Wall clock time and date at job start Mon Mar 30 2020 02:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35994 * 117.00356 * 2 1 4 4 C 1.38412 * 119.93661 * 0.02562 * 3 2 1 5 5 C 1.38239 * 119.89785 * 179.97438 * 4 3 2 6 6 C 1.38106 * 120.02076 * 359.92481 * 5 4 3 7 7 C 1.38593 * 120.41884 * 0.04956 * 6 5 4 8 8 C 1.38232 * 119.86168 * 0.06963 * 7 6 5 9 9 O 1.35941 * 121.82645 * 179.69431 * 8 7 6 10 10 C 1.42831 * 117.84706 * 17.21955 * 9 8 7 11 11 C 1.53409 * 108.35548 * 310.82360 * 10 9 8 12 12 C 1.50779 * 118.73500 * 180.22616 * 7 6 5 13 13 H 1.09002 * 109.43185 * 77.56224 * 12 7 6 14 14 N 1.46496 * 109.43325 * 317.65965 * 12 7 6 15 15 C 1.34777 * 120.00321 * 85.00059 * 14 12 7 16 16 O 1.21693 * 119.99628 * 359.97438 * 15 14 12 17 17 C 1.46374 * 120.00157 * 180.02562 * 15 14 12 18 18 H 1.08000 * 120.00077 * 353.94029 * 17 15 14 19 19 C 1.40051 * 119.99811 * 173.94805 * 17 15 14 20 20 N 1.30669 * 120.00240 * 6.15469 * 19 17 15 21 21 Si 1.86795 * 119.99889 * 186.15189 * 19 17 15 22 22 H 1.48500 * 109.47538 * 94.98266 * 21 19 17 23 23 H 1.48504 * 109.47168 * 214.98387 * 21 19 17 24 24 H 1.48507 * 109.47237 * 334.98344 * 21 19 17 25 25 H 1.08996 * 109.47264 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46721 * 299.99578 * 1 2 3 27 27 H 1.09000 * 109.46823 * 59.99484 * 1 2 3 28 28 H 1.08006 * 120.05356 * 0.22268 * 4 3 2 29 29 H 1.08001 * 119.99496 * 179.97438 * 5 4 3 30 30 H 1.08001 * 119.79431 * 180.02562 * 6 5 4 31 31 H 1.08999 * 109.68776 * 191.10999 * 10 9 8 32 32 H 1.09005 * 109.72224 * 70.56021 * 10 9 8 33 33 H 1.08997 * 109.69465 * 304.99606 * 11 10 9 34 34 H 1.08998 * 109.69785 * 184.39888 * 11 10 9 35 35 H 0.97006 * 119.99748 * 264.99536 * 14 12 7 36 36 H 0.97004 * 120.00139 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2914 2.3717 0.0005 5 6 1.9199 3.6030 0.0011 6 6 3.2991 3.6747 0.0026 7 6 4.0620 2.5176 0.0027 8 6 3.4400 1.2832 -0.0004 9 8 4.1489 0.1233 -0.0066 10 6 5.5271 0.1817 0.3638 11 6 6.1926 1.3146 -0.4280 12 6 5.5648 2.6402 0.0096 13 1 5.9038 2.8874 1.0156 14 7 5.9716 3.7003 -0.9160 15 6 5.9938 4.9832 -0.5037 16 8 5.6754 5.2610 0.6375 17 6 6.3998 6.0424 -1.4287 18 1 6.7747 5.7886 -2.4093 19 6 6.3023 7.3850 -1.0422 20 7 5.9641 7.6894 0.1827 21 14 6.6558 8.7406 -2.2778 22 1 5.3827 9.1935 -2.8936 23 1 7.3053 9.8833 -1.5866 24 1 7.5606 8.2228 -3.3355 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 0.2128 2.3151 0.0046 29 1 1.3323 4.5091 0.0011 30 1 3.7863 4.6386 0.0035 31 1 6.0115 -0.7656 0.1269 32 1 5.6128 0.3807 1.4321 33 1 6.0267 1.1639 -1.4947 34 1 7.2626 1.3287 -0.2205 35 1 6.2252 3.4788 -1.8258 36 1 5.8962 8.6193 0.4503 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372325257.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:45 Heat of formation + Delta-G solvation = -84.664339 kcal Electronic energy + Delta-G solvation = -21727.464114 eV Core-core repulsion = 18370.341356 eV Total energy + Delta-G solvation = -3357.122757 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.61324 -38.70635 -37.48863 -36.29320 -34.24551 -32.48035 -30.92107 -30.12911 -29.28571 -27.11246 -26.48962 -24.42028 -23.28210 -21.65596 -20.06552 -19.61092 -17.76110 -17.49711 -16.79554 -16.36843 -15.72195 -15.38898 -15.15240 -14.73891 -14.42211 -14.32841 -14.11486 -13.75329 -12.92208 -12.76796 -12.49349 -12.40027 -12.29473 -11.74390 -11.45563 -11.27021 -11.19909 -11.00409 -10.71782 -10.63993 -10.51850 -10.41513 -10.35409 -10.14108 -8.90474 -8.15480 -7.69707 -7.63320 -7.44925 -6.25975 -4.70449 1.66545 1.89860 3.10712 3.18685 3.21680 3.45586 3.55542 4.03617 4.15942 4.48921 4.72224 4.95881 5.01510 5.13279 5.16524 5.19479 5.32896 5.41092 5.42664 5.51056 5.65500 5.75580 5.79092 5.88717 5.97664 6.07643 6.21971 6.42749 6.57649 6.95464 7.12762 7.23512 7.35227 7.38449 7.83800 7.92808 7.99880 8.26541 8.96673 9.43748 10.51334 10.68994 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.024754 B = 0.005116 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.860878 B = 5471.463833 C = 6221.522250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.311 6.311 3 C 0.081 3.919 4 C -0.183 4.183 5 C -0.123 4.123 6 C -0.090 4.090 7 C -0.128 4.128 8 C 0.100 3.900 9 O -0.311 6.311 10 C 0.065 3.935 11 C -0.165 4.165 12 C 0.197 3.803 13 H 0.092 0.908 14 N -0.755 5.755 15 C 0.555 3.445 16 O -0.575 6.575 17 C -0.545 4.545 18 H 0.068 0.932 19 C 0.089 3.911 20 N -0.765 5.765 21 Si 0.907 3.093 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.265 1.265 25 H 0.094 0.906 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.155 0.845 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.383 0.617 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.136 -12.162 -1.646 13.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.225 6.225 3 C 0.037 3.963 4 C -0.201 4.201 5 C -0.141 4.141 6 C -0.108 4.108 7 C -0.131 4.131 8 C 0.055 3.945 9 O -0.225 6.225 10 C -0.011 4.011 11 C -0.203 4.203 12 C 0.090 3.910 13 H 0.109 0.891 14 N -0.409 5.409 15 C 0.360 3.640 16 O -0.459 6.459 17 C -0.582 4.582 18 H 0.086 0.914 19 C -0.131 4.131 20 N -0.394 5.394 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.204 1.204 24 H -0.189 1.189 25 H 0.112 0.888 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.173 0.827 31 H 0.123 0.877 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.215 0.785 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.356 -12.170 -0.702 13.748 hybrid contribution 0.090 0.932 -1.021 1.386 sum -6.267 -11.238 -1.723 12.982 Atomic orbital electron populations 1.22962 0.79446 1.03241 1.00974 1.86119 1.20276 1.26446 1.89676 1.18296 0.89249 0.84746 1.04033 1.20946 0.99244 0.91856 1.08095 1.20889 0.94936 0.96597 1.01675 1.21650 0.93110 1.00161 0.95853 1.20426 0.97713 0.91156 1.03783 1.17933 0.87657 0.85393 1.03564 1.86021 1.23136 1.28927 1.84423 1.22907 0.79663 0.99677 0.98803 1.22501 1.01311 0.95015 1.01462 1.19260 0.87617 0.87477 0.96615 0.89074 1.46225 1.74368 1.06540 1.13796 1.18234 0.77627 0.80116 0.88023 1.90610 1.53374 1.81553 1.20326 1.20884 1.46149 0.89997 1.01139 0.91352 1.25679 0.92911 0.99423 0.95070 1.70013 1.33986 1.18842 1.16515 0.86374 0.79085 0.80406 0.81017 1.19777 1.20448 1.18888 0.88759 0.93073 0.93079 0.85576 0.86012 0.82743 0.87681 0.91908 0.90341 0.89519 0.78532 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.91 10.21 -35.81 -0.37 -5.27 16 3 C 0.08 1.42 6.70 -39.03 -0.26 1.16 16 4 C -0.18 -2.95 9.03 -39.52 -0.36 -3.30 16 5 C -0.12 -2.22 10.04 -39.63 -0.40 -2.62 16 6 C -0.09 -1.91 9.08 -39.50 -0.36 -2.27 16 7 C -0.13 -2.55 5.56 -104.45 -0.58 -3.13 16 8 C 0.10 1.86 6.48 -39.10 -0.25 1.61 16 9 O -0.31 -5.30 10.00 -35.64 -0.36 -5.66 16 10 C 0.07 0.88 7.03 37.37 0.26 1.14 16 11 C -0.16 -2.40 5.67 -26.48 -0.15 -2.55 16 12 C 0.20 3.81 2.70 -69.01 -0.19 3.62 16 13 H 0.09 1.96 7.57 -51.93 -0.39 1.56 16 14 N -0.76 -16.33 4.85 -56.27 -0.27 -16.61 16 15 C 0.55 14.92 6.30 -12.99 -0.08 14.84 16 16 O -0.58 -17.40 12.97 5.20 0.07 -17.33 16 17 C -0.54 -14.82 9.53 -35.63 -0.34 -15.15 16 18 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 19 C 0.09 2.41 5.49 -17.37 -0.10 2.31 16 20 N -0.77 -22.09 11.85 55.55 0.66 -21.43 16 21 Si 0.91 19.66 29.56 -169.99 -5.03 14.63 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 27 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 28 H 0.13 1.61 6.28 -52.48 -0.33 1.28 16 29 H 0.12 1.98 8.06 -52.49 -0.42 1.55 16 30 H 0.16 3.91 4.69 -52.49 -0.25 3.66 16 31 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.38 7.40 8.55 -40.82 -0.35 7.05 16 36 H 0.27 7.07 8.29 -40.82 -0.34 6.74 16 LS Contribution 301.49 15.07 4.54 4.54 Total: -1.00 -33.43 301.49 -6.75 -40.19 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -4.19 Total: 9.99 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -1.81 Total: -3.05 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.39 Total: -38.04 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.65 Total: -28.26 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.43 -6.75 -40.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372325257.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.476 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds