Wall clock time and date at job start Mon Mar 30 2020 02:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35897 * 117.00200 * 2 1 4 4 C 1.38801 * 120.07907 * 0.02562 * 3 2 1 5 5 C 1.38001 * 119.92790 * 179.91004 * 4 3 2 6 6 C 1.38557 * 120.39053 * 0.02562 * 5 4 3 7 7 C 1.38430 * 119.91372 * 0.14594 * 6 5 4 8 8 C 1.38453 * 120.08352 * 179.97438 * 3 2 1 9 9 O 1.35851 * 121.80042 * 179.52769 * 7 6 5 10 10 C 1.42823 * 117.86525 * 17.25174 * 9 7 6 11 11 C 1.53410 * 108.36181 * 310.78507 * 10 9 7 12 12 C 1.50789 * 118.70826 * 180.17494 * 6 5 4 13 13 H 1.08994 * 109.43799 * 77.77446 * 12 6 5 14 14 N 1.46504 * 109.43465 * 317.86330 * 12 6 5 15 15 C 1.34777 * 119.99854 * 84.99902 * 14 12 6 16 16 O 1.21693 * 120.00018 * 0.02562 * 15 14 12 17 17 C 1.46377 * 120.00307 * 180.27510 * 15 14 12 18 18 H 1.08001 * 119.99387 * 359.73219 * 17 15 14 19 19 C 1.40043 * 120.00458 * 179.72666 * 17 15 14 20 20 N 1.30674 * 120.00000 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00093 * 180.02562 * 19 17 15 22 22 H 1.48509 * 109.47059 * 60.00240 * 21 19 17 23 23 H 1.48497 * 109.47169 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47241 * 300.00117 * 21 19 17 25 25 H 1.08999 * 109.47258 * 299.99922 * 1 2 3 26 26 H 1.09000 * 109.47741 * 60.00022 * 1 2 3 27 27 H 1.09006 * 109.46889 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.03539 * 359.93308 * 4 3 2 29 29 H 1.08000 * 119.80196 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.91204 * 359.97438 * 8 3 2 31 31 H 1.09009 * 109.68073 * 70.51741 * 10 9 7 32 32 H 1.09002 * 109.68399 * 191.03294 * 10 9 7 33 33 H 1.09004 * 109.69577 * 305.03795 * 11 10 9 34 34 H 1.09007 * 109.70149 * 184.44564 * 11 10 9 35 35 H 0.97000 * 120.00410 * 265.00627 * 14 12 6 36 36 H 0.97004 * 120.00230 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2916 2.3760 0.0005 5 6 1.9214 3.6039 0.0024 6 6 3.3048 3.6821 0.0032 7 6 4.0618 2.5232 -0.0009 8 6 3.4285 1.2853 0.0005 9 8 5.4199 2.5552 -0.0098 10 6 6.0612 3.7767 0.3597 11 6 5.4140 4.9208 -0.4312 12 6 3.9533 5.0435 0.0093 13 1 3.9124 5.4602 1.0156 14 7 3.2383 5.9281 -0.9140 15 6 2.1409 6.5911 -0.4983 16 8 1.7443 6.4552 0.6441 17 6 1.4230 7.4703 -1.4225 18 1 1.7753 7.5911 -2.4363 19 6 0.2795 8.1547 -0.9923 20 7 -0.1464 8.0088 0.2344 21 14 -0.6370 9.2762 -2.1720 22 1 -1.1085 8.4878 -3.3389 23 1 -1.8037 9.8776 -1.4777 24 1 0.2723 10.3540 -2.6376 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2130 2.3217 -0.0001 29 1 1.3325 4.5092 0.0032 30 1 4.0166 0.3794 0.0014 31 1 5.9331 3.9501 1.4282 32 1 7.1235 3.7202 0.1218 33 1 5.4588 4.7014 -1.4980 34 1 5.9394 5.8534 -0.2251 35 1 3.5546 6.0367 -1.8246 36 1 -0.9387 8.4826 0.5324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364394715.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:26 Heat of formation + Delta-G solvation = -111.474071 kcal Electronic energy + Delta-G solvation = -21626.220482 eV Core-core repulsion = 18267.935167 eV Total energy + Delta-G solvation = -3358.285315 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.93621 -40.32844 -39.35921 -37.36088 -36.01824 -34.54909 -32.58680 -31.38880 -30.93287 -28.50862 -28.07464 -25.91901 -24.23582 -23.53726 -21.81744 -21.04316 -19.57983 -19.09701 -17.90161 -17.50378 -17.32282 -16.97144 -16.74997 -16.45254 -16.02773 -15.89032 -15.43045 -15.10953 -14.42068 -14.26595 -14.05958 -13.89821 -13.67772 -13.33276 -13.14310 -12.90196 -12.76455 -12.62911 -12.39863 -12.12342 -12.06972 -11.94185 -11.60616 -11.38962 -10.91975 -9.86120 -9.58449 -9.44871 -9.00919 -8.28889 -6.85512 0.34065 0.36274 1.39222 1.41724 1.53161 1.94091 2.23230 2.46299 2.59359 2.75420 3.14484 3.55290 3.69341 3.77888 3.93295 3.96359 4.09049 4.19518 4.27703 4.35330 4.40569 4.55856 4.61168 4.68236 4.70792 4.81175 4.96498 5.06356 5.18074 5.31238 5.39086 5.45809 5.61898 5.88381 6.21238 6.26667 6.29347 6.44500 6.87124 7.54070 8.49342 8.66902 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.005870 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.520065 B = 4768.798366 C = 6100.561411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.323 6.323 3 C 0.158 3.842 4 C -0.249 4.249 5 C -0.047 4.047 6 C -0.213 4.213 7 C 0.172 3.828 8 C -0.199 4.199 9 O -0.316 6.316 10 C 0.064 3.936 11 C -0.154 4.154 12 C 0.197 3.803 13 H 0.054 0.946 14 N -0.745 5.745 15 C 0.545 3.455 16 O -0.619 6.619 17 C -0.575 4.575 18 H 0.084 0.916 19 C 0.033 3.967 20 N -0.818 5.818 21 Si 0.992 3.008 22 H -0.257 1.257 23 H -0.275 1.275 24 H -0.255 1.255 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.110 0.890 30 H 0.154 0.846 31 H 0.068 0.932 32 H 0.153 0.847 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.394 0.606 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.206 -10.998 -3.197 13.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.236 6.236 3 C 0.112 3.888 4 C -0.267 4.267 5 C -0.065 4.065 6 C -0.216 4.216 7 C 0.126 3.874 8 C -0.218 4.218 9 O -0.230 6.230 10 C -0.010 4.010 11 C -0.192 4.192 12 C 0.091 3.909 13 H 0.072 0.928 14 N -0.398 5.398 15 C 0.350 3.650 16 O -0.506 6.506 17 C -0.611 4.611 18 H 0.102 0.898 19 C -0.182 4.182 20 N -0.447 5.447 21 Si 0.812 3.188 22 H -0.182 1.182 23 H -0.199 1.199 24 H -0.179 1.179 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.128 0.872 30 H 0.171 0.829 31 H 0.087 0.913 32 H 0.171 0.829 33 H 0.106 0.894 34 H 0.124 0.876 35 H 0.228 0.772 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.025 -11.386 -2.271 13.570 hybrid contribution -1.040 1.180 -0.492 1.647 sum 5.985 -10.207 -2.763 12.150 Atomic orbital electron populations 1.23357 0.76422 1.05810 1.01938 1.85993 1.23365 1.25796 1.88462 1.18548 0.91641 0.84145 0.94486 1.21232 1.00638 0.91907 1.12961 1.21190 0.94780 0.97851 0.92695 1.20448 0.94331 0.95660 1.11138 1.18251 0.82874 0.91837 0.94477 1.19691 0.91447 0.96966 1.13714 1.85925 1.15120 1.38286 1.83640 1.23289 0.98396 0.80337 0.99021 1.22461 0.93121 1.01503 1.02065 1.19338 0.91540 0.85736 0.94287 0.92801 1.45893 1.30766 1.48528 1.14650 1.18450 0.79297 0.79738 0.87536 1.90567 1.68971 1.68882 1.22209 1.21385 1.12117 1.28533 0.99079 0.89830 1.26856 0.97297 0.97168 0.96885 1.70165 1.20530 1.35562 1.18457 0.85154 0.77538 0.78105 0.78037 1.18155 1.19943 1.17864 0.92476 0.92324 0.85040 0.84877 0.87197 0.82881 0.91348 0.82914 0.89394 0.87617 0.77236 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.51 16 2 O -0.32 -9.26 10.50 -92.39 -0.97 -10.23 16 3 C 0.16 5.33 6.68 22.46 0.15 5.48 16 4 C -0.25 -9.47 9.04 22.35 0.20 -9.27 16 5 C -0.05 -2.10 9.07 22.29 0.20 -1.90 16 6 C -0.21 -8.58 5.56 -19.71 -0.11 -8.69 16 7 C 0.17 5.94 6.47 22.51 0.15 6.09 16 8 C -0.20 -6.53 9.87 22.52 0.22 -6.31 16 9 O -0.32 -9.09 10.27 -91.88 -0.94 -10.04 16 10 C 0.06 1.43 7.03 72.12 0.51 1.94 16 11 C -0.15 -4.08 5.67 30.75 0.17 -3.90 16 12 C 0.20 7.73 2.70 44.29 0.12 7.85 16 13 H 0.05 2.45 7.57 -2.39 -0.02 2.43 16 14 N -0.75 -33.20 4.85 -450.15 -2.18 -35.39 16 15 C 0.55 30.75 6.30 86.36 0.54 31.29 16 16 O -0.62 -39.94 12.95 -4.33 -0.06 -40.00 16 17 C -0.57 -32.08 9.54 24.83 0.24 -31.84 16 18 H 0.08 4.22 7.85 -2.91 -0.02 4.19 16 19 C 0.03 1.84 5.50 85.30 0.47 2.31 16 20 N -0.82 -49.24 11.83 21.83 0.26 -48.98 16 21 Si 0.99 40.60 29.56 68.60 2.03 42.63 16 22 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 25 H 0.06 1.20 7.66 -2.39 -0.02 1.18 16 26 H 0.06 1.21 7.66 -2.39 -0.02 1.19 16 27 H 0.13 1.81 8.14 -2.38 -0.02 1.80 16 28 H 0.13 4.63 6.31 -2.91 -0.02 4.61 16 29 H 0.11 6.02 4.69 -2.91 -0.01 6.01 16 30 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 31 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.09 2.20 8.11 -2.39 -0.02 2.18 16 34 H 0.11 2.41 8.14 -2.38 -0.02 2.39 16 35 H 0.39 15.34 8.56 -92.71 -0.79 14.54 16 36 H 0.27 15.03 8.29 -92.71 -0.77 14.26 16 Total: -1.00 -75.83 301.85 2.44 -73.40 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 0.33 Total: 34.07 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 3.98 Total: -5.45 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -1.93 Total: -84.37 kcal Atomic # 8 Polarization: -58.30 SS G_CDS: -1.97 Total: -60.27 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -75.83 2.44 -73.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364394715.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.079 kcal (2) G-P(sol) polarization free energy of solvation -75.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds