Wall clock time and date at job start Mon Mar 30 2020 01:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42894 * 109.47318 * 2 1 4 4 C 1.42895 * 114.00478 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47743 * 179.97438 * 4 3 2 6 6 S 1.81396 * 109.47301 * 179.97438 * 5 4 3 7 7 O 1.42102 * 110.54578 * 68.37978 * 6 5 4 8 8 O 1.42097 * 110.54319 * 291.62333 * 6 5 4 9 9 N 1.65609 * 104.44756 * 180.02562 * 6 5 4 10 10 C 1.46495 * 120.00046 * 65.00065 * 9 6 5 11 11 C 1.53004 * 109.47052 * 159.13246 * 10 9 6 12 12 C 1.50700 * 115.55097 * 294.33149 * 11 10 9 13 13 H 1.08000 * 119.99724 * 95.26588 * 12 11 10 14 14 C 1.37872 * 119.99989 * 274.99073 * 12 11 10 15 15 N 1.31519 * 120.00156 * 355.56043 * 14 12 11 16 16 Si 1.86797 * 119.99989 * 175.55686 * 14 12 11 17 17 H 1.48501 * 109.47159 * 90.00074 * 16 14 12 18 18 H 1.48506 * 109.47496 * 209.99881 * 16 14 12 19 19 H 1.48498 * 109.47391 * 330.00294 * 16 14 12 20 20 C 1.53001 * 117.49742 * 80.00346 * 11 10 9 21 21 C 1.53005 * 117.49347 * 148.66115 * 11 10 9 22 22 H 1.08993 * 109.47186 * 59.99958 * 1 2 3 23 23 H 1.09005 * 109.47383 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46857 * 299.99720 * 1 2 3 25 25 H 1.09000 * 109.47053 * 239.99767 * 2 1 3 26 26 H 1.09003 * 109.47181 * 120.00187 * 2 1 3 27 27 H 1.09003 * 109.47506 * 59.99468 * 4 3 2 28 28 H 1.09007 * 109.47292 * 300.00220 * 4 3 2 29 29 H 1.09007 * 109.46976 * 60.00003 * 5 4 3 30 30 H 1.08998 * 109.46880 * 300.00482 * 5 4 3 31 31 H 0.97000 * 119.99741 * 244.99620 * 9 6 5 32 32 H 1.09003 * 109.46977 * 39.13447 * 10 9 6 33 33 H 1.09002 * 109.47371 * 279.13756 * 10 9 6 34 34 H 0.96996 * 120.00045 * 185.00274 * 15 14 12 35 35 H 1.08991 * 117.49791 * 214.99978 * 20 11 10 36 36 H 1.09007 * 117.49553 * 0.02562 * 20 11 10 37 37 H 1.08993 * 117.50038 * 359.97438 * 21 11 10 38 38 H 1.08998 * 117.48996 * 144.97537 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8254 2.9384 -0.0012 6 16 5.6337 3.0815 -0.0012 7 8 6.1696 2.6316 -1.2380 8 8 6.1694 2.6326 1.2360 9 7 5.9190 4.7129 -0.0011 10 6 5.5170 5.5267 1.1488 11 6 6.3175 6.8306 1.1554 12 6 7.8000 6.6821 1.3819 13 1 8.4732 6.6373 0.5387 14 6 8.2973 6.6092 2.6658 15 7 7.4896 6.7567 3.6932 16 14 10.1182 6.3007 2.9459 17 1 10.8365 7.5990 3.0073 18 1 10.3056 5.5705 4.2254 19 1 10.6603 5.4875 1.8279 20 6 5.8544 7.9487 0.2192 21 6 5.6363 8.0748 1.7291 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8333 0.9766 -0.8908 28 1 3.8340 0.9764 0.8892 29 1 3.4230 3.4222 0.8889 30 1 3.4222 3.4216 -0.8911 31 1 6.3523 5.1294 -0.7624 32 1 5.7116 4.9763 2.0693 33 1 4.4532 5.7538 1.0791 34 1 7.8494 6.7780 4.5938 35 1 6.6220 8.5767 -0.2328 36 1 4.9792 7.7553 -0.4012 37 1 4.6178 7.9644 2.1013 38 1 6.2604 8.7856 2.2706 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404057704.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:51 Heat of formation + Delta-G solvation = -101.611430 kcal Electronic energy + Delta-G solvation = -19965.376492 eV Core-core repulsion = 16742.962805 eV Total energy + Delta-G solvation = -3222.413687 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.32289 -37.10749 -36.68616 -35.59343 -33.32752 -32.80360 -31.88601 -30.33999 -25.98561 -24.85862 -23.57952 -23.06398 -21.14291 -19.37390 -18.84434 -17.63493 -16.91885 -16.63885 -16.21182 -15.76393 -15.42284 -14.72730 -14.56283 -14.44765 -14.04970 -13.52455 -13.19155 -12.78785 -12.57113 -12.32557 -12.16827 -12.04591 -11.75669 -11.61745 -11.44993 -11.41392 -11.25205 -10.93143 -10.88801 -10.68261 -10.47880 -10.21928 -9.88449 -9.52950 -9.16263 -8.62809 -8.42537 -8.15020 -6.02061 -4.09351 0.50949 3.07766 3.32557 3.40885 3.44826 3.47409 4.13769 4.40204 4.43220 4.52707 4.75506 4.85652 4.93251 5.02015 5.10032 5.26005 5.28284 5.38095 5.41705 5.62881 5.63444 5.83747 5.86087 6.20933 6.23765 6.33752 6.48198 6.69669 6.89398 7.00483 7.08422 7.38705 7.56440 7.67848 7.88960 8.39536 8.90965 9.57336 11.05621 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024071 B = 0.004479 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.943718 B = 6249.898036 C = 6611.693042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.380 6.380 4 C 0.078 3.922 5 C -0.643 4.643 6 S 2.617 3.383 7 O -0.968 6.968 8 O -0.945 6.945 9 N -1.092 6.092 10 C 0.154 3.846 11 C 0.034 3.966 12 C -0.493 4.493 13 H 0.060 0.940 14 C 0.072 3.928 15 N -0.878 5.878 16 Si 0.889 3.111 17 H -0.282 1.282 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.212 4.212 21 C -0.145 4.145 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.417 0.583 32 H 0.083 0.917 33 H 0.034 0.966 34 H 0.261 0.739 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.553 -9.210 -6.647 16.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.300 6.300 4 C 0.000 4.000 5 C -0.769 4.769 6 S 2.706 3.294 7 O -0.958 6.958 8 O -0.935 6.935 9 N -0.853 5.853 10 C 0.028 3.972 11 C 0.032 3.968 12 C -0.531 4.531 13 H 0.078 0.922 14 C -0.131 4.131 15 N -0.514 5.514 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.249 4.249 21 C -0.183 4.183 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.252 0.748 32 H 0.101 0.899 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.167 -9.905 -6.262 16.187 hybrid contribution 0.551 0.254 0.003 0.607 sum -10.615 -9.651 -6.259 15.653 Atomic orbital electron populations 1.21743 0.93541 1.02289 1.03265 1.22549 0.95817 0.83744 1.00485 1.87941 1.19991 1.26577 1.95485 1.21998 0.83282 0.93232 1.01535 1.30965 1.29769 1.03544 1.12633 1.04741 0.76427 0.73920 0.74353 1.93565 1.76144 1.80545 1.45561 1.93631 1.74316 1.80334 1.45222 1.55116 1.74836 1.26525 1.28819 1.21035 0.94838 0.94364 0.86945 1.18927 0.94734 0.84945 0.98188 1.20343 0.89423 1.51276 0.92040 0.92195 1.24958 0.97637 0.94370 0.96150 1.69964 1.34334 1.48616 0.98527 0.86631 0.85442 0.78261 0.77961 1.20809 1.21072 1.19679 1.23031 1.01637 1.06943 0.93317 1.22501 0.99045 1.03577 0.93215 0.91806 0.91009 0.91720 0.93095 0.92993 0.91879 0.91679 0.84246 0.84439 0.74804 0.89852 0.94798 0.92938 0.90359 0.91658 0.91854 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.05 0.47 6.66 37.16 0.25 0.72 16 3 O -0.38 -4.75 10.34 -35.23 -0.36 -5.12 16 4 C 0.08 0.94 5.95 37.16 0.22 1.16 16 5 C -0.64 -8.09 6.44 37.16 0.24 -7.85 16 6 S 2.62 42.84 5.46 -107.50 -0.59 42.26 16 7 O -0.97 -17.50 18.08 -57.54 -1.04 -18.54 16 8 O -0.95 -19.31 17.43 -57.54 -1.00 -20.31 16 9 N -1.09 -19.46 5.77 -10.61 -0.06 -19.52 16 10 C 0.15 3.13 6.00 -4.04 -0.02 3.10 16 11 C 0.03 0.78 1.49 -155.66 -0.23 0.55 16 12 C -0.49 -13.01 8.75 -34.44 -0.30 -13.31 16 13 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 14 C 0.07 1.97 5.43 -17.82 -0.10 1.87 16 15 N -0.88 -24.41 12.66 55.43 0.70 -23.71 16 16 Si 0.89 21.43 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.21 -4.26 9.96 -26.69 -0.27 -4.53 16 21 C -0.14 -3.20 9.15 -26.69 -0.24 -3.44 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.14 1.68 8.14 -51.92 -0.42 1.25 16 30 H 0.14 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.42 7.10 8.66 -34.48 -0.30 6.80 16 32 H 0.08 1.91 7.59 -51.93 -0.39 1.51 16 33 H 0.03 0.58 8.09 -51.93 -0.42 0.16 16 34 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 35 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 337.02 15.07 5.08 5.08 Total: -1.00 -32.59 337.02 -8.53 -41.12 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.15 Total: 4.83 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: -0.07 Total: -22.49 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.64 Total: -43.23 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -2.41 Total: -43.96 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 42.84 SS G_CDS: -0.59 Total: 42.26 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.59 -8.53 -41.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404057704.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.493 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds