Wall clock time and date at job start Mon Mar 30 2020 02:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35892 * 117.00129 * 2 1 4 4 C 1.38793 * 119.86676 * 0.02948 * 3 2 1 5 5 C 1.38367 * 119.85725 * 179.03959 * 4 3 2 6 6 C 1.37631 * 119.73561 * 0.22395 * 5 4 3 7 7 C 1.38814 * 120.96554 * 1.52721 * 6 5 4 8 8 C 1.38578 * 119.86448 * 179.97438 * 3 2 1 9 9 O 1.35441 * 120.64483 * 175.90092 * 7 6 5 10 10 C 1.43292 * 115.77264 * 289.12115 * 9 7 6 11 11 C 1.52193 * 110.07615 * 89.04721 * 10 9 7 12 12 N 1.46368 * 111.17266 * 299.04412 * 11 10 9 13 13 C 1.34775 * 119.73161 * 243.95461 * 12 11 10 14 14 O 1.21691 * 119.99997 * 354.78529 * 13 12 11 15 15 C 1.46371 * 120.00120 * 174.77453 * 13 12 11 16 16 H 1.08001 * 120.00059 * 4.98838 * 15 13 12 17 17 C 1.40048 * 120.00005 * 184.99382 * 15 13 12 18 18 N 1.30672 * 119.99915 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00168 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47319 * 59.99578 * 19 17 15 21 21 H 1.48496 * 109.47615 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47063 * 300.00101 * 19 17 15 23 23 C 1.46614 * 120.53935 * 63.98776 * 12 11 10 24 24 H 1.09002 * 109.47223 * 59.99594 * 1 2 3 25 25 H 1.08994 * 109.46703 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46312 * 299.99606 * 1 2 3 27 27 H 1.08003 * 120.06910 * 359.05941 * 4 3 2 28 28 H 1.08000 * 120.13277 * 180.22078 * 5 4 3 29 29 H 1.08005 * 120.06356 * 359.91033 * 8 3 2 30 30 H 1.09000 * 109.36751 * 328.86246 * 10 9 7 31 31 H 1.08996 * 109.27245 * 209.16752 * 10 9 7 32 32 H 1.08998 * 109.13673 * 178.61192 * 11 10 9 33 33 H 1.08998 * 109.14244 * 59.48047 * 11 10 9 34 34 H 0.97006 * 119.99788 * 180.02562 * 18 17 15 35 35 H 1.09004 * 109.58224 * 159.49534 * 23 12 11 36 36 H 1.08999 * 109.70163 * 39.14845 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2874 2.3731 0.0006 5 6 1.9157 3.6057 0.0207 6 6 3.2904 3.6711 0.0353 7 6 4.0607 2.5169 -0.0015 8 6 3.4301 1.2800 0.0005 9 8 5.4114 2.5903 -0.0702 10 6 5.9480 3.0438 -1.3190 11 6 6.0721 4.5606 -1.3143 12 7 4.7660 5.1974 -1.1385 13 6 4.2586 5.9650 -2.1233 14 8 4.9250 6.2040 -3.1130 15 6 2.9059 6.5109 -2.0024 16 1 2.3448 6.3666 -1.0910 17 6 2.3393 7.2204 -3.0687 18 7 3.0184 7.3954 -4.1713 19 14 0.6133 7.9177 -2.9142 20 1 0.5660 8.8757 -1.7805 21 1 0.2488 8.6203 -4.1707 22 1 -0.3471 6.8121 -2.6683 23 6 4.0055 5.0076 0.1005 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 0.2090 2.3154 -0.0142 28 1 1.3297 4.5129 0.0249 29 1 4.0171 0.3735 0.0024 30 1 5.2863 2.7377 -2.1293 31 1 6.9326 2.6010 -1.4695 32 1 6.5042 4.8867 -2.2604 33 1 6.7297 4.8629 -0.4993 34 1 2.6260 7.8871 -4.9097 35 1 3.2737 5.8086 0.2063 36 1 4.6841 5.0177 0.9534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367246200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:40 Heat of formation + Delta-G solvation = -72.760074 kcal Electronic energy + Delta-G solvation = -21946.902732 eV Core-core repulsion = 18590.296182 eV Total energy + Delta-G solvation = -3356.606550 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.38832 -39.04961 -37.28635 -36.29682 -34.04090 -32.57360 -31.00932 -30.52830 -28.31126 -27.45721 -26.15083 -24.96962 -22.94381 -21.81023 -20.84415 -19.31797 -18.28922 -16.95720 -16.29197 -16.07999 -15.72763 -15.59448 -15.39088 -14.96821 -14.50094 -14.16283 -13.98093 -13.43459 -13.18547 -12.85968 -12.61042 -12.36074 -12.09786 -11.74700 -11.40457 -11.35270 -11.26022 -10.98046 -10.88957 -10.72708 -10.54100 -10.30698 -10.13585 -9.70089 -8.90377 -8.45771 -7.90186 -7.63064 -7.35360 -6.25611 -4.70351 1.42584 1.68649 3.10015 3.15587 3.16778 3.22647 3.70843 4.03700 4.32265 4.49342 4.62888 4.95027 5.11533 5.14170 5.18239 5.34311 5.40786 5.45887 5.55963 5.58645 5.68696 5.79870 5.86033 5.98003 6.06375 6.28023 6.36178 6.45044 6.51435 6.63908 6.72824 6.94077 7.39024 7.46147 7.53183 7.82748 8.06125 8.27178 8.95976 9.32918 10.50391 10.68902 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.007096 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.761942 B = 3945.109694 C = 5301.332713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.130 3.870 4 C -0.218 4.218 5 C -0.044 4.044 6 C -0.149 4.149 7 C 0.144 3.856 8 C -0.175 4.175 9 O -0.330 6.330 10 C 0.053 3.947 11 C 0.089 3.911 12 N -0.638 5.638 13 C 0.557 3.443 14 O -0.577 6.577 15 C -0.539 4.539 16 H 0.072 0.928 17 C 0.088 3.912 18 N -0.767 5.767 19 Si 0.903 3.097 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.267 1.267 23 C 0.170 3.830 24 H 0.055 0.945 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.127 0.873 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.269 0.731 35 H 0.096 0.904 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.015 -10.381 8.826 14.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.085 3.915 4 C -0.237 4.237 5 C -0.063 4.063 6 C -0.152 4.152 7 C 0.100 3.900 8 C -0.194 4.194 9 O -0.247 6.247 10 C -0.023 4.023 11 C -0.036 4.036 12 N -0.375 5.375 13 C 0.364 3.636 14 O -0.459 6.459 15 C -0.576 4.576 16 H 0.090 0.910 17 C -0.132 4.132 18 N -0.395 5.395 19 Si 0.728 3.272 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.192 1.192 23 C 0.045 3.955 24 H 0.074 0.926 25 H 0.114 0.886 26 H 0.073 0.927 27 H 0.145 0.855 28 H 0.151 0.849 29 H 0.148 0.852 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.386 -10.371 8.195 13.645 hybrid contribution -1.314 0.381 -0.085 1.370 sum -4.699 -9.989 8.111 13.699 Atomic orbital electron populations 1.23014 0.78641 1.03495 1.01474 1.86019 1.21171 1.27211 1.89118 1.18644 0.91575 0.83998 0.97245 1.21245 0.99792 0.92272 1.10388 1.20652 0.93360 0.97218 0.95020 1.21047 0.94182 0.96626 1.03299 1.18159 0.83333 0.91178 0.97335 1.20327 0.91509 0.97907 1.09620 1.85998 1.16569 1.86277 1.35853 1.23275 0.98720 0.96230 0.84051 1.21426 0.87857 0.91071 1.03210 1.47996 1.18499 1.53182 1.17852 1.18318 0.87432 0.77288 0.80580 1.90588 1.61630 1.62559 1.31145 1.20910 0.98741 1.36343 1.01574 0.91007 1.25720 0.98525 0.94360 0.94564 1.69997 1.36067 1.30360 1.03105 0.86496 0.82768 0.79594 0.78348 1.19143 1.20507 1.19212 1.20350 0.94882 0.92667 0.87586 0.92603 0.88582 0.92719 0.85536 0.84852 0.85152 0.92166 0.88417 0.88315 0.92791 0.91987 0.88582 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.48 10.49 -19.40 -0.20 -4.68 16 3 C 0.13 2.04 6.68 -39.25 -0.26 1.78 16 4 C -0.22 -3.30 9.04 -39.33 -0.36 -3.65 16 5 C -0.04 -0.74 9.71 -39.76 -0.39 -1.12 16 6 C -0.15 -2.74 5.51 -104.13 -0.57 -3.32 16 7 C 0.14 2.60 5.59 -39.15 -0.22 2.38 16 8 C -0.17 -2.89 9.93 -39.23 -0.39 -3.28 16 9 O -0.33 -5.85 9.90 -18.01 -0.18 -6.03 16 10 C 0.05 0.90 6.69 36.75 0.25 1.15 16 11 C 0.09 1.75 6.25 -4.53 -0.03 1.72 16 12 N -0.64 -14.51 2.69 -176.63 -0.47 -14.98 16 13 C 0.56 15.54 7.58 -12.99 -0.10 15.45 16 14 O -0.58 -18.28 14.34 5.20 0.07 -18.21 16 15 C -0.54 -14.60 8.75 -35.63 -0.31 -14.91 16 16 H 0.07 1.75 5.82 -52.49 -0.31 1.44 16 17 C 0.09 2.39 5.50 -17.37 -0.10 2.30 16 18 N -0.77 -22.52 11.84 55.55 0.66 -21.86 16 19 Si 0.90 19.50 29.56 -169.99 -5.02 14.47 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 C 0.17 3.28 5.42 -4.63 -0.03 3.25 16 24 H 0.06 0.52 7.64 -51.93 -0.40 0.12 16 25 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.46 7.67 -51.93 -0.40 0.06 16 27 H 0.13 1.56 6.28 -52.48 -0.33 1.23 16 28 H 0.13 2.10 7.97 -52.49 -0.42 1.68 16 29 H 0.13 1.98 8.06 -52.48 -0.42 1.55 16 30 H 0.06 1.13 7.88 -51.93 -0.41 0.72 16 31 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.10 2.11 6.85 -51.93 -0.36 1.75 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 35 H 0.10 1.86 5.55 -51.93 -0.29 1.57 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 301.17 15.07 4.54 4.54 Total: -1.00 -34.00 301.17 -6.27 -40.26 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.15 Total: 3.49 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -1.51 Total: 3.00 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.18 Total: -36.85 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.31 Total: -28.92 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.00 -6.27 -40.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367246200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.496 kcal (2) G-P(sol) polarization free energy of solvation -33.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds