Wall clock time and date at job start Mon Mar 30 2020 02:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35894 * 117.00292 * 2 1 4 4 C 1.38800 * 120.07853 * 359.97393 * 3 2 1 5 5 C 1.38002 * 119.92384 * 180.10399 * 4 3 2 6 6 C 1.38556 * 120.39393 * 0.02562 * 5 4 3 7 7 C 1.38423 * 119.91814 * 359.83025 * 6 5 4 8 8 C 1.38458 * 120.08540 * 179.97438 * 3 2 1 9 9 O 1.35846 * 121.80315 * 180.27710 * 7 6 5 10 10 C 1.42828 * 117.86645 * 342.72830 * 9 7 6 11 11 C 1.53401 * 108.36923 * 49.19920 * 10 9 7 12 12 H 1.09001 * 109.69965 * 55.00960 * 11 10 9 13 13 C 1.50703 * 109.69892 * 175.56359 * 11 10 9 14 14 O 1.21293 * 120.00034 * 119.99845 * 13 11 10 15 15 N 1.34771 * 120.00342 * 300.00286 * 13 11 10 16 16 C 1.37096 * 120.00379 * 179.97438 * 15 13 11 17 17 H 1.08001 * 120.00183 * 0.02562 * 16 15 13 18 18 C 1.38952 * 120.00380 * 180.02562 * 16 15 13 19 19 N 1.31408 * 120.00525 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99679 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46845 * 90.00437 * 20 18 16 22 22 H 1.48503 * 109.47399 * 209.99926 * 20 18 16 23 23 H 1.48498 * 109.47295 * 330.00533 * 20 18 16 24 24 C 1.50793 * 118.70264 * 179.54442 * 6 5 4 25 25 H 1.09007 * 109.46817 * 60.00407 * 1 2 3 26 26 H 1.09005 * 109.47237 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47808 * 300.00383 * 1 2 3 28 28 H 1.07998 * 120.03582 * 0.08591 * 4 3 2 29 29 H 1.07997 * 119.80184 * 179.97438 * 5 4 3 30 30 H 1.07998 * 119.90504 * 359.96459 * 8 3 2 31 31 H 1.09007 * 109.68207 * 289.48401 * 10 9 7 32 32 H 1.09000 * 109.71544 * 168.93758 * 10 9 7 33 33 H 0.97000 * 119.99962 * 0.02562 * 15 13 11 34 34 H 0.96995 * 120.00506 * 179.97438 * 19 18 16 35 35 H 1.09002 * 109.42615 * 42.33726 * 24 6 5 36 36 H 1.08997 * 109.44452 * 282.45994 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2916 2.3759 -0.0005 5 6 1.9215 3.6038 -0.0027 6 6 3.3049 3.6820 -0.0049 7 6 4.0619 2.5232 -0.0013 8 6 3.4285 1.2852 0.0005 9 8 5.4200 2.5552 0.0023 10 6 6.0600 3.7759 -0.3725 11 6 5.4156 4.9220 0.4178 12 1 5.4650 4.7057 1.4850 13 6 6.1410 6.2104 0.1266 14 8 5.5430 7.1461 -0.3613 15 7 7.4541 6.3231 0.4083 16 6 8.1141 7.4950 0.1430 17 1 7.5817 8.3283 -0.2914 18 6 9.4681 7.6110 0.4330 19 7 10.1006 8.7345 0.1791 20 14 10.3889 6.1702 1.1850 21 1 10.9474 5.3205 0.1027 22 1 11.4948 6.6790 2.0355 23 1 9.4564 5.3655 2.0146 24 6 3.9532 5.0434 -0.0177 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3635 0.5139 0.8899 28 1 0.2130 2.3216 0.0004 29 1 1.3327 4.5091 -0.0036 30 1 4.0165 0.3794 0.0015 31 1 5.9277 3.9468 -1.4409 32 1 7.1231 3.7206 -0.1383 33 1 7.9324 5.5747 0.7982 34 1 11.0457 8.8156 0.3819 35 1 3.4238 5.7036 0.6693 36 1 3.9080 5.4574 -1.0250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371491347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:33 Heat of formation + Delta-G solvation = -87.546767 kcal Electronic energy + Delta-G solvation = -20973.499750 eV Core-core repulsion = 17616.252001 eV Total energy + Delta-G solvation = -3357.247749 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.90724 -39.54052 -38.29052 -36.53959 -34.31076 -33.57735 -31.79382 -30.53904 -30.13966 -27.57399 -25.53214 -25.26480 -23.28141 -22.68302 -20.46425 -19.25335 -18.60544 -18.37903 -16.83481 -16.57750 -16.23412 -15.93352 -15.28298 -15.03311 -14.89714 -14.53620 -14.25324 -13.66206 -13.44881 -13.26200 -13.07428 -12.80606 -12.77580 -12.52478 -12.28508 -11.97575 -11.41071 -11.28163 -11.15527 -10.76714 -10.66597 -10.59568 -10.39816 -10.04276 -9.67187 -8.67291 -8.52177 -8.28386 -7.99509 -6.39372 -3.91663 1.30466 1.34569 2.81994 2.98456 3.02286 3.11576 3.51531 3.56864 3.72167 4.03460 4.37293 4.66507 4.77347 4.80916 4.89471 4.91618 4.97046 5.04989 5.15338 5.20816 5.25032 5.32858 5.51243 5.62631 5.70126 5.80131 5.93003 6.13442 6.16170 6.22321 6.35137 6.42121 6.52419 7.20169 7.42825 7.47792 8.03996 8.48042 8.84650 9.32021 9.68757 10.73186 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.040561 B = 0.003801 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.146835 B = 7365.388529 C = 7948.248373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.150 3.850 4 C -0.239 4.239 5 C -0.045 4.045 6 C -0.184 4.184 7 C 0.170 3.830 8 C -0.185 4.185 9 O -0.311 6.311 10 C 0.071 3.929 11 C -0.140 4.140 12 H 0.098 0.902 13 C 0.455 3.545 14 O -0.571 6.571 15 N -0.583 5.583 16 C -0.309 4.309 17 H 0.121 0.879 18 C 0.045 3.955 19 N -0.876 5.876 20 Si 0.876 3.124 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.268 1.268 24 C -0.051 4.051 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.055 0.945 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.136 0.864 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.371 0.629 34 H 0.275 0.725 35 H 0.085 0.915 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.089 -16.769 0.977 22.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.105 3.895 4 C -0.258 4.258 5 C -0.063 4.063 6 C -0.185 4.185 7 C 0.124 3.876 8 C -0.205 4.205 9 O -0.224 6.224 10 C -0.004 4.004 11 C -0.162 4.162 12 H 0.116 0.884 13 C 0.241 3.759 14 O -0.454 6.454 15 N -0.221 5.221 16 C -0.438 4.438 17 H 0.139 0.861 18 C -0.159 4.159 19 N -0.515 5.515 20 Si 0.702 3.298 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.193 1.193 24 C -0.089 4.089 25 H 0.074 0.926 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.154 0.846 31 H 0.093 0.907 32 H 0.129 0.871 33 H 0.204 0.796 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.048 -16.332 0.696 22.218 hybrid contribution 0.637 -0.632 0.655 1.111 sum -14.410 -16.964 1.351 22.299 Atomic orbital electron populations 1.23044 0.78353 1.03767 1.01463 1.86038 1.21353 1.26921 1.88761 1.18491 0.91384 0.84097 0.95517 1.21059 0.99863 0.92125 1.12710 1.20680 0.93054 0.97256 0.95312 1.19956 0.94246 0.94818 1.09531 1.18286 0.82680 0.92314 0.94280 1.19547 0.91402 0.96792 1.12711 1.85979 1.16079 1.37105 1.83273 1.23085 0.96872 0.81095 0.99396 1.21894 0.96860 0.95435 1.01984 0.88380 1.19330 0.82617 0.88836 0.85138 1.90568 1.66414 1.40489 1.47976 1.42265 1.08439 1.14867 1.56517 1.19454 0.92644 0.91894 1.39802 0.86127 1.25054 0.96350 0.97021 0.97507 1.69611 1.10670 1.24696 1.46561 0.86723 0.80680 0.82437 0.79977 1.19346 1.19952 1.19305 1.20204 0.92676 0.92117 1.03865 0.92604 0.88351 0.92603 0.85477 0.85311 0.84571 0.90710 0.87085 0.79557 0.91436 0.89671 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.52 10.49 -19.41 -0.20 -3.72 16 3 C 0.15 1.86 6.68 -39.29 -0.26 1.60 16 4 C -0.24 -2.67 9.04 -39.46 -0.36 -3.03 16 5 C -0.04 -0.55 9.66 -39.55 -0.38 -0.93 16 6 C -0.18 -2.63 5.75 -104.39 -0.60 -3.23 16 7 C 0.17 2.50 6.47 -39.21 -0.25 2.25 16 8 C -0.19 -2.51 9.87 -39.20 -0.39 -2.90 16 9 O -0.31 -4.71 10.27 -19.26 -0.20 -4.91 16 10 C 0.07 1.07 6.25 37.37 0.23 1.30 16 11 C -0.14 -2.35 2.76 -91.53 -0.25 -2.60 16 12 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 13 C 0.46 10.01 7.11 -10.99 -0.08 9.93 16 14 O -0.57 -14.82 15.38 5.55 0.09 -14.73 16 15 N -0.58 -13.47 4.97 -10.96 -0.05 -13.53 16 16 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 17 H 0.12 3.80 7.39 -52.49 -0.39 3.42 16 18 C 0.04 1.19 5.50 -17.47 -0.10 1.10 16 19 N -0.88 -25.10 13.96 55.50 0.77 -24.32 16 20 Si 0.88 18.92 27.74 -169.99 -4.71 14.20 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 24 C -0.05 -0.80 4.65 -27.80 -0.13 -0.93 16 25 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 26 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.13 1.08 6.31 -52.49 -0.33 0.75 16 29 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.11 1.54 7.49 -51.93 -0.39 1.15 16 33 H 0.37 7.55 5.16 -40.82 -0.21 7.34 16 34 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.09 1.49 7.71 -51.93 -0.40 1.09 16 LS Contribution 303.63 15.07 4.58 4.58 Total: -1.00 -31.98 303.63 -5.68 -37.66 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -4.22 Total: 9.71 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -1.72 Total: -4.93 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.72 Total: -37.85 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.32 Total: -23.36 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.71 Total: 14.20 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.98 -5.68 -37.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371491347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.886 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds