Wall clock time and date at job start Mon Mar 30 2020 02:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35892 * 117.00129 * 2 1 4 4 C 1.38793 * 119.86676 * 0.02948 * 3 2 1 5 5 C 1.38367 * 119.85725 * 179.03959 * 4 3 2 6 6 C 1.37631 * 119.73561 * 0.22395 * 5 4 3 7 7 C 1.38814 * 120.96554 * 1.52721 * 6 5 4 8 8 C 1.38578 * 119.86448 * 179.97438 * 3 2 1 9 9 O 1.35441 * 120.64483 * 175.90092 * 7 6 5 10 10 C 1.43292 * 115.77264 * 289.12115 * 9 7 6 11 11 C 1.52193 * 110.07615 * 89.04721 * 10 9 7 12 12 N 1.46368 * 111.17266 * 299.04412 * 11 10 9 13 13 C 1.34775 * 119.73161 * 243.95461 * 12 11 10 14 14 O 1.21691 * 119.99997 * 354.78529 * 13 12 11 15 15 C 1.46371 * 120.00120 * 174.77453 * 13 12 11 16 16 H 1.08001 * 120.00059 * 4.98838 * 15 13 12 17 17 C 1.40048 * 120.00005 * 184.99382 * 15 13 12 18 18 N 1.30672 * 119.99915 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00168 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47319 * 59.99578 * 19 17 15 21 21 H 1.48496 * 109.47615 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47063 * 300.00101 * 19 17 15 23 23 C 1.46614 * 120.53935 * 63.98776 * 12 11 10 24 24 H 1.09002 * 109.47223 * 59.99594 * 1 2 3 25 25 H 1.08994 * 109.46703 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46312 * 299.99606 * 1 2 3 27 27 H 1.08003 * 120.06910 * 359.05941 * 4 3 2 28 28 H 1.08000 * 120.13277 * 180.22078 * 5 4 3 29 29 H 1.08005 * 120.06356 * 359.91033 * 8 3 2 30 30 H 1.09000 * 109.36751 * 328.86246 * 10 9 7 31 31 H 1.08996 * 109.27245 * 209.16752 * 10 9 7 32 32 H 1.08998 * 109.13673 * 178.61192 * 11 10 9 33 33 H 1.08998 * 109.14244 * 59.48047 * 11 10 9 34 34 H 0.97006 * 119.99788 * 180.02562 * 18 17 15 35 35 H 1.09004 * 109.58224 * 159.49534 * 23 12 11 36 36 H 1.08999 * 109.70163 * 39.14845 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2874 2.3731 0.0006 5 6 1.9157 3.6057 0.0207 6 6 3.2904 3.6711 0.0353 7 6 4.0607 2.5169 -0.0015 8 6 3.4301 1.2800 0.0005 9 8 5.4114 2.5903 -0.0702 10 6 5.9480 3.0438 -1.3190 11 6 6.0721 4.5606 -1.3143 12 7 4.7660 5.1974 -1.1385 13 6 4.2586 5.9650 -2.1233 14 8 4.9250 6.2040 -3.1130 15 6 2.9059 6.5109 -2.0024 16 1 2.3448 6.3666 -1.0910 17 6 2.3393 7.2204 -3.0687 18 7 3.0184 7.3954 -4.1713 19 14 0.6133 7.9177 -2.9142 20 1 0.5660 8.8757 -1.7805 21 1 0.2488 8.6203 -4.1707 22 1 -0.3471 6.8121 -2.6683 23 6 4.0055 5.0076 0.1005 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 0.2090 2.3154 -0.0142 28 1 1.3297 4.5129 0.0249 29 1 4.0171 0.3735 0.0024 30 1 5.2863 2.7377 -2.1293 31 1 6.9326 2.6010 -1.4695 32 1 6.5042 4.8867 -2.2604 33 1 6.7297 4.8629 -0.4993 34 1 2.6260 7.8871 -4.9097 35 1 3.2737 5.8086 0.2063 36 1 4.6841 5.0177 0.9534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367246200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:40 Heat of formation + Delta-G solvation = -96.066708 kcal Electronic energy + Delta-G solvation = -21947.913383 eV Core-core repulsion = 18590.296182 eV Total energy + Delta-G solvation = -3357.617201 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.70742 -40.32055 -39.12753 -37.54987 -35.88336 -34.63428 -32.42447 -31.82008 -29.89565 -28.42386 -28.04621 -26.36280 -24.47163 -23.25765 -22.12635 -21.14575 -19.55176 -18.64693 -17.98687 -17.31325 -17.21338 -16.95633 -16.65354 -16.48988 -16.00621 -15.81581 -15.34749 -14.92253 -14.52526 -14.43878 -14.19124 -13.75752 -13.28773 -13.16974 -13.05786 -12.92973 -12.90310 -12.65580 -12.21756 -12.18880 -12.01842 -11.93271 -11.69781 -11.11491 -10.90270 -9.84334 -9.72384 -9.27886 -9.02300 -8.28494 -6.82417 0.14132 0.39939 1.40083 1.43238 1.54371 2.12154 2.23595 2.44989 2.48398 2.84934 3.14990 3.58064 3.78973 3.94628 4.05354 4.11591 4.14080 4.22382 4.31460 4.43280 4.44028 4.51086 4.60077 4.68524 4.76744 4.81173 4.91212 4.93431 5.19747 5.32360 5.39109 5.47452 5.59815 5.73774 6.11862 6.33847 6.37057 6.49761 6.88572 7.36385 8.45025 8.67116 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.007096 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.761942 B = 3945.109694 C = 5301.332713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.134 3.866 4 C -0.213 4.213 5 C -0.052 4.052 6 C -0.171 4.171 7 C 0.127 3.873 8 C -0.183 4.183 9 O -0.330 6.330 10 C 0.064 3.936 11 C 0.085 3.915 12 N -0.641 5.641 13 C 0.540 3.460 14 O -0.630 6.630 15 C -0.558 4.558 16 H 0.095 0.905 17 C 0.030 3.970 18 N -0.823 5.823 19 Si 0.988 3.012 20 H -0.252 1.252 21 H -0.279 1.279 22 H -0.249 1.249 23 C 0.170 3.830 24 H 0.060 0.940 25 H 0.123 0.877 26 H 0.069 0.931 27 H 0.158 0.842 28 H 0.142 0.858 29 H 0.140 0.860 30 H 0.038 0.962 31 H 0.138 0.862 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.273 0.727 35 H 0.092 0.908 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.361 -11.543 10.421 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.088 3.912 4 C -0.231 4.231 5 C -0.071 4.071 6 C -0.174 4.174 7 C 0.083 3.917 8 C -0.202 4.202 9 O -0.247 6.247 10 C -0.012 4.012 11 C -0.039 4.039 12 N -0.376 5.376 13 C 0.347 3.653 14 O -0.518 6.518 15 C -0.594 4.594 16 H 0.113 0.887 17 C -0.185 4.185 18 N -0.452 5.452 19 Si 0.807 3.193 20 H -0.176 1.176 21 H -0.204 1.204 22 H -0.173 1.173 23 C 0.047 3.953 24 H 0.079 0.921 25 H 0.141 0.859 26 H 0.088 0.912 27 H 0.175 0.825 28 H 0.160 0.840 29 H 0.158 0.842 30 H 0.057 0.943 31 H 0.156 0.844 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.732 -11.580 9.858 16.252 hybrid contribution -0.587 0.623 -0.522 1.003 sum -6.319 -10.957 9.336 15.721 Atomic orbital electron populations 1.23388 0.76188 1.05727 1.02402 1.86022 1.23670 1.26237 1.88645 1.18747 0.91458 0.84937 0.96030 1.21535 1.01354 0.91303 1.08915 1.20850 0.92881 0.98434 0.94941 1.20998 0.95038 0.95950 1.05373 1.18329 0.83401 0.91724 0.98286 1.20480 0.92414 0.97721 1.09617 1.85998 1.16766 1.86102 1.35807 1.23217 1.00226 0.94325 0.83391 1.21595 0.86784 0.92841 1.02716 1.47867 1.19555 1.52292 1.17916 1.18742 0.87968 0.77773 0.80831 1.90538 1.62979 1.64701 1.33552 1.21418 0.98878 1.36394 1.02747 0.88667 1.26960 1.03689 0.94145 0.93667 1.70186 1.38887 1.31724 1.04435 0.85206 0.76158 0.79246 0.78656 1.17604 1.20361 1.17272 1.20444 0.94988 0.93495 0.86378 0.92113 0.85922 0.91222 0.82482 0.84011 0.84193 0.94322 0.84400 0.90795 0.90616 0.91716 0.88944 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.32 10.49 -92.34 -0.97 -9.29 16 3 C 0.13 3.89 6.68 22.48 0.15 4.04 16 4 C -0.21 -5.85 9.04 22.43 0.20 -5.65 16 5 C -0.05 -1.67 9.71 22.16 0.22 -1.46 16 6 C -0.17 -6.17 5.51 -19.54 -0.11 -6.28 16 7 C 0.13 4.46 5.59 22.55 0.13 4.59 16 8 C -0.18 -5.82 9.93 22.50 0.22 -5.60 16 9 O -0.33 -11.38 9.90 -87.37 -0.86 -12.24 16 10 C 0.06 2.15 6.69 71.72 0.48 2.63 16 11 C 0.08 3.37 6.25 86.14 0.54 3.91 16 12 N -0.64 -29.68 2.69 -830.95 -2.23 -31.91 16 13 C 0.54 31.12 7.58 86.36 0.65 31.78 16 14 O -0.63 -42.01 14.34 -4.32 -0.06 -42.07 16 15 C -0.56 -30.54 8.75 24.83 0.22 -30.32 16 16 H 0.10 4.57 5.82 -2.91 -0.02 4.55 16 17 C 0.03 1.66 5.50 85.30 0.47 2.13 16 18 N -0.82 -49.83 11.84 21.84 0.26 -49.57 16 19 Si 0.99 39.50 29.56 68.60 2.03 41.53 16 20 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 21 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 22 H -0.25 -9.15 7.11 99.48 0.71 -8.45 16 23 C 0.17 6.53 5.42 85.94 0.47 6.99 16 24 H 0.06 0.90 7.64 -2.39 -0.02 0.88 16 25 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 0.89 7.67 -2.38 -0.02 0.87 16 27 H 0.16 3.26 6.28 -2.91 -0.02 3.24 16 28 H 0.14 4.18 7.97 -2.91 -0.02 4.16 16 29 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 30 H 0.04 1.46 7.88 -2.39 -0.02 1.45 16 31 H 0.14 3.51 8.14 -2.39 -0.02 3.49 16 32 H 0.07 3.32 6.85 -2.39 -0.02 3.30 16 33 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.27 15.08 8.29 -92.70 -0.77 14.31 16 35 H 0.09 3.54 5.55 -2.39 -0.01 3.52 16 36 H 0.08 2.75 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -76.43 301.17 4.01 -72.42 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 1.11 Total: 23.00 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 4.75 Total: 8.14 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -1.97 Total: -81.48 kcal Atomic # 8 Polarization: -61.71 SS G_CDS: -1.90 Total: -63.60 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -76.43 4.01 -72.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367246200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.649 kcal (2) G-P(sol) polarization free energy of solvation -76.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds