Wall clock time and date at job start Mon Mar 30 2020 01:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42894 * 109.47318 * 2 1 4 4 C 1.42895 * 114.00478 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47743 * 179.97438 * 4 3 2 6 6 S 1.81396 * 109.47301 * 179.97438 * 5 4 3 7 7 O 1.42102 * 110.54578 * 68.37978 * 6 5 4 8 8 O 1.42097 * 110.54319 * 291.62333 * 6 5 4 9 9 N 1.65609 * 104.44756 * 180.02562 * 6 5 4 10 10 C 1.46495 * 120.00046 * 65.00065 * 9 6 5 11 11 C 1.53004 * 109.47052 * 159.13246 * 10 9 6 12 12 C 1.50700 * 115.55097 * 294.33149 * 11 10 9 13 13 H 1.08000 * 119.99724 * 95.26588 * 12 11 10 14 14 C 1.37872 * 119.99989 * 274.99073 * 12 11 10 15 15 N 1.31519 * 120.00156 * 355.56043 * 14 12 11 16 16 Si 1.86797 * 119.99989 * 175.55686 * 14 12 11 17 17 H 1.48501 * 109.47159 * 90.00074 * 16 14 12 18 18 H 1.48506 * 109.47496 * 209.99881 * 16 14 12 19 19 H 1.48498 * 109.47391 * 330.00294 * 16 14 12 20 20 C 1.53001 * 117.49742 * 80.00346 * 11 10 9 21 21 C 1.53005 * 117.49347 * 148.66115 * 11 10 9 22 22 H 1.08993 * 109.47186 * 59.99958 * 1 2 3 23 23 H 1.09005 * 109.47383 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46857 * 299.99720 * 1 2 3 25 25 H 1.09000 * 109.47053 * 239.99767 * 2 1 3 26 26 H 1.09003 * 109.47181 * 120.00187 * 2 1 3 27 27 H 1.09003 * 109.47506 * 59.99468 * 4 3 2 28 28 H 1.09007 * 109.47292 * 300.00220 * 4 3 2 29 29 H 1.09007 * 109.46976 * 60.00003 * 5 4 3 30 30 H 1.08998 * 109.46880 * 300.00482 * 5 4 3 31 31 H 0.97000 * 119.99741 * 244.99620 * 9 6 5 32 32 H 1.09003 * 109.46977 * 39.13447 * 10 9 6 33 33 H 1.09002 * 109.47371 * 279.13756 * 10 9 6 34 34 H 0.96996 * 120.00045 * 185.00274 * 15 14 12 35 35 H 1.08991 * 117.49791 * 214.99978 * 20 11 10 36 36 H 1.09007 * 117.49553 * 0.02562 * 20 11 10 37 37 H 1.08993 * 117.50038 * 359.97438 * 21 11 10 38 38 H 1.08998 * 117.48996 * 144.97537 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8254 2.9384 -0.0012 6 16 5.6337 3.0815 -0.0012 7 8 6.1696 2.6316 -1.2380 8 8 6.1694 2.6326 1.2360 9 7 5.9190 4.7129 -0.0011 10 6 5.5170 5.5267 1.1488 11 6 6.3175 6.8306 1.1554 12 6 7.8000 6.6821 1.3819 13 1 8.4732 6.6373 0.5387 14 6 8.2973 6.6092 2.6658 15 7 7.4896 6.7567 3.6932 16 14 10.1182 6.3007 2.9459 17 1 10.8365 7.5990 3.0073 18 1 10.3056 5.5705 4.2254 19 1 10.6603 5.4875 1.8279 20 6 5.8544 7.9487 0.2192 21 6 5.6363 8.0748 1.7291 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8333 0.9766 -0.8908 28 1 3.8340 0.9764 0.8892 29 1 3.4230 3.4222 0.8889 30 1 3.4222 3.4216 -0.8911 31 1 6.3523 5.1294 -0.7624 32 1 5.7116 4.9763 2.0693 33 1 4.4532 5.7538 1.0791 34 1 7.8494 6.7780 4.5938 35 1 6.6220 8.5767 -0.2328 36 1 4.9792 7.7553 -0.4012 37 1 4.6178 7.9644 2.1013 38 1 6.2604 8.7856 2.2706 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404057704.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:51 Heat of formation + Delta-G solvation = -125.861732 kcal Electronic energy + Delta-G solvation = -19966.428064 eV Core-core repulsion = 16742.962805 eV Total energy + Delta-G solvation = -3223.465259 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.16817 -38.77054 -38.12822 -37.02331 -34.86134 -33.87224 -33.65332 -31.14526 -27.82758 -26.59627 -24.56411 -23.73456 -22.81804 -21.15324 -20.19024 -18.87350 -18.33398 -17.67774 -17.55278 -16.93181 -16.87077 -16.54823 -15.87499 -15.50072 -15.24936 -15.14590 -14.68770 -13.99458 -13.72154 -13.43514 -13.39621 -13.19629 -13.10073 -13.06248 -12.95670 -12.84751 -12.81135 -12.37246 -12.19120 -12.17800 -11.92593 -11.89385 -11.31203 -10.96360 -10.69284 -10.35601 -10.20183 -9.87016 -8.07274 -6.17139 -0.77761 1.38144 1.43234 1.50014 1.79002 2.43727 2.51400 2.98433 3.21828 3.26192 3.53578 3.59239 3.76950 4.11207 4.15108 4.26080 4.31102 4.43804 4.48109 4.58977 4.63444 4.67264 4.73546 4.79155 4.85737 5.01942 5.10359 5.26206 5.36888 5.38013 5.70840 5.80178 5.85246 6.08581 6.27764 6.45443 6.88423 7.50614 8.99404 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024071 B = 0.004479 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.943718 B = 6249.898036 C = 6611.693042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.038 3.962 3 O -0.397 6.397 4 C 0.065 3.935 5 C -0.616 4.616 6 S 2.628 3.372 7 O -0.988 6.988 8 O -0.995 6.995 9 N -1.096 6.096 10 C 0.162 3.838 11 C 0.002 3.998 12 C -0.503 4.503 13 H 0.050 0.950 14 C 0.026 3.974 15 N -0.902 5.902 16 Si 0.934 3.066 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.181 4.181 21 C -0.152 4.152 22 H 0.061 0.939 23 H 0.093 0.907 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.151 0.849 30 H 0.164 0.836 31 H 0.420 0.580 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.258 0.742 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.311 -9.690 -7.965 18.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.038 4.038 3 O -0.317 6.317 4 C -0.013 4.013 5 C -0.746 4.746 6 S 2.721 3.279 7 O -0.978 6.978 8 O -0.985 6.985 9 N -0.856 5.856 10 C 0.036 3.964 11 C 0.000 4.000 12 C -0.541 4.541 13 H 0.068 0.932 14 C -0.174 4.174 15 N -0.540 5.540 16 Si 0.761 3.239 17 H -0.199 1.199 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.218 4.218 21 C -0.191 4.191 22 H 0.080 0.920 23 H 0.112 0.888 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.169 0.831 30 H 0.182 0.818 31 H 0.255 0.745 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.867 -10.368 -7.593 18.185 hybrid contribution 1.024 0.355 0.352 1.139 sum -11.843 -10.013 -7.241 17.116 Atomic orbital electron populations 1.21773 0.92411 1.03624 1.02853 1.22844 0.96815 0.82588 1.01524 1.87901 1.19614 1.28509 1.95668 1.22145 0.83800 0.92735 1.02642 1.30598 1.24561 1.04852 1.14618 1.04162 0.78001 0.72876 0.72823 1.93534 1.77918 1.80517 1.45863 1.93573 1.76952 1.80877 1.47086 1.55002 1.75803 1.26622 1.28195 1.20787 0.96529 0.92675 0.86442 1.19047 0.93470 0.86777 1.00713 1.20681 0.91693 1.50122 0.91577 0.93176 1.25558 1.00578 0.94899 0.96412 1.70042 1.35320 1.50122 0.98522 0.85923 0.82313 0.78285 0.77405 1.19883 1.21327 1.19932 1.23033 1.02309 1.04148 0.92354 1.22422 0.99338 1.02553 0.94771 0.92000 0.88848 0.92320 0.91796 0.92271 0.90430 0.91307 0.83118 0.81770 0.74478 0.93234 0.90887 0.93240 0.90817 0.88024 0.89987 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 71.98 0.74 -1.21 16 2 C 0.04 0.63 6.66 71.98 0.48 1.10 16 3 O -0.40 -8.88 10.34 -148.98 -1.54 -10.42 16 4 C 0.07 1.42 5.95 71.98 0.43 1.85 16 5 C -0.62 -13.72 6.44 71.98 0.46 -13.25 16 6 S 2.63 83.40 5.46 -56.49 -0.31 83.09 16 7 O -0.99 -34.74 18.08 -127.65 -2.31 -37.05 16 8 O -0.99 -41.08 17.43 -127.65 -2.23 -43.30 16 9 N -1.10 -37.68 5.77 -187.49 -1.08 -38.76 16 10 C 0.16 6.37 6.00 86.38 0.52 6.88 16 11 C 0.00 0.08 1.49 -52.92 -0.08 0.00 16 12 C -0.50 -26.74 8.75 25.60 0.22 -26.52 16 13 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 14 C 0.03 1.44 5.43 84.65 0.46 1.90 16 15 N -0.90 -51.11 12.66 21.45 0.27 -50.84 16 16 Si 0.93 44.58 29.54 68.60 2.03 46.61 16 17 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 19 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 20 C -0.18 -6.85 9.96 30.62 0.30 -6.55 16 21 C -0.15 -6.56 9.15 30.62 0.28 -6.28 16 22 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.15 3.15 8.14 -2.39 -0.02 3.13 16 30 H 0.16 2.87 8.14 -2.39 -0.02 2.86 16 31 H 0.42 13.76 8.66 -96.74 -0.84 12.92 16 32 H 0.05 2.28 7.59 -2.39 -0.02 2.26 16 33 H 0.07 2.28 8.09 -2.39 -0.02 2.26 16 34 H 0.26 14.16 8.32 -92.71 -0.77 13.39 16 35 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 37 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 38 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -70.53 337.02 -1.15 -71.68 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.20 Total: 21.06 kcal Atomic # 6 Polarization: -45.89 SS G_CDS: 3.82 Total: -42.07 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -0.81 Total: -89.60 kcal Atomic # 8 Polarization: -84.69 SS G_CDS: -6.07 Total: -90.77 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: 83.40 SS G_CDS: -0.31 Total: 83.09 kcal Total: -70.53 -1.15 -71.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404057704.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.184 kcal (2) G-P(sol) polarization free energy of solvation -70.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds