Wall clock time and date at job start Mon Mar 30 2020 02:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35897 * 117.00200 * 2 1 4 4 C 1.38801 * 120.07907 * 0.02562 * 3 2 1 5 5 C 1.38001 * 119.92790 * 179.91004 * 4 3 2 6 6 C 1.38557 * 120.39053 * 0.02562 * 5 4 3 7 7 C 1.38430 * 119.91372 * 0.14594 * 6 5 4 8 8 C 1.38453 * 120.08352 * 179.97438 * 3 2 1 9 9 O 1.35851 * 121.80042 * 179.52769 * 7 6 5 10 10 C 1.42823 * 117.86525 * 17.25174 * 9 7 6 11 11 C 1.53410 * 108.36181 * 310.78507 * 10 9 7 12 12 C 1.50789 * 118.70826 * 180.17494 * 6 5 4 13 13 H 1.08994 * 109.43799 * 77.77446 * 12 6 5 14 14 N 1.46504 * 109.43465 * 317.86330 * 12 6 5 15 15 C 1.34777 * 119.99854 * 84.99902 * 14 12 6 16 16 O 1.21693 * 120.00018 * 0.02562 * 15 14 12 17 17 C 1.46377 * 120.00307 * 180.27510 * 15 14 12 18 18 H 1.08001 * 119.99387 * 359.73219 * 17 15 14 19 19 C 1.40043 * 120.00458 * 179.72666 * 17 15 14 20 20 N 1.30674 * 120.00000 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00093 * 180.02562 * 19 17 15 22 22 H 1.48509 * 109.47059 * 60.00240 * 21 19 17 23 23 H 1.48497 * 109.47169 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47241 * 300.00117 * 21 19 17 25 25 H 1.08999 * 109.47258 * 299.99922 * 1 2 3 26 26 H 1.09000 * 109.47741 * 60.00022 * 1 2 3 27 27 H 1.09006 * 109.46889 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.03539 * 359.93308 * 4 3 2 29 29 H 1.08000 * 119.80196 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.91204 * 359.97438 * 8 3 2 31 31 H 1.09009 * 109.68073 * 70.51741 * 10 9 7 32 32 H 1.09002 * 109.68399 * 191.03294 * 10 9 7 33 33 H 1.09004 * 109.69577 * 305.03795 * 11 10 9 34 34 H 1.09007 * 109.70149 * 184.44564 * 11 10 9 35 35 H 0.97000 * 120.00410 * 265.00627 * 14 12 6 36 36 H 0.97004 * 120.00230 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2916 2.3760 0.0005 5 6 1.9214 3.6039 0.0024 6 6 3.3048 3.6821 0.0032 7 6 4.0618 2.5232 -0.0009 8 6 3.4285 1.2853 0.0005 9 8 5.4199 2.5552 -0.0098 10 6 6.0612 3.7767 0.3597 11 6 5.4140 4.9208 -0.4312 12 6 3.9533 5.0435 0.0093 13 1 3.9124 5.4602 1.0156 14 7 3.2383 5.9281 -0.9140 15 6 2.1409 6.5911 -0.4983 16 8 1.7443 6.4552 0.6441 17 6 1.4230 7.4703 -1.4225 18 1 1.7753 7.5911 -2.4363 19 6 0.2795 8.1547 -0.9923 20 7 -0.1464 8.0088 0.2344 21 14 -0.6370 9.2762 -2.1720 22 1 -1.1085 8.4878 -3.3389 23 1 -1.8037 9.8776 -1.4777 24 1 0.2723 10.3540 -2.6376 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2130 2.3217 -0.0001 29 1 1.3325 4.5092 0.0032 30 1 4.0166 0.3794 0.0014 31 1 5.9331 3.9501 1.4282 32 1 7.1235 3.7202 0.1218 33 1 5.4588 4.7014 -1.4980 34 1 5.9394 5.8534 -0.2251 35 1 3.5546 6.0367 -1.8246 36 1 -0.9387 8.4826 0.5324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364394715.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:26 Heat of formation + Delta-G solvation = -87.533361 kcal Electronic energy + Delta-G solvation = -21625.182335 eV Core-core repulsion = 18267.935167 eV Total energy + Delta-G solvation = -3357.247168 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56662 -39.07671 -37.52107 -35.99081 -34.34964 -32.49302 -30.98307 -30.01833 -29.53206 -27.11304 -26.43441 -24.48913 -22.90731 -22.05746 -20.02869 -19.56282 -18.21827 -17.28067 -16.53908 -16.12123 -15.66986 -15.53891 -15.38096 -15.09379 -14.56736 -14.22624 -13.98603 -13.48052 -13.05599 -12.77279 -12.54917 -12.39332 -12.24087 -11.93917 -11.68094 -11.41350 -11.11475 -11.07469 -10.71233 -10.69596 -10.51749 -10.39890 -10.22290 -10.00808 -8.91288 -8.13141 -7.79649 -7.61744 -7.54477 -6.25932 -4.72041 1.76248 1.84502 3.11465 3.12982 3.17037 3.18511 3.83887 4.03151 4.15389 4.48481 4.70300 4.93849 5.08706 5.13246 5.16462 5.25554 5.34415 5.37149 5.50703 5.56225 5.60087 5.70685 5.78141 5.86583 6.01339 6.08956 6.29102 6.44922 6.58257 6.85482 6.99782 7.12724 7.36776 7.55807 7.76306 7.85644 8.00441 8.25222 8.95345 9.43789 10.50824 10.68500 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.005870 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.520065 B = 4768.798366 C = 6100.561411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.149 3.851 4 C -0.242 4.242 5 C -0.018 4.018 6 C -0.196 4.196 7 C 0.164 3.836 8 C -0.198 4.198 9 O -0.319 6.319 10 C 0.067 3.933 11 C -0.165 4.165 12 C 0.200 3.800 13 H 0.087 0.913 14 N -0.757 5.757 15 C 0.555 3.445 16 O -0.576 6.576 17 C -0.545 4.545 18 H 0.067 0.933 19 C 0.089 3.911 20 N -0.766 5.766 21 Si 0.907 3.093 22 H -0.268 1.268 23 H -0.280 1.280 24 H -0.268 1.268 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.124 0.876 29 H 0.156 0.844 30 H 0.131 0.869 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.382 0.618 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.925 -9.931 -1.654 11.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.104 3.896 4 C -0.261 4.261 5 C -0.036 4.036 6 C -0.199 4.199 7 C 0.118 3.882 8 C -0.217 4.217 9 O -0.233 6.233 10 C -0.009 4.009 11 C -0.203 4.203 12 C 0.094 3.906 13 H 0.105 0.895 14 N -0.411 5.411 15 C 0.360 3.640 16 O -0.460 6.460 17 C -0.582 4.582 18 H 0.085 0.915 19 C -0.131 4.131 20 N -0.394 5.394 21 Si 0.732 3.268 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.193 1.193 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.114 0.886 28 H 0.142 0.858 29 H 0.173 0.827 30 H 0.148 0.852 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.214 0.786 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.696 -10.294 -0.703 11.786 hybrid contribution -0.668 0.963 -1.013 1.549 sum 5.028 -9.331 -1.716 10.737 Atomic orbital electron populations 1.23017 0.78511 1.03347 1.01735 1.85980 1.21267 1.27221 1.88993 1.18531 0.91394 0.83941 0.95737 1.21190 0.99945 0.92196 1.12760 1.21483 0.93967 0.98507 0.89671 1.20462 0.94795 0.94736 1.09905 1.18268 0.81898 0.92469 0.95546 1.19368 0.91240 0.96368 1.14709 1.85906 1.16663 1.36754 1.83956 1.22934 0.96630 0.82285 0.99015 1.22495 0.96830 0.99588 1.01366 1.19202 0.88543 0.86587 0.96289 0.89489 1.46224 1.31951 1.49125 1.13766 1.18217 0.78300 0.79459 0.88060 1.90610 1.67517 1.67417 1.20425 1.20855 1.11217 1.27881 0.98220 0.91451 1.25684 0.96613 0.95783 0.95046 1.69997 1.19639 1.34010 1.15801 0.86445 0.79080 0.80504 0.80819 1.19286 1.20538 1.19262 0.92576 0.92583 0.88605 0.85767 0.82666 0.85154 0.91661 0.87568 0.90366 0.89553 0.78627 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -4.90 10.50 -19.42 -0.20 -5.11 16 3 C 0.15 2.58 6.68 -39.29 -0.26 2.32 16 4 C -0.24 -4.49 9.04 -39.46 -0.36 -4.85 16 5 C -0.02 -0.39 9.07 -39.55 -0.36 -0.75 16 6 C -0.20 -3.86 5.56 -104.39 -0.58 -4.44 16 7 C 0.16 2.92 6.47 -39.21 -0.25 2.67 16 8 C -0.20 -3.40 9.87 -39.20 -0.39 -3.79 16 9 O -0.32 -5.02 10.27 -19.27 -0.20 -5.22 16 10 C 0.07 0.85 7.03 37.37 0.26 1.11 16 11 C -0.16 -2.34 5.67 -26.49 -0.15 -2.49 16 12 C 0.20 3.84 2.70 -69.00 -0.19 3.65 16 13 H 0.09 1.86 7.57 -51.93 -0.39 1.47 16 14 N -0.76 -16.30 4.85 -56.27 -0.27 -16.57 16 15 C 0.55 14.88 6.30 -12.99 -0.08 14.80 16 16 O -0.58 -17.39 12.95 5.20 0.07 -17.32 16 17 C -0.54 -14.79 9.54 -35.63 -0.34 -15.13 16 18 H 0.07 1.69 7.85 -52.49 -0.41 1.27 16 19 C 0.09 2.39 5.50 -17.37 -0.10 2.30 16 20 N -0.77 -22.10 11.83 55.55 0.66 -21.44 16 21 Si 0.91 19.62 29.56 -169.99 -5.02 14.59 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 25 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 26 H 0.06 0.61 7.66 -51.93 -0.40 0.22 16 27 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.12 2.08 6.31 -52.49 -0.33 1.75 16 29 H 0.16 3.91 4.69 -52.49 -0.25 3.67 16 30 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 32 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.38 7.35 8.56 -40.82 -0.35 7.00 16 36 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 LS Contribution 301.85 15.07 4.55 4.55 Total: -1.00 -32.83 301.85 -6.42 -39.25 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -4.20 Total: 10.55 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -1.80 Total: -3.28 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.38 Total: -38.02 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.33 Total: -27.65 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.83 -6.42 -39.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364394715.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.281 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds