Wall clock time and date at job start Mon Mar 30 2020 01:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47078 * 2 1 4 4 C 1.36932 * 120.00025 * 293.72403 * 3 2 1 5 5 H 1.08005 * 120.00227 * 149.43912 * 4 3 2 6 6 C 1.38811 * 120.00480 * 329.43550 * 4 3 2 7 7 N 1.31622 * 119.99619 * 337.46023 * 6 4 3 8 8 Si 1.86792 * 120.00357 * 157.45402 * 6 4 3 9 9 H 1.48500 * 109.47163 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47304 * 120.00225 * 8 6 4 11 11 H 1.48496 * 109.47539 * 240.00233 * 8 6 4 12 12 S 1.65601 * 119.99951 * 113.72301 * 3 2 1 13 13 O 1.42100 * 104.27765 * 333.93032 * 12 3 2 14 14 O 1.42097 * 104.27918 * 206.07002 * 12 3 2 15 15 C 1.81404 * 104.44855 * 90.00077 * 12 3 2 16 16 C 1.53001 * 109.47284 * 180.02562 * 15 12 3 17 17 H 1.09004 * 109.48042 * 60.01900 * 16 15 12 18 18 C 1.53093 * 109.48280 * 180.02562 * 16 15 12 19 19 C 1.53179 * 109.16173 * 177.59073 * 18 16 15 20 20 C 1.53180 * 109.03451 * 303.01551 * 19 18 16 21 21 C 1.53093 * 109.16192 * 56.98716 * 20 19 18 22 22 O 1.42904 * 109.41330 * 302.38617 * 21 20 19 23 23 H 1.09008 * 109.47583 * 60.00064 * 1 2 3 24 24 H 1.09000 * 109.47436 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47422 * 299.99767 * 1 2 3 26 26 H 1.09004 * 109.47043 * 240.00067 * 2 1 3 27 27 H 1.08996 * 109.47247 * 120.00186 * 2 1 3 28 28 H 0.96996 * 119.99638 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47294 * 59.99752 * 15 12 3 30 30 H 1.09001 * 109.46801 * 300.00065 * 15 12 3 31 31 H 1.08997 * 109.51748 * 297.49558 * 18 16 15 32 32 H 1.09003 * 109.51877 * 57.68113 * 18 16 15 33 33 H 1.09003 * 109.54032 * 183.15425 * 19 18 16 34 34 H 1.08996 * 109.54235 * 62.88734 * 19 18 16 35 35 H 1.08995 * 109.52462 * 297.08166 * 20 19 18 36 36 H 1.08999 * 109.57229 * 176.92094 * 20 19 18 37 37 H 1.08999 * 109.47991 * 182.41105 * 21 20 19 38 38 H 1.08994 * 109.48066 * 62.37061 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7966 2.1857 -1.0857 5 1 1.6840 3.2518 -0.9538 6 6 1.7168 1.6313 -2.3557 7 7 2.2718 0.4631 -2.5999 8 14 0.8217 2.5431 -3.7183 9 1 0.2906 3.8253 -3.1900 10 1 1.7649 2.8197 -4.8315 11 1 -0.3015 1.7095 -4.2169 12 16 2.8382 1.9695 1.3130 13 8 2.3669 1.1857 2.4005 14 8 2.6119 3.3716 1.2681 15 6 4.5786 1.5943 0.9651 16 6 5.4489 2.0943 2.1199 17 1 5.1481 1.5984 3.0428 18 6 6.9178 1.7783 1.8262 19 6 7.7877 2.3349 2.9575 20 6 7.5320 3.8394 3.0902 21 6 6.0394 4.0758 3.3351 22 8 5.2861 3.5069 2.2622 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.2157 0.0755 -3.4872 29 1 4.8796 2.0895 0.0419 30 1 4.7033 0.5168 0.8567 31 1 7.0520 0.6986 1.7611 32 1 7.2080 2.2400 0.8824 33 1 8.8391 2.1627 2.7273 34 1 7.5316 1.8376 3.8929 35 1 7.8347 4.3427 2.1720 36 1 8.1058 4.2347 3.9284 37 1 5.8449 5.1470 3.3877 38 1 5.7463 3.6063 4.2741 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407977082.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:05 Heat of formation + Delta-G solvation = -125.719625 kcal Electronic energy + Delta-G solvation = -21119.762374 eV Core-core repulsion = 17896.303277 eV Total energy + Delta-G solvation = -3223.459097 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.18418 -36.05224 -35.56120 -34.34711 -33.50738 -32.49411 -31.75762 -29.18666 -27.61679 -24.86263 -24.13958 -22.17840 -21.47891 -20.16612 -18.30322 -16.84997 -16.44094 -16.20750 -15.81283 -15.23917 -14.80073 -14.47625 -14.34268 -14.24108 -13.47126 -13.14041 -12.87934 -12.58403 -12.27554 -12.20190 -11.93838 -11.84331 -11.24102 -11.20922 -11.00213 -10.93656 -10.88507 -10.68571 -10.57886 -10.52878 -10.40203 -10.24797 -10.11061 -9.73746 -9.57865 -9.30899 -9.05865 -7.81276 -6.47416 -4.03284 1.72179 3.11921 3.19830 3.28036 3.95670 3.99221 4.36513 4.74525 4.82700 4.85518 4.91203 5.08626 5.26623 5.28996 5.45257 5.53900 5.60355 5.69945 5.80556 5.87630 5.95491 6.05252 6.13270 6.15221 6.22936 6.34566 6.40211 6.47149 6.62128 6.76518 7.01889 7.27190 7.39657 7.45281 7.61831 8.38175 8.76262 9.23936 10.42840 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.025065 B = 0.005960 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.831369 B = 4697.112999 C = 5021.424219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.108 3.892 3 N -0.809 5.809 4 C -0.243 4.243 5 H 0.111 0.889 6 C 0.035 3.965 7 N -0.832 5.832 8 Si 0.919 3.081 9 H -0.261 1.261 10 H -0.279 1.279 11 H -0.277 1.277 12 S 2.492 3.508 13 O -1.008 7.008 14 O -0.967 6.967 15 C -0.652 4.652 16 C 0.105 3.895 17 H 0.060 0.940 18 C -0.143 4.143 19 C -0.124 4.124 20 C -0.156 4.156 21 C 0.057 3.943 22 O -0.369 6.369 23 H 0.059 0.941 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.104 0.896 27 H 0.055 0.945 28 H 0.272 0.728 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.162 0.117 4.706 8.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.018 4.018 3 N -0.633 5.633 4 C -0.389 4.389 5 H 0.129 0.871 6 C -0.177 4.177 7 N -0.472 5.472 8 Si 0.745 3.255 9 H -0.185 1.185 10 H -0.205 1.205 11 H -0.202 1.202 12 S 2.592 3.408 13 O -0.998 6.998 14 O -0.957 6.957 15 C -0.770 4.770 16 C 0.046 3.954 17 H 0.077 0.923 18 C -0.182 4.182 19 C -0.162 4.162 20 C -0.194 4.194 21 C -0.020 4.020 22 O -0.288 6.288 23 H 0.078 0.922 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.121 0.879 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.142 0.858 30 H 0.138 0.862 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.877 0.495 5.458 8.793 hybrid contribution 0.635 -0.183 -0.949 1.157 sum 7.512 0.312 4.509 8.767 Atomic orbital electron populations 1.21870 0.97177 0.99628 1.01711 1.21414 0.93975 0.83638 1.02794 1.53775 1.55200 1.19997 1.34344 1.19850 1.41094 0.93363 0.84637 0.87119 1.25701 0.96822 0.96624 0.98556 1.69912 1.37466 1.17330 1.22445 0.85961 0.79358 0.80183 0.80024 1.18522 1.20482 1.20231 1.12604 0.76260 0.75192 0.76794 1.93335 1.78976 1.71595 1.55878 1.93369 1.83615 1.31874 1.86849 1.31052 1.32135 1.08540 1.05308 1.21641 0.94770 0.82185 0.96809 0.92252 1.22189 0.95126 1.01507 0.99333 1.21633 0.99876 0.95692 0.98994 1.22203 0.97591 0.96927 1.02672 1.22587 0.90205 0.99270 0.89929 1.88140 1.67607 1.20800 1.52203 0.92237 0.93713 0.93771 0.87868 0.92614 0.91711 0.85815 0.86238 0.90915 0.90803 0.91606 0.91911 0.90960 0.91121 0.88649 0.93344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.96 37.15 0.37 -2.61 16 2 C 0.11 2.44 5.78 -4.05 -0.02 2.41 16 3 N -0.81 -19.78 2.91 -59.91 -0.17 -19.96 16 4 C -0.24 -6.14 8.63 -15.06 -0.13 -6.27 16 5 H 0.11 2.88 7.26 -52.48 -0.38 2.50 16 6 C 0.04 0.84 4.63 -17.43 -0.08 0.76 16 7 N -0.83 -20.03 11.06 55.49 0.61 -19.42 16 8 Si 0.92 18.84 29.61 -169.99 -5.03 13.80 16 9 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 10 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 11 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 12 S 2.49 60.18 5.16 -107.50 -0.55 59.63 16 13 O -1.01 -25.73 16.65 -57.54 -0.96 -26.69 16 14 O -0.97 -26.17 16.16 -61.87 -1.00 -27.17 16 15 C -0.65 -13.25 5.90 37.16 0.22 -13.03 16 16 C 0.10 1.92 2.69 -26.68 -0.07 1.84 16 17 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 18 C -0.14 -2.11 5.42 -26.59 -0.14 -2.25 16 19 C -0.12 -1.50 6.03 -26.55 -0.16 -1.66 16 20 C -0.16 -1.87 6.14 -26.59 -0.16 -2.03 16 21 C 0.06 0.83 6.84 37.21 0.25 1.09 16 22 O -0.37 -7.20 9.45 -41.90 -0.40 -7.59 16 23 H 0.06 1.26 7.42 -51.92 -0.39 0.88 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.10 2.39 5.53 -51.93 -0.29 2.11 16 27 H 0.06 1.19 7.01 -51.93 -0.36 0.83 16 28 H 0.27 6.12 8.31 -40.82 -0.34 5.78 16 29 H 0.12 2.58 8.14 -51.93 -0.42 2.15 16 30 H 0.12 2.22 8.14 -51.92 -0.42 1.79 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 315.69 15.07 4.76 4.76 Total: -1.00 -30.04 315.69 -8.72 -38.76 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.05 Total: 5.61 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 0.07 Total: -21.74 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.44 Total: -39.38 kcal Atomic # 8 Polarization: -59.09 SS G_CDS: -2.35 Total: -61.45 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.80 kcal Atomic # 16 Polarization: 60.18 SS G_CDS: -0.55 Total: 59.63 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.04 -8.72 -38.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407977082.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.958 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds