Wall clock time and date at job start Mon Mar 30 2020 02:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46906 * 110.99888 * 2 1 4 4 C 1.52998 * 109.47215 * 66.04186 * 3 2 1 5 5 O 1.42897 * 109.46795 * 65.00306 * 4 3 2 6 6 C 1.42905 * 113.99899 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47179 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00563 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99902 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99913 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99766 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46985 * 179.97438 * 11 9 7 13 13 H 1.48494 * 109.47276 * 299.99832 * 11 9 7 14 14 H 1.48498 * 109.47150 * 60.00043 * 11 9 7 15 15 C 1.46900 * 111.00368 * 236.04318 * 2 1 3 16 16 H 1.09005 * 109.63927 * 64.38053 * 15 2 1 17 17 C 1.53877 * 109.64323 * 303.95284 * 15 2 1 18 18 C 1.55048 * 106.61825 * 192.96344 * 17 15 2 19 19 S 1.83283 * 102.57022 * 42.43870 * 18 17 15 20 20 O 1.42099 * 109.35678 * 90.17807 * 19 18 17 21 21 O 1.42100 * 109.35279 * 223.38704 * 19 18 17 22 22 C 1.54167 * 109.64647 * 184.67869 * 15 2 1 23 23 H 1.09003 * 109.47211 * 60.00406 * 1 2 3 24 24 H 1.09002 * 109.47195 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47371 * 300.00374 * 1 2 3 26 26 H 1.09000 * 109.46758 * 306.04409 * 3 2 1 27 27 H 1.08993 * 109.47047 * 186.04986 * 3 2 1 28 28 H 1.08995 * 109.47274 * 305.00344 * 4 3 2 29 29 H 1.09002 * 109.46559 * 184.99809 * 4 3 2 30 30 H 1.09007 * 109.46810 * 59.99780 * 6 5 4 31 31 H 1.09003 * 109.46936 * 300.00543 * 6 5 4 32 32 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 33 33 H 1.08995 * 110.02597 * 312.25615 * 17 15 2 34 34 H 1.08999 * 110.02645 * 73.67953 * 17 15 2 35 35 H 1.09011 * 110.78605 * 160.70601 * 18 17 15 36 36 H 1.08996 * 110.79608 * 283.97314 * 18 17 15 37 37 H 1.09005 * 110.31846 * 266.66043 * 22 15 2 38 38 H 1.08996 * 110.32062 * 28.85518 * 22 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 1.3182 5 8 2.2954 1.3977 2.3978 6 6 2.0220 1.9637 3.6812 7 6 2.7703 1.1944 4.7391 8 1 3.3927 0.3573 4.4595 9 6 2.6602 1.5593 6.0643 10 7 1.9026 2.5790 6.4048 11 14 3.5871 0.6053 7.3757 12 1 3.3031 1.1935 8.7094 13 1 3.1505 -0.8139 7.3570 14 1 5.0451 0.6783 7.1034 15 6 1.9955 -0.7660 -1.1375 16 1 1.7124 -0.2781 -2.0703 17 6 1.4252 -2.1949 -1.1072 18 6 2.2615 -3.0275 -2.1129 19 16 3.9719 -2.4633 -1.7727 20 8 4.5501 -3.2898 -0.7719 21 8 4.6527 -2.2557 -3.0026 22 6 3.5322 -0.8448 -1.0425 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.5610 1.9273 -0.8310 27 1 3.0796 1.3445 -0.1083 28 1 0.5531 2.0059 1.4690 29 1 1.9437 3.1012 1.2829 30 1 0.9518 1.9105 3.8812 31 1 2.3428 3.0054 3.6947 32 1 1.8249 2.8354 7.3371 33 1 1.5207 -2.6137 -0.1055 34 1 0.3783 -2.1855 -1.4102 35 1 2.1587 -4.0940 -1.9119 36 1 1.9726 -2.7992 -3.1388 37 1 3.9887 -0.0358 -1.6128 38 1 3.8498 -0.8007 -0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385199065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:32 Heat of formation + Delta-G solvation = -106.969301 kcal Electronic energy + Delta-G solvation = -20079.313249 eV Core-core repulsion = 16856.667228 eV Total energy + Delta-G solvation = -3222.646022 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.93484 -37.16075 -36.58759 -36.12371 -34.17401 -32.63145 -30.13405 -29.42545 -26.92333 -25.54519 -24.66843 -22.29645 -21.44573 -20.35548 -18.94694 -17.13531 -17.06966 -16.36512 -15.92873 -15.84911 -15.56381 -14.86846 -14.62234 -14.40844 -14.25873 -13.91483 -13.60172 -13.09818 -12.75977 -12.42479 -12.28613 -12.16444 -12.15583 -12.09407 -11.71855 -11.65319 -11.41034 -11.13348 -10.84598 -10.80445 -10.65639 -10.46849 -10.40828 -9.99317 -9.08709 -8.78897 -8.32898 -8.12859 -6.08631 -4.09737 -0.11544 2.35266 3.35164 3.37338 3.41298 3.42011 3.63233 3.94975 4.17187 4.31329 4.37041 4.51504 4.64507 4.73460 4.81442 5.15251 5.22454 5.28085 5.28773 5.33993 5.41659 5.55229 5.56972 5.69443 5.75620 5.86773 5.96756 6.08340 6.22708 6.98737 7.02278 7.11884 7.44307 7.82880 8.18393 8.61957 9.04349 9.55228 11.02959 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020659 B = 0.004197 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.991644 B = 6670.100363 C = 7451.183629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.515 5.515 3 C 0.056 3.944 4 C 0.065 3.935 5 O -0.380 6.380 6 C 0.195 3.805 7 C -0.512 4.512 8 H 0.067 0.933 9 C 0.056 3.944 10 N -0.901 5.901 11 Si 0.907 3.093 12 H -0.287 1.287 13 H -0.274 1.274 14 H -0.275 1.275 15 C 0.094 3.906 16 H 0.059 0.941 17 C -0.118 4.118 18 C -0.588 4.588 19 S 2.392 3.608 20 O -0.931 6.931 21 O -0.945 6.945 22 C -0.590 4.590 23 H 0.023 0.977 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.003 0.997 31 H 0.002 0.998 32 H 0.264 0.736 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.381 -6.910 -19.157 20.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.240 5.240 3 C -0.072 4.072 4 C -0.013 4.013 5 O -0.300 6.300 6 C 0.121 3.879 7 C -0.550 4.550 8 H 0.085 0.915 9 C -0.145 4.145 10 N -0.540 5.540 11 Si 0.735 3.265 12 H -0.212 1.212 13 H -0.200 1.200 14 H -0.200 1.200 15 C -0.017 4.017 16 H 0.077 0.923 17 C -0.157 4.157 18 C -0.718 4.718 19 S 2.575 3.425 20 O -0.928 6.928 21 O -0.942 6.942 22 C -0.720 4.720 23 H 0.041 0.959 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.021 0.979 31 H 0.020 0.980 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.266 -7.622 -18.745 20.362 hybrid contribution -0.884 0.758 0.247 1.191 sum -3.150 -6.864 -18.498 19.981 Atomic orbital electron populations 1.22546 0.87074 1.02359 1.01170 1.61987 1.07832 1.14240 1.39939 1.22263 1.01328 0.87373 0.96187 1.22253 0.96282 0.94656 0.88087 1.87938 1.69622 1.56850 1.15553 1.20174 0.95571 0.93508 0.78685 1.21024 1.28225 1.15346 0.90420 0.91523 1.24941 0.95673 0.95375 0.98495 1.69956 1.39064 1.27005 1.18002 0.86405 0.80186 0.80014 0.79931 1.21234 1.19967 1.20015 1.21921 0.90563 0.95040 0.94133 0.92343 1.22336 1.01142 0.92363 0.99855 1.30605 1.22737 1.10211 1.08249 1.08970 0.78550 0.79076 0.75904 1.93647 1.74701 1.65114 1.59370 1.93599 1.71280 1.85622 1.43747 1.30715 1.04136 1.21342 1.15767 0.95880 0.91012 0.90218 0.94089 0.89627 0.94435 0.94207 0.97940 0.98041 0.92676 0.87922 0.88587 0.84388 0.84736 0.84594 0.82332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.99 60.06 0.54 0.72 16 2 N -0.52 -6.61 4.54 -233.60 -1.06 -7.67 16 3 C 0.06 0.76 5.20 -3.82 -0.02 0.74 16 4 C 0.07 1.15 5.99 37.16 0.22 1.37 16 5 O -0.38 -8.94 10.27 -35.23 -0.36 -9.30 16 6 C 0.20 5.31 5.69 36.00 0.20 5.52 16 7 C -0.51 -15.10 9.43 -34.44 -0.32 -15.42 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 11 Si 0.91 22.03 29.54 -169.99 -5.02 17.01 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.09 0.88 2.35 -66.65 -0.16 0.73 16 16 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 17 C -0.12 -0.92 4.91 -25.19 -0.12 -1.04 16 18 C -0.59 -3.75 7.31 38.24 0.28 -3.47 16 19 S 2.39 23.16 6.11 -107.50 -0.66 22.51 16 20 O -0.93 -13.07 18.15 -57.71 -1.05 -14.11 16 21 O -0.95 -11.85 18.15 -57.71 -1.05 -12.90 16 22 C -0.59 -5.68 5.42 37.77 0.20 -5.48 16 23 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.07 0.67 6.35 -51.93 -0.33 0.34 16 25 H 0.08 1.03 6.37 -51.93 -0.33 0.70 16 26 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 27 H 0.09 1.14 6.67 -51.93 -0.35 0.80 16 28 H 0.04 0.64 6.33 -51.93 -0.33 0.31 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.00 0.08 8.14 -51.92 -0.42 -0.34 16 31 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 0.59 7.15 -51.93 -0.37 0.22 16 35 H 0.14 0.72 8.14 -51.92 -0.42 0.29 16 36 H 0.13 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.14 1.06 8.00 -51.93 -0.42 0.65 16 38 H 0.16 1.85 8.02 -51.93 -0.42 1.44 16 LS Contribution 320.38 15.07 4.83 4.83 Total: -1.00 -37.22 320.38 -8.79 -46.01 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -5.89 Total: -5.30 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 0.73 Total: -14.81 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: -0.33 Total: -33.92 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -2.46 Total: -36.32 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 23.16 SS G_CDS: -0.66 Total: 22.51 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -37.22 -8.79 -46.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385199065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.961 kcal (2) G-P(sol) polarization free energy of solvation -37.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds