Wall clock time and date at job start Mon Mar 30 2020 02:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35894 * 117.00292 * 2 1 4 4 C 1.38800 * 120.07853 * 359.97393 * 3 2 1 5 5 C 1.38002 * 119.92384 * 180.10399 * 4 3 2 6 6 C 1.38556 * 120.39393 * 0.02562 * 5 4 3 7 7 C 1.38423 * 119.91814 * 359.83025 * 6 5 4 8 8 C 1.38458 * 120.08540 * 179.97438 * 3 2 1 9 9 O 1.35846 * 121.80315 * 180.27710 * 7 6 5 10 10 C 1.42828 * 117.86645 * 342.72830 * 9 7 6 11 11 C 1.53401 * 108.36923 * 49.19920 * 10 9 7 12 12 H 1.09001 * 109.69965 * 55.00960 * 11 10 9 13 13 C 1.50703 * 109.69892 * 175.56359 * 11 10 9 14 14 O 1.21293 * 120.00034 * 119.99845 * 13 11 10 15 15 N 1.34771 * 120.00342 * 300.00286 * 13 11 10 16 16 C 1.37096 * 120.00379 * 179.97438 * 15 13 11 17 17 H 1.08001 * 120.00183 * 0.02562 * 16 15 13 18 18 C 1.38952 * 120.00380 * 180.02562 * 16 15 13 19 19 N 1.31408 * 120.00525 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99679 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46845 * 90.00437 * 20 18 16 22 22 H 1.48503 * 109.47399 * 209.99926 * 20 18 16 23 23 H 1.48498 * 109.47295 * 330.00533 * 20 18 16 24 24 C 1.50793 * 118.70264 * 179.54442 * 6 5 4 25 25 H 1.09007 * 109.46817 * 60.00407 * 1 2 3 26 26 H 1.09005 * 109.47237 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47808 * 300.00383 * 1 2 3 28 28 H 1.07998 * 120.03582 * 0.08591 * 4 3 2 29 29 H 1.07997 * 119.80184 * 179.97438 * 5 4 3 30 30 H 1.07998 * 119.90504 * 359.96459 * 8 3 2 31 31 H 1.09007 * 109.68207 * 289.48401 * 10 9 7 32 32 H 1.09000 * 109.71544 * 168.93758 * 10 9 7 33 33 H 0.97000 * 119.99962 * 0.02562 * 15 13 11 34 34 H 0.96995 * 120.00506 * 179.97438 * 19 18 16 35 35 H 1.09002 * 109.42615 * 42.33726 * 24 6 5 36 36 H 1.08997 * 109.44452 * 282.45994 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2916 2.3759 -0.0005 5 6 1.9215 3.6038 -0.0027 6 6 3.3049 3.6820 -0.0049 7 6 4.0619 2.5232 -0.0013 8 6 3.4285 1.2852 0.0005 9 8 5.4200 2.5552 0.0023 10 6 6.0600 3.7759 -0.3725 11 6 5.4156 4.9220 0.4178 12 1 5.4650 4.7057 1.4850 13 6 6.1410 6.2104 0.1266 14 8 5.5430 7.1461 -0.3613 15 7 7.4541 6.3231 0.4083 16 6 8.1141 7.4950 0.1430 17 1 7.5817 8.3283 -0.2914 18 6 9.4681 7.6110 0.4330 19 7 10.1006 8.7345 0.1791 20 14 10.3889 6.1702 1.1850 21 1 10.9474 5.3205 0.1027 22 1 11.4948 6.6790 2.0355 23 1 9.4564 5.3655 2.0146 24 6 3.9532 5.0434 -0.0177 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3635 0.5139 0.8899 28 1 0.2130 2.3216 0.0004 29 1 1.3327 4.5091 -0.0036 30 1 4.0165 0.3794 0.0015 31 1 5.9277 3.9468 -1.4409 32 1 7.1231 3.7206 -0.1383 33 1 7.9324 5.5747 0.7982 34 1 11.0457 8.8156 0.3819 35 1 3.4238 5.7036 0.6693 36 1 3.9080 5.4574 -1.0250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371491347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:33 Heat of formation + Delta-G solvation = -109.992450 kcal Electronic energy + Delta-G solvation = -20974.473067 eV Core-core repulsion = 17616.252001 eV Total energy + Delta-G solvation = -3358.221067 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.02372 -40.65461 -39.83655 -37.51145 -36.19787 -34.98913 -33.79457 -31.52727 -31.24120 -28.31706 -27.13642 -26.56498 -24.63653 -23.68480 -21.82274 -21.00831 -20.09083 -19.53622 -18.19876 -17.80398 -17.33507 -16.86797 -16.66768 -16.25057 -16.14613 -15.73718 -15.68690 -15.22575 -14.69188 -14.59345 -14.40849 -14.27841 -14.09873 -13.95536 -13.25294 -13.00822 -12.81610 -12.49414 -12.46874 -12.14431 -12.01928 -11.95522 -11.58083 -11.54955 -11.49893 -10.53719 -10.31192 -9.52171 -8.98965 -8.45137 -6.07031 0.33538 0.35612 1.29805 1.32851 1.42758 1.78125 1.92069 2.20033 2.61362 2.67044 2.80489 3.08683 3.51279 3.64945 3.77683 3.84397 4.03118 4.04773 4.16755 4.30708 4.41905 4.45273 4.45658 4.48591 4.62641 4.77294 4.85693 4.95818 5.05478 5.17596 5.27600 5.44836 5.49504 5.51999 5.89742 6.29030 6.44447 6.50978 6.80290 7.30504 7.83104 8.71798 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.040561 B = 0.003801 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.146835 B = 7365.388529 C = 7948.248373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.151 3.849 4 C -0.230 4.230 5 C -0.045 4.045 6 C -0.198 4.198 7 C 0.151 3.849 8 C -0.198 4.198 9 O -0.313 6.313 10 C 0.074 3.926 11 C -0.129 4.129 12 H 0.117 0.883 13 C 0.461 3.539 14 O -0.615 6.615 15 N -0.582 5.582 16 C -0.331 4.331 17 H 0.060 0.940 18 C -0.009 4.009 19 N -0.928 5.928 20 Si 0.956 3.044 21 H -0.252 1.252 22 H -0.273 1.273 23 H -0.233 1.233 24 C -0.046 4.046 25 H 0.067 0.933 26 H 0.120 0.880 27 H 0.067 0.933 28 H 0.159 0.841 29 H 0.148 0.852 30 H 0.139 0.861 31 H 0.072 0.928 32 H 0.128 0.872 33 H 0.389 0.611 34 H 0.281 0.719 35 H 0.085 0.915 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.194 -20.097 2.112 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.106 3.894 4 C -0.249 4.249 5 C -0.063 4.063 6 C -0.200 4.200 7 C 0.106 3.894 8 C -0.217 4.217 9 O -0.226 6.226 10 C -0.001 4.001 11 C -0.150 4.150 12 H 0.135 0.865 13 C 0.248 3.752 14 O -0.501 6.501 15 N -0.222 5.222 16 C -0.460 4.460 17 H 0.078 0.922 18 C -0.208 4.208 19 N -0.568 5.568 20 Si 0.775 3.225 21 H -0.176 1.176 22 H -0.198 1.198 23 H -0.156 1.156 24 C -0.084 4.084 25 H 0.085 0.915 26 H 0.138 0.862 27 H 0.086 0.914 28 H 0.176 0.824 29 H 0.166 0.834 30 H 0.157 0.843 31 H 0.090 0.910 32 H 0.146 0.854 33 H 0.225 0.775 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.186 -19.689 1.832 25.554 hybrid contribution 0.766 0.419 0.242 0.906 sum -15.420 -19.270 2.074 24.767 Atomic orbital electron populations 1.23397 0.76008 1.05721 1.02550 1.86035 1.23769 1.26313 1.88368 1.18621 0.91206 0.85063 0.94548 1.21372 1.01403 0.91138 1.10941 1.20939 0.92359 0.98620 0.94384 1.19858 0.95193 0.93551 1.11353 1.18465 0.82484 0.92923 0.95514 1.19683 0.92327 0.96502 1.13217 1.85979 1.16583 1.36465 1.83586 1.23049 0.97592 0.80521 0.98933 1.21821 0.96939 0.92813 1.03464 0.86494 1.20285 0.82155 0.89995 0.82743 1.90549 1.67391 1.42794 1.49351 1.42065 1.08856 1.14067 1.57179 1.19033 0.93401 0.92284 1.41325 0.92161 1.26070 0.96764 1.00687 0.97321 1.69781 1.11425 1.27729 1.47862 0.85495 0.79180 0.78186 0.79610 1.17636 1.19827 1.15632 1.20098 0.92135 0.93350 1.02778 0.91487 0.86198 0.91419 0.82395 0.83436 0.84271 0.90963 0.85414 0.77460 0.90954 0.89694 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -6.43 10.49 -92.36 -0.97 -7.39 16 3 C 0.15 3.36 6.68 22.46 0.15 3.51 16 4 C -0.23 -4.41 9.04 22.35 0.20 -4.21 16 5 C -0.05 -0.99 9.66 22.29 0.22 -0.77 16 6 C -0.20 -5.37 5.75 -19.71 -0.11 -5.49 16 7 C 0.15 4.23 6.47 22.51 0.15 4.37 16 8 C -0.20 -5.04 9.87 22.52 0.22 -4.81 16 9 O -0.31 -8.92 10.27 -91.82 -0.94 -9.87 16 10 C 0.07 2.13 6.25 72.12 0.45 2.58 16 11 C -0.13 -4.20 2.76 -11.38 -0.03 -4.23 16 12 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 13 C 0.46 20.51 7.11 87.66 0.62 21.14 16 14 O -0.62 -33.29 15.38 -3.07 -0.05 -33.34 16 15 N -0.58 -26.91 4.97 -306.99 -1.52 -28.43 16 16 C -0.33 -19.00 10.16 84.04 0.85 -18.15 16 17 H 0.06 4.11 7.39 -2.91 -0.02 4.08 16 18 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 19 N -0.93 -54.94 13.96 21.66 0.30 -54.64 16 20 Si 0.96 37.94 27.74 68.60 1.90 39.84 16 21 H -0.25 -9.40 7.11 99.48 0.71 -8.70 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.23 -7.88 6.52 99.48 0.65 -7.23 16 24 C -0.05 -1.42 4.65 29.90 0.14 -1.29 16 25 H 0.07 0.53 7.66 -2.38 -0.02 0.52 16 26 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 28 H 0.16 1.99 6.31 -2.91 -0.02 1.97 16 29 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 30 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 31 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.13 3.20 7.49 -2.39 -0.02 3.18 16 33 H 0.39 15.02 5.16 -92.71 -0.48 14.54 16 34 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.07 2.43 7.71 -2.39 -0.02 2.41 16 Total: -1.00 -73.44 303.63 3.73 -69.70 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.58 Total: 30.19 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 4.44 Total: -6.07 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -1.22 Total: -83.07 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: -1.96 Total: -50.60 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 1.90 Total: 39.84 kcal Total: -73.44 3.73 -69.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371491347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.288 kcal (2) G-P(sol) polarization free energy of solvation -73.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds