Wall clock time and date at job start Mon Mar 30 2020 02:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 110.99967 * 2 1 4 4 C 1.53006 * 109.46980 * 66.04627 * 3 2 1 5 5 O 1.42904 * 109.46946 * 64.99979 * 4 3 2 6 6 C 1.42901 * 113.99537 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46890 * 180.02562 * 6 5 4 8 8 H 1.08006 * 120.00159 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00120 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00089 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99938 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 269.99556 * 11 9 7 13 13 H 1.48503 * 109.47261 * 149.99737 * 11 9 7 14 14 H 1.48500 * 109.47454 * 29.99730 * 11 9 7 15 15 C 1.46900 * 110.99848 * 236.04599 * 2 1 3 16 16 H 1.09000 * 110.01036 * 178.25267 * 15 2 1 17 17 C 1.53868 * 110.02785 * 299.63089 * 15 2 1 18 18 C 1.54167 * 108.70400 * 166.47422 * 17 15 2 19 19 S 1.82917 * 105.08349 * 332.09119 * 18 17 15 20 20 O 1.42104 * 109.35247 * 115.52444 * 19 18 17 21 21 O 1.42103 * 109.35428 * 248.58940 * 19 18 17 22 22 C 1.55045 * 110.02497 * 56.87826 * 15 2 1 23 23 H 1.09003 * 109.47046 * 59.99777 * 1 2 3 24 24 H 1.09002 * 109.47247 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46976 * 299.99786 * 1 2 3 26 26 H 1.08993 * 109.46832 * 306.04770 * 3 2 1 27 27 H 1.08994 * 109.47037 * 186.04227 * 3 2 1 28 28 H 1.08996 * 109.47172 * 305.00162 * 4 3 2 29 29 H 1.08997 * 109.46636 * 184.99637 * 4 3 2 30 30 H 1.09003 * 109.46905 * 60.00448 * 6 5 4 31 31 H 1.08996 * 109.47465 * 299.99930 * 6 5 4 32 32 H 0.96998 * 119.99255 * 0.02562 * 10 9 7 33 33 H 1.09002 * 109.65207 * 286.32454 * 17 15 2 34 34 H 1.08998 * 109.64762 * 46.62235 * 17 15 2 35 35 H 1.08997 * 110.32179 * 90.99251 * 18 17 15 36 36 H 1.09000 * 110.32073 * 213.19255 * 18 17 15 37 37 H 1.09000 * 110.78870 * 316.53735 * 22 15 2 38 38 H 1.08995 * 110.79757 * 80.00692 * 22 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3183 5 8 2.2956 1.3975 2.3979 6 6 2.0222 1.9635 3.6813 7 6 2.7704 1.1941 4.7393 8 1 3.3922 0.3564 4.4596 9 6 2.6604 1.5589 6.0643 10 7 1.9029 2.5786 6.4050 11 14 3.5885 0.6056 7.3756 12 1 2.7412 -0.5094 7.8699 13 1 3.9216 1.5118 8.5039 14 1 4.8404 0.0565 6.7956 15 6 1.9954 -0.7660 -1.1376 16 1 3.0848 -0.7297 -1.1396 17 6 1.5170 -2.2261 -1.0563 18 6 1.7885 -2.9115 -2.4103 19 16 1.7299 -1.5641 -3.6460 20 8 3.0121 -1.4135 -4.2397 21 8 0.5837 -1.7299 -4.4695 22 6 1.4425 -0.1902 -2.4667 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.5611 1.9273 -0.8309 27 1 3.0797 1.3444 -0.1082 28 1 0.5532 2.0058 1.4692 29 1 1.9439 3.1011 1.2831 30 1 0.9520 1.9102 3.8813 31 1 2.3430 3.0051 3.6949 32 1 1.4214 3.0737 5.7240 33 1 2.0597 -2.7463 -0.2670 34 1 0.4487 -2.2503 -0.8410 35 1 2.7729 -3.3794 -2.4070 36 1 1.0171 -3.6522 -2.6211 37 1 0.3783 0.0289 -2.3804 38 1 1.9987 0.6987 -2.7645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385199064.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:31 Heat of formation + Delta-G solvation = -107.847980 kcal Electronic energy + Delta-G solvation = -19974.198328 eV Core-core repulsion = 16751.514203 eV Total energy + Delta-G solvation = -3222.684124 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.20716 -37.33446 -36.79645 -36.30964 -34.22811 -32.89803 -30.05424 -29.08127 -26.74835 -26.24954 -24.66457 -22.51349 -21.54453 -20.16519 -19.14831 -17.43516 -17.10481 -16.94562 -16.11550 -15.87060 -15.73721 -14.87926 -14.82809 -14.53203 -14.30418 -13.77583 -13.71269 -13.23028 -12.82406 -12.79530 -12.46107 -12.34692 -12.29763 -12.00844 -11.92005 -11.69412 -11.39796 -11.23861 -11.03113 -10.86383 -10.69506 -10.66803 -10.18923 -10.11041 -8.85656 -8.64571 -8.39693 -8.23723 -6.47103 -4.15351 -0.29084 2.19779 3.22797 3.42010 3.46263 3.57057 3.62817 3.67703 4.15271 4.29571 4.34436 4.42446 4.43302 4.61164 4.68681 4.99301 5.08589 5.17501 5.28289 5.30798 5.32485 5.46921 5.49100 5.55763 5.72698 5.77888 5.87240 5.98779 6.10698 6.73629 6.87478 6.92744 7.11703 7.89682 8.18233 8.64739 8.80983 9.55278 10.93214 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.035976 B = 0.003345 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.103086 B = 8368.223434 C = 8692.890049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.504 5.504 3 C 0.058 3.942 4 C 0.062 3.938 5 O -0.371 6.371 6 C 0.185 3.815 7 C -0.593 4.593 8 H 0.061 0.939 9 C 0.016 3.984 10 N -0.913 5.913 11 Si 1.081 2.919 12 H -0.286 1.286 13 H -0.283 1.283 14 H -0.286 1.286 15 C 0.089 3.911 16 H 0.109 0.891 17 C -0.113 4.113 18 C -0.588 4.588 19 S 2.390 3.610 20 O -0.938 6.938 21 O -0.943 6.943 22 C -0.635 4.635 23 H 0.029 0.971 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.041 0.959 30 H -0.007 1.007 31 H -0.008 1.008 32 H 0.266 0.734 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.818 -7.816 -18.569 20.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.226 5.226 3 C -0.069 4.069 4 C -0.016 4.016 5 O -0.290 6.290 6 C 0.111 3.889 7 C -0.631 4.631 8 H 0.079 0.921 9 C -0.187 4.187 10 N -0.549 5.549 11 Si 0.909 3.091 12 H -0.213 1.213 13 H -0.209 1.209 14 H -0.212 1.212 15 C -0.022 4.022 16 H 0.127 0.873 17 C -0.152 4.152 18 C -0.718 4.718 19 S 2.573 3.427 20 O -0.935 6.935 21 O -0.940 6.940 22 C -0.766 4.766 23 H 0.047 0.953 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.011 0.989 31 H 0.010 0.990 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.153 -8.289 -17.511 19.493 hybrid contribution -0.964 0.866 -1.563 2.030 sum -3.117 -7.423 -19.074 20.704 Atomic orbital electron populations 1.22671 0.87517 1.02540 1.01302 1.61942 1.07887 1.14275 1.38543 1.22219 1.01194 0.87463 0.96020 1.22321 0.96276 0.94782 0.88213 1.87977 1.69481 1.56506 1.15077 1.20273 0.95007 0.93410 0.80258 1.21924 1.31252 1.17634 0.92310 0.92059 1.25935 0.97168 0.97119 0.98484 1.70777 1.27982 1.18761 1.37412 0.83370 0.75609 0.75248 0.74900 1.21268 1.20898 1.21215 1.22562 1.01110 0.92772 0.85787 0.87289 1.22033 1.04429 0.93269 0.95441 1.30466 1.11857 1.16575 1.12923 1.08986 0.75345 0.80282 0.78044 1.93624 1.40354 1.85039 1.74495 1.93608 1.50978 1.84907 1.64507 1.31376 1.11915 1.18024 1.15304 0.95255 0.90741 0.90201 0.93641 0.89700 0.94389 0.94119 0.98937 0.99008 0.92347 0.87739 0.89188 0.84296 0.84310 0.84052 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 8.59 60.06 0.52 0.60 16 2 N -0.50 -6.36 4.72 -233.04 -1.10 -7.46 16 3 C 0.06 0.78 4.97 -3.82 -0.02 0.76 16 4 C 0.06 1.08 5.99 37.16 0.22 1.30 16 5 O -0.37 -8.77 10.27 -35.23 -0.36 -9.13 16 6 C 0.19 5.00 5.00 36.01 0.18 5.18 16 7 C -0.59 -17.58 9.43 -34.44 -0.32 -17.90 16 8 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 9 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 10 N -0.91 -27.91 13.65 55.43 0.76 -27.15 16 11 Si 1.08 25.40 29.90 -169.99 -5.08 20.31 16 12 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 15 C 0.09 0.82 2.65 -66.18 -0.18 0.65 16 16 H 0.11 0.97 8.04 -51.93 -0.42 0.55 16 17 C -0.11 -0.85 5.80 -25.67 -0.15 -1.00 16 18 C -0.59 -3.45 7.26 37.77 0.27 -3.18 16 19 S 2.39 19.58 6.10 -107.50 -0.66 18.92 16 20 O -0.94 -11.04 18.14 -57.73 -1.05 -12.09 16 21 O -0.94 -10.92 18.15 -57.73 -1.05 -11.97 16 22 C -0.63 -4.76 5.76 38.24 0.22 -4.54 16 23 H 0.03 0.26 6.20 -51.93 -0.32 -0.06 16 24 H 0.07 0.68 5.92 -51.93 -0.31 0.38 16 25 H 0.08 1.02 6.37 -51.93 -0.33 0.69 16 26 H 0.05 0.49 7.55 -51.93 -0.39 0.09 16 27 H 0.08 1.14 8.00 -51.93 -0.42 0.72 16 28 H 0.04 0.64 6.34 -51.93 -0.33 0.31 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H -0.01 -0.19 8.01 -51.93 -0.42 -0.61 16 31 H -0.01 -0.21 8.01 -51.93 -0.42 -0.63 16 32 H 0.27 8.08 7.22 -40.82 -0.29 7.79 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.61 5.83 -51.93 -0.30 0.31 16 35 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.14 0.95 5.87 -51.93 -0.31 0.65 16 38 H 0.14 0.92 7.99 -51.93 -0.42 0.51 16 LS Contribution 314.92 15.07 4.75 4.75 Total: -1.00 -37.85 314.92 -8.71 -46.55 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -5.56 Total: -4.97 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 0.65 Total: -17.77 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: -0.34 Total: -34.61 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -2.46 Total: -33.19 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.31 kcal Atomic # 16 Polarization: 19.58 SS G_CDS: -0.66 Total: 18.92 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -37.85 -8.71 -46.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385199064.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.294 kcal (2) G-P(sol) polarization free energy of solvation -37.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds