Wall clock time and date at job start Mon Mar 30 2020 02:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46906 * 110.99888 * 2 1 4 4 C 1.52998 * 109.47215 * 66.04186 * 3 2 1 5 5 O 1.42897 * 109.46795 * 65.00306 * 4 3 2 6 6 C 1.42905 * 113.99899 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47179 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00563 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99902 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99913 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99766 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46985 * 179.97438 * 11 9 7 13 13 H 1.48494 * 109.47276 * 299.99832 * 11 9 7 14 14 H 1.48498 * 109.47150 * 60.00043 * 11 9 7 15 15 C 1.46900 * 111.00368 * 236.04318 * 2 1 3 16 16 H 1.09005 * 109.63927 * 64.38053 * 15 2 1 17 17 C 1.53877 * 109.64323 * 303.95284 * 15 2 1 18 18 C 1.55048 * 106.61825 * 192.96344 * 17 15 2 19 19 S 1.83283 * 102.57022 * 42.43870 * 18 17 15 20 20 O 1.42099 * 109.35678 * 90.17807 * 19 18 17 21 21 O 1.42100 * 109.35279 * 223.38704 * 19 18 17 22 22 C 1.54167 * 109.64647 * 184.67869 * 15 2 1 23 23 H 1.09003 * 109.47211 * 60.00406 * 1 2 3 24 24 H 1.09002 * 109.47195 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47371 * 300.00374 * 1 2 3 26 26 H 1.09000 * 109.46758 * 306.04409 * 3 2 1 27 27 H 1.08993 * 109.47047 * 186.04986 * 3 2 1 28 28 H 1.08995 * 109.47274 * 305.00344 * 4 3 2 29 29 H 1.09002 * 109.46559 * 184.99809 * 4 3 2 30 30 H 1.09007 * 109.46810 * 59.99780 * 6 5 4 31 31 H 1.09003 * 109.46936 * 300.00543 * 6 5 4 32 32 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 33 33 H 1.08995 * 110.02597 * 312.25615 * 17 15 2 34 34 H 1.08999 * 110.02645 * 73.67953 * 17 15 2 35 35 H 1.09011 * 110.78605 * 160.70601 * 18 17 15 36 36 H 1.08996 * 110.79608 * 283.97314 * 18 17 15 37 37 H 1.09005 * 110.31846 * 266.66043 * 22 15 2 38 38 H 1.08996 * 110.32062 * 28.85518 * 22 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 1.3182 5 8 2.2954 1.3977 2.3978 6 6 2.0220 1.9637 3.6812 7 6 2.7703 1.1944 4.7391 8 1 3.3927 0.3573 4.4595 9 6 2.6602 1.5593 6.0643 10 7 1.9026 2.5790 6.4048 11 14 3.5871 0.6053 7.3757 12 1 3.3031 1.1935 8.7094 13 1 3.1505 -0.8139 7.3570 14 1 5.0451 0.6783 7.1034 15 6 1.9955 -0.7660 -1.1375 16 1 1.7124 -0.2781 -2.0703 17 6 1.4252 -2.1949 -1.1072 18 6 2.2615 -3.0275 -2.1129 19 16 3.9719 -2.4633 -1.7727 20 8 4.5501 -3.2898 -0.7719 21 8 4.6527 -2.2557 -3.0026 22 6 3.5322 -0.8448 -1.0425 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.5610 1.9273 -0.8310 27 1 3.0796 1.3445 -0.1083 28 1 0.5531 2.0059 1.4690 29 1 1.9437 3.1012 1.2829 30 1 0.9518 1.9105 3.8812 31 1 2.3428 3.0054 3.6947 32 1 1.8249 2.8354 7.3371 33 1 1.5207 -2.6137 -0.1055 34 1 0.3783 -2.1855 -1.4102 35 1 2.1587 -4.0940 -1.9119 36 1 1.9726 -2.7992 -3.1388 37 1 3.9887 -0.0358 -1.6128 38 1 3.8498 -0.8007 -0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385199065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:32 Heat of formation + Delta-G solvation = -137.623729 kcal Electronic energy + Delta-G solvation = -20080.642525 eV Core-core repulsion = 16856.667228 eV Total energy + Delta-G solvation = -3223.975298 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.86421 -38.23585 -38.04865 -37.03499 -35.26258 -34.64733 -30.85937 -30.78451 -28.87926 -26.45656 -25.52120 -24.44322 -22.49354 -21.20737 -19.75101 -18.60633 -17.98576 -17.78191 -17.39362 -16.98950 -16.65210 -16.34247 -15.82150 -15.64137 -15.48939 -14.91018 -14.64416 -14.47835 -13.88834 -13.57775 -13.26584 -13.21243 -13.11161 -13.08032 -13.01565 -12.82846 -12.74678 -12.65178 -12.26417 -12.14323 -12.04345 -11.75705 -11.50292 -11.24796 -11.16059 -10.83402 -10.15666 -9.18260 -8.31180 -6.42691 -0.86345 1.40125 1.44504 1.52884 1.63954 2.35576 2.67898 2.82789 3.02734 3.16591 3.26229 3.47608 3.66826 3.83938 4.03704 4.13175 4.17175 4.26614 4.46808 4.55498 4.60451 4.65342 4.68762 4.74208 4.84960 4.85793 4.98174 5.01552 5.09946 5.17571 5.21256 5.56583 5.98593 6.07804 6.18478 6.58540 6.88111 7.29677 8.80905 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020659 B = 0.004197 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.991644 B = 6670.100363 C = 7451.183629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.547 5.547 3 C 0.063 3.937 4 C 0.053 3.947 5 O -0.394 6.394 6 C 0.210 3.790 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.008 3.992 10 N -0.931 5.931 11 Si 0.979 3.021 12 H -0.274 1.274 13 H -0.266 1.266 14 H -0.267 1.267 15 C 0.090 3.910 16 H 0.091 0.909 17 C -0.122 4.122 18 C -0.552 4.552 19 S 2.395 3.605 20 O -0.985 6.985 21 O -0.978 6.978 22 C -0.590 4.590 23 H 0.048 0.952 24 H 0.089 0.911 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.041 0.959 29 H 0.043 0.957 30 H -0.017 1.017 31 H -0.018 1.018 32 H 0.270 0.730 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.157 0.843 36 H 0.168 0.832 37 H 0.152 0.848 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.355 -7.854 -20.561 22.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.272 5.272 3 C -0.065 4.065 4 C -0.024 4.024 5 O -0.314 6.314 6 C 0.135 3.865 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.190 4.190 10 N -0.570 5.570 11 Si 0.802 3.198 12 H -0.199 1.199 13 H -0.191 1.191 14 H -0.192 1.192 15 C -0.019 4.019 16 H 0.109 0.891 17 C -0.160 4.160 18 C -0.685 4.685 19 S 2.583 3.417 20 O -0.983 6.983 21 O -0.975 6.975 22 C -0.720 4.720 23 H 0.066 0.934 24 H 0.107 0.893 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.001 0.999 31 H 0.000 1.000 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.143 0.857 35 H 0.175 0.825 36 H 0.186 0.814 37 H 0.170 0.830 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.207 -8.558 -20.171 22.145 hybrid contribution -0.689 1.099 0.602 1.430 sum -3.895 -7.459 -19.569 21.301 Atomic orbital electron populations 1.22551 0.86125 1.03482 1.00975 1.61864 1.08970 1.13910 1.42483 1.22168 1.01545 0.88394 0.94353 1.22645 0.96232 0.95282 0.88225 1.87894 1.70591 1.57549 1.15371 1.19759 0.93890 0.92299 0.80526 1.21355 1.29199 1.15900 0.91899 0.92264 1.25908 0.96242 0.96182 1.00682 1.70059 1.39877 1.28148 1.18954 0.85295 0.78870 0.78676 0.76945 1.19857 1.19108 1.19192 1.22118 0.89721 0.95834 0.94244 0.89091 1.22415 1.02778 0.91281 0.99567 1.30410 1.17255 1.11026 1.09843 1.08674 0.80161 0.78486 0.74423 1.93574 1.77335 1.66453 1.60900 1.93549 1.73594 1.85971 1.44379 1.30660 1.05159 1.21889 1.14309 0.93361 0.89282 0.93027 0.90601 0.89907 0.94045 0.93850 0.99928 1.00014 0.92087 0.89517 0.85709 0.82471 0.81365 0.83033 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.99 127.69 1.15 1.47 16 2 N -0.55 -13.10 4.54 -892.97 -4.06 -17.16 16 3 C 0.06 1.61 5.20 86.30 0.45 2.06 16 4 C 0.05 1.89 5.99 71.98 0.43 2.33 16 5 O -0.39 -19.16 10.27 -148.98 -1.53 -20.69 16 6 C 0.21 11.94 5.69 71.23 0.41 12.34 16 7 C -0.55 -33.05 9.43 25.60 0.24 -32.81 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 9 C 0.01 0.48 5.46 84.66 0.46 0.95 16 10 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 11 Si 0.98 45.17 29.54 68.60 2.03 47.20 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 15 C 0.09 1.45 2.35 45.61 0.11 1.56 16 16 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 17 C -0.12 -1.47 4.91 31.59 0.16 -1.32 16 18 C -0.55 -4.97 7.31 72.68 0.53 -4.44 16 19 S 2.39 44.70 6.11 -56.49 -0.34 44.35 16 20 O -0.99 -28.55 18.15 -127.49 -2.31 -30.86 16 21 O -0.98 -23.86 18.15 -127.49 -2.31 -26.17 16 22 C -0.59 -10.90 5.42 72.38 0.39 -10.51 16 23 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.09 1.41 6.35 -2.39 -0.02 1.40 16 25 H 0.05 1.30 6.37 -2.39 -0.02 1.29 16 26 H 0.08 1.43 8.12 -2.39 -0.02 1.41 16 27 H 0.08 2.15 6.67 -2.39 -0.02 2.13 16 28 H 0.04 1.43 6.33 -2.39 -0.02 1.42 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 31 H -0.02 -1.06 8.14 -2.39 -0.02 -1.07 16 32 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.12 0.89 7.15 -2.39 -0.02 0.87 16 35 H 0.16 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.17 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.15 2.20 8.00 -2.38 -0.02 2.19 16 38 H 0.13 3.23 8.02 -2.39 -0.02 3.21 16 Total: -1.00 -82.90 320.38 -2.89 -85.79 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: 1.04 Total: 2.06 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: 4.32 Total: -28.37 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -3.77 Total: -73.31 kcal Atomic # 8 Polarization: -71.56 SS G_CDS: -6.16 Total: -77.72 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: 44.70 SS G_CDS: -0.34 Total: 44.35 kcal Total: -82.90 -2.89 -85.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385199065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.835 kcal (2) G-P(sol) polarization free energy of solvation -82.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds