Wall clock time and date at job start Mon Mar 30 2020 02:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 110.99967 * 2 1 4 4 C 1.53006 * 109.46980 * 66.04627 * 3 2 1 5 5 O 1.42904 * 109.46946 * 64.99979 * 4 3 2 6 6 C 1.42901 * 113.99537 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46890 * 180.02562 * 6 5 4 8 8 H 1.08006 * 120.00159 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00120 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00089 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99938 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 269.99556 * 11 9 7 13 13 H 1.48503 * 109.47261 * 149.99737 * 11 9 7 14 14 H 1.48500 * 109.47454 * 29.99730 * 11 9 7 15 15 C 1.46900 * 110.99848 * 236.04599 * 2 1 3 16 16 H 1.09000 * 110.01036 * 178.25267 * 15 2 1 17 17 C 1.53868 * 110.02785 * 299.63089 * 15 2 1 18 18 C 1.54167 * 108.70400 * 166.47422 * 17 15 2 19 19 S 1.82917 * 105.08349 * 332.09119 * 18 17 15 20 20 O 1.42104 * 109.35247 * 115.52444 * 19 18 17 21 21 O 1.42103 * 109.35428 * 248.58940 * 19 18 17 22 22 C 1.55045 * 110.02497 * 56.87826 * 15 2 1 23 23 H 1.09003 * 109.47046 * 59.99777 * 1 2 3 24 24 H 1.09002 * 109.47247 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46976 * 299.99786 * 1 2 3 26 26 H 1.08993 * 109.46832 * 306.04770 * 3 2 1 27 27 H 1.08994 * 109.47037 * 186.04227 * 3 2 1 28 28 H 1.08996 * 109.47172 * 305.00162 * 4 3 2 29 29 H 1.08997 * 109.46636 * 184.99637 * 4 3 2 30 30 H 1.09003 * 109.46905 * 60.00448 * 6 5 4 31 31 H 1.08996 * 109.47465 * 299.99930 * 6 5 4 32 32 H 0.96998 * 119.99255 * 0.02562 * 10 9 7 33 33 H 1.09002 * 109.65207 * 286.32454 * 17 15 2 34 34 H 1.08998 * 109.64762 * 46.62235 * 17 15 2 35 35 H 1.08997 * 110.32179 * 90.99251 * 18 17 15 36 36 H 1.09000 * 110.32073 * 213.19255 * 18 17 15 37 37 H 1.09000 * 110.78870 * 316.53735 * 22 15 2 38 38 H 1.08995 * 110.79757 * 80.00692 * 22 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3183 5 8 2.2956 1.3975 2.3979 6 6 2.0222 1.9635 3.6813 7 6 2.7704 1.1941 4.7393 8 1 3.3922 0.3564 4.4596 9 6 2.6604 1.5589 6.0643 10 7 1.9029 2.5786 6.4050 11 14 3.5885 0.6056 7.3756 12 1 2.7412 -0.5094 7.8699 13 1 3.9216 1.5118 8.5039 14 1 4.8404 0.0565 6.7956 15 6 1.9954 -0.7660 -1.1376 16 1 3.0848 -0.7297 -1.1396 17 6 1.5170 -2.2261 -1.0563 18 6 1.7885 -2.9115 -2.4103 19 16 1.7299 -1.5641 -3.6460 20 8 3.0121 -1.4135 -4.2397 21 8 0.5837 -1.7299 -4.4695 22 6 1.4425 -0.1902 -2.4667 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.5611 1.9273 -0.8309 27 1 3.0797 1.3444 -0.1082 28 1 0.5532 2.0058 1.4692 29 1 1.9439 3.1011 1.2831 30 1 0.9520 1.9102 3.8813 31 1 2.3430 3.0051 3.6949 32 1 1.4214 3.0737 5.7240 33 1 2.0597 -2.7463 -0.2670 34 1 0.4487 -2.2503 -0.8410 35 1 2.7729 -3.3794 -2.4070 36 1 1.0171 -3.6522 -2.6211 37 1 0.3783 0.0289 -2.3804 38 1 1.9987 0.6987 -2.7645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385199064.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:30 Heat of formation + Delta-G solvation = -138.905960 kcal Electronic energy + Delta-G solvation = -19975.545103 eV Core-core repulsion = 16751.514203 eV Total energy + Delta-G solvation = -3224.030899 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.10569 -38.45798 -38.10836 -37.09908 -35.46087 -34.72987 -31.00157 -30.07408 -28.49294 -27.32943 -25.53125 -24.69446 -22.58532 -20.98643 -19.83596 -19.16927 -18.21200 -17.75544 -17.49878 -16.98218 -16.72172 -15.89781 -15.81790 -15.68531 -15.50091 -15.30829 -14.88737 -14.46670 -14.11326 -13.72209 -13.50038 -13.34983 -13.24654 -13.14096 -13.06587 -12.73834 -12.68478 -12.49196 -12.39985 -11.97595 -11.90042 -11.77918 -11.49502 -11.30765 -10.82854 -10.81626 -10.29767 -9.27400 -8.81710 -6.52283 -0.93217 1.53926 1.58608 1.63458 1.83377 2.50829 2.55664 2.81100 3.02069 3.05201 3.09784 3.47286 3.66112 3.75020 3.90841 3.99472 4.10713 4.15472 4.32764 4.42327 4.45948 4.49473 4.55567 4.62553 4.76206 4.84267 4.85961 4.92889 4.95001 5.09656 5.20823 5.70787 5.92285 6.01187 6.04975 6.36131 6.72452 7.28691 8.59499 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.035976 B = 0.003345 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.103086 B = 8368.223434 C = 8692.890049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.531 5.531 3 C 0.065 3.935 4 C 0.051 3.949 5 O -0.387 6.387 6 C 0.196 3.804 7 C -0.619 4.619 8 H 0.053 0.947 9 C -0.030 4.030 10 N -0.931 5.931 11 Si 1.130 2.870 12 H -0.268 1.268 13 H -0.277 1.277 14 H -0.270 1.270 15 C 0.083 3.917 16 H 0.110 0.890 17 C -0.115 4.115 18 C -0.564 4.564 19 S 2.402 3.598 20 O -0.978 6.978 21 O -0.979 6.979 22 C -0.624 4.624 23 H 0.052 0.948 24 H 0.091 0.909 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.046 0.954 30 H -0.021 1.021 31 H -0.022 1.022 32 H 0.255 0.745 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.155 0.845 36 H 0.161 0.839 37 H 0.153 0.847 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.703 -9.165 -18.868 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 N -0.254 5.254 3 C -0.063 4.063 4 C -0.026 4.026 5 O -0.307 6.307 6 C 0.121 3.879 7 C -0.657 4.657 8 H 0.072 0.928 9 C -0.227 4.227 10 N -0.567 5.567 11 Si 0.949 3.051 12 H -0.193 1.193 13 H -0.202 1.202 14 H -0.194 1.194 15 C -0.027 4.027 16 H 0.128 0.872 17 C -0.153 4.153 18 C -0.697 4.697 19 S 2.589 3.411 20 O -0.975 6.975 21 O -0.976 6.976 22 C -0.757 4.757 23 H 0.070 0.930 24 H 0.110 0.890 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.061 0.939 29 H 0.064 0.936 30 H -0.003 1.003 31 H -0.004 1.004 32 H 0.064 0.936 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.173 0.827 36 H 0.179 0.821 37 H 0.171 0.829 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.053 -9.624 -17.882 20.411 hybrid contribution -1.046 1.305 -1.520 2.260 sum -3.099 -8.319 -19.402 21.337 Atomic orbital electron populations 1.22712 0.86793 1.03712 1.01139 1.61864 1.08860 1.13915 1.40771 1.22143 1.01410 0.88502 0.94237 1.22707 0.96271 0.95433 0.88187 1.87922 1.70501 1.57286 1.14943 1.19919 0.93653 0.92411 0.81923 1.22282 1.31787 1.17914 0.93703 0.92845 1.27589 0.96973 0.97052 1.01083 1.70903 1.28986 1.19741 1.37107 0.82790 0.75264 0.74584 0.72448 1.19273 1.20197 1.19443 1.22644 1.01305 0.93438 0.85361 0.87195 1.22060 1.05010 0.92184 0.96063 1.30321 1.13726 1.15461 1.10153 1.08457 0.73623 0.80791 0.78193 1.93571 1.41857 1.85911 1.76197 1.93559 1.51906 1.85640 1.66527 1.31292 1.12732 1.17986 1.13640 0.92999 0.89023 0.92713 0.90362 0.89921 0.93917 0.93630 1.00331 1.00405 0.93557 0.87944 0.88207 0.82706 0.82097 0.82889 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.07 8.59 127.69 1.10 1.17 16 2 N -0.53 -12.49 4.72 -891.19 -4.21 -16.70 16 3 C 0.06 1.63 4.97 86.30 0.43 2.06 16 4 C 0.05 1.77 5.99 71.98 0.43 2.21 16 5 O -0.39 -18.52 10.27 -148.98 -1.53 -20.05 16 6 C 0.20 10.89 5.00 71.24 0.36 11.24 16 7 C -0.62 -37.16 9.43 25.60 0.24 -36.92 16 8 H 0.05 3.22 7.81 -2.91 -0.02 3.19 16 9 C -0.03 -1.74 5.46 84.65 0.46 -1.28 16 10 N -0.93 -57.38 13.65 21.45 0.29 -57.09 16 11 Si 1.13 50.15 29.90 68.60 2.05 52.20 16 12 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 13 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 14 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 15 C 0.08 1.36 2.65 45.91 0.12 1.48 16 16 H 0.11 1.76 8.04 -2.39 -0.02 1.74 16 17 C -0.11 -1.41 5.80 31.28 0.18 -1.23 16 18 C -0.56 -4.98 7.26 72.38 0.53 -4.46 16 19 S 2.40 35.51 6.10 -56.49 -0.34 35.16 16 20 O -0.98 -22.23 18.14 -127.47 -2.31 -24.55 16 21 O -0.98 -21.51 18.15 -127.47 -2.31 -23.82 16 22 C -0.62 -7.90 5.76 72.68 0.42 -7.48 16 23 H 0.05 0.78 6.20 -2.39 -0.01 0.77 16 24 H 0.09 1.48 5.92 -2.39 -0.01 1.46 16 25 H 0.05 1.36 6.37 -2.39 -0.02 1.35 16 26 H 0.08 1.46 7.55 -2.39 -0.02 1.44 16 27 H 0.08 2.11 8.00 -2.39 -0.02 2.09 16 28 H 0.04 1.44 6.34 -2.39 -0.02 1.42 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 30 H -0.02 -1.19 8.01 -2.39 -0.02 -1.21 16 31 H -0.02 -1.23 8.01 -2.39 -0.02 -1.25 16 32 H 0.26 15.87 7.22 -92.71 -0.67 15.20 16 33 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.10 1.05 5.83 -2.39 -0.01 1.03 16 35 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.16 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.15 1.61 5.87 -2.39 -0.01 1.59 16 38 H 0.15 1.62 7.99 -2.39 -0.02 1.60 16 Total: -1.00 -82.04 314.92 -2.95 -84.99 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: 1.15 Total: 3.06 kcal Atomic # 6 Polarization: -37.47 SS G_CDS: 4.26 Total: -33.20 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -3.91 Total: -73.79 kcal Atomic # 8 Polarization: -62.27 SS G_CDS: -6.16 Total: -68.42 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 2.05 Total: 52.20 kcal Atomic # 16 Polarization: 35.51 SS G_CDS: -0.34 Total: 35.16 kcal Total: -82.04 -2.95 -84.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385199064.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.914 kcal (2) G-P(sol) polarization free energy of solvation -82.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds