8473 9 6 7.6439 0.4018 1.9209 10 7 8.7576 0.4502 2.6786 11 8 6.7311 1.1793 2.1302 12 6 6.1105 1.9146 -0.0011 13 6 5.2658 3.0016 -0.0012 14 6 3.8878 2.8157 -0.0012 15 8 3.0602 3.8899 -0.0007 16 6 3.6332 5.1036 0.1216 17 1 4.7094 5.1941 0.1313 18 6 2.8408 6.2364 0.2349 19 7 1.5303 6.1260 0.2235 20 14 3.6351 7.9184 0.4051 21 1 3.8468 8.5045 -0.9428 22 1 2.7474 8.8072 1.1974 23 1 4.9424 7.7810 1.0961 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.7839 -0.5681 -0.0008 30 1 6.3045 -1.3649 -0.6799 31 1 8.2894 -1.3468 0.7330 32 1 9.4851 -0.1692 2.5116 33 1 8.8315 1.1045 3.3908 34 1 7.1804 2.0622 -0.0016 35 1 5.6746 4.0013 -0.0062 36 1 0.9762 6.9182 0.3031 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361633768.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:34 Heat of formation + Delta-G solvation = -78.895730 kcal Electronic energy + Delta-G solvation = -21186.795409 eV Core-core repulsion = 17829.922797 eV Total energy + Delta-G solvation = -3356.872612 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.32623 -40.34299 -39.31613 -37.74605 -34.55786 -34.48147 -33.77822 -32.54639 -30.88490 -29.42066 -27.33050 -25.02624 -24.62247 -22.69624 -22.54598 -20.42689 -19.83231 -19.32752 -18.10326 -17.79464 -17.31556 -16.95295 -16.69465 -16.35699 -15.71137 -15.48426 -15.37260 -15.06633 -14.87143 -14.53778 -13.93202 -13.87392 -13.75445 -13.49076 -13.31655 -12.85517 -12.71474 -12.67187 -12.36810 -12.16894 -11.85321 -11.60083 -11.34041 -10.89091 -10.70499 -10.45390 -10.27844 -9.36758 -8.45979 -8.35705 -6.09648 -0.01123 0.65431 1.08661 1.31726 1.43632 1.50737 2.17585 2.50672 2.52503 2.85610 2.90208 3.16546 3.47363 3.91160 4.07982 4.09128 4.21236 4.25492 4.29226 4.38176 4.58324 4.60875 4.67259 4.88825 4.94977 5.00708 5.12252 5.14969 5.24407 5.37967 5.53104 5.59775 5.81515 5.97757 6.04365 6.09255 6.69706 6.72330 6.98027 7.58218 7.82623 8.77968 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.006345 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.624597 B = 4412.104759 C = 6252.265343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 O -0.344 6.344 4 C 0.032 3.968 5 C -0.139 4.139 6 C -0.118 4.118 7 C -0.004 4.004 8 C -0.222 4.222 9 C 0.523 3.477 10 N -0.838 5.838 11 O -0.579 6.579 12 C -0.027 4.027 13 C -0.224 4.224 14 C 0.092 3.908 15 O -0.220 6.220 16 C -0.415 4.415 17 H 0.097 0.903 18 C -0.024 4.024 19 N -0.918 5.918 20 Si 1.021 2.979 21 H -0.259 1.259 22 H -0.268 1.268 23 H -0.256 1.256 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.114 0.886 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.158 0.842 30 H 0.172 0.828 31 H 0.179 0.821 32 H 0.417 0.583 33 H 0.402 0.598 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.485 -17.412 0.523 22.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 O -0.260 6.260 4 C -0.013 4.013 5 C -0.158 4.158 6 C -0.119 4.119 7 C -0.023 4.023 8 C -0.243 4.243 9 C 0.311 3.689 10 N -0.402 5.402 11 O -0.460 6.460 12 C -0.046 4.046 13 C -0.243 4.243 14 C 0.042 3.958 15 O -0.127 6.127 16 C -0.491 4.491 17 H 0.115 0.885 18 C -0.222 4.222 19 N -0.556 5.556 20 Si 0.839 3.161 21 H -0.183 1.183 22 H -0.193 1.193 23 H -0.180 1.180 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.132 0.868 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.175 0.825 30 H 0.189 0.811 31 H 0.196 0.804 32 H 0.248 0.752 33 H 0.232 0.768 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.259 -16.737 0.521 20.753 hybrid contribution 0.403 1.056 0.521 1.244 sum 12.662 -15.681 1.042 20.181 Atomic orbital electron populations 1.21790 0.92043 1.04132 1.02363 1.23012 0.96723 0.81340 1.01881 1.86185 1.18944 1.30783 1.90106 1.18273 0.83244 0.91464 1.08341 1.21130 0.92862 0.96783 1.04976 1.18699 0.92459 0.93653 1.07065 1.22588 0.90309 0.94027 0.95353 1.23170 1.01899 1.02370 0.96832 1.19157 0.82204 0.83865 0.83672 1.43715 1.19118 1.40273 1.37090 1.91072 1.40312 1.43288 1.71324 1.20701 0.97959 0.91077 0.94824 1.20832 0.91490 1.00217 1.11786 1.19445 0.90552 0.86966 0.98866 1.83957 1.34389 1.13184 1.81176 1.21863 0.93400 0.81412 1.52472 0.88549 1.26645 0.95943 1.03653 0.95914 1.70213 1.05313 1.31612 1.48460 0.84578 0.78018 0.74147 0.79325 1.18322 1.19285 1.18001 0.93210 0.92724 0.86804 0.90656 0.91628 0.82496 0.81068 0.80374 0.75150 0.76831 0.86309 0.86446 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 10.28 71.98 0.74 -3.36 16 2 C 0.04 1.47 5.46 71.98 0.39 1.87 16 3 O -0.34 -16.82 9.92 -79.06 -0.78 -17.60 16 4 C 0.03 1.56 6.70 22.57 0.15 1.71 16 5 C -0.14 -5.29 8.77 22.65 0.20 -5.09 16 6 C -0.12 -4.15 4.42 -20.14 -0.09 -4.24 16 7 C 0.00 -0.08 9.78 23.82 0.23 0.16 16 8 C -0.22 -4.09 9.92 23.61 0.23 -3.85 16 9 C 0.52 13.36 7.15 86.32 0.62 13.98 16 10 N -0.84 -13.14 8.87 -176.68 -1.57 -14.70 16 11 O -0.58 -22.55 13.17 -4.41 -0.06 -22.61 16 12 C -0.03 -1.11 6.68 22.57 0.15 -0.96 16 13 C -0.22 -11.32 9.14 22.33 0.20 -11.11 16 14 C 0.09 5.28 6.67 22.80 0.15 5.43 16 15 O -0.22 -14.81 9.52 -6.63 -0.06 -14.88 16 16 C -0.42 -26.54 9.48 67.93 0.64 -25.90 16 17 H 0.10 5.73 5.19 -2.91 -0.02 5.71 16 18 C -0.02 -1.48 5.49 84.85 0.47 -1.02 16 19 N -0.92 -60.25 13.67 21.62 0.30 -59.95 16 20 Si 1.02 46.05 29.55 68.60 2.03 48.08 16 21 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 24 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.11 2.13 8.14 -2.39 -0.02 2.12 16 27 H 0.08 2.06 7.66 -2.39 -0.02 2.04 16 28 H 0.07 1.91 7.66 -2.38 -0.02 1.90 16 29 H 0.16 4.57 6.28 -2.91 -0.02 4.55 16 30 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.18 1.40 8.06 -2.91 -0.02 1.37 16 32 H 0.42 2.90 8.81 -92.71 -0.82 2.09 16 33 H 0.40 6.33 8.93 -92.71 -0.83 5.50 16 34 H 0.12 4.29 7.28 -2.91 -0.02 4.27 16 35 H 0.12 6.03 5.62 -2.91 -0.02 6.02 16 36 H 0.27 16.25 8.31 -92.71 -0.77 15.48 16 Total: -1.00 -92.26 312.24 3.44 -88.82 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.51 Total: 25.24 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 4.10 Total: -32.39 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -1.27 Total: -74.65 kcal Atomic # 8 Polarization: -54.19 SS G_CDS: -0.91 Total: -55.09 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -92.26 3.44 -88.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361633768.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.922 kcal (2) G-P(sol) polarization free energy of solvation -92.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds