Wall clock time and date at job start Mon Mar 30 2020 01:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47078 * 2 1 4 4 C 1.36932 * 120.00025 * 293.72403 * 3 2 1 5 5 H 1.08005 * 120.00227 * 149.43912 * 4 3 2 6 6 C 1.38811 * 120.00480 * 329.43550 * 4 3 2 7 7 N 1.31622 * 119.99619 * 337.46023 * 6 4 3 8 8 Si 1.86792 * 120.00357 * 157.45402 * 6 4 3 9 9 H 1.48500 * 109.47163 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47304 * 120.00225 * 8 6 4 11 11 H 1.48496 * 109.47539 * 240.00233 * 8 6 4 12 12 S 1.65601 * 119.99951 * 113.72301 * 3 2 1 13 13 O 1.42100 * 104.27765 * 333.93032 * 12 3 2 14 14 O 1.42097 * 104.27918 * 206.07002 * 12 3 2 15 15 C 1.81404 * 104.44855 * 90.00077 * 12 3 2 16 16 C 1.53001 * 109.47284 * 180.02562 * 15 12 3 17 17 H 1.09004 * 109.48042 * 60.01900 * 16 15 12 18 18 C 1.53093 * 109.48280 * 180.02562 * 16 15 12 19 19 C 1.53179 * 109.16173 * 177.59073 * 18 16 15 20 20 C 1.53180 * 109.03451 * 303.01551 * 19 18 16 21 21 C 1.53093 * 109.16192 * 56.98716 * 20 19 18 22 22 O 1.42904 * 109.41330 * 302.38617 * 21 20 19 23 23 H 1.09008 * 109.47583 * 60.00064 * 1 2 3 24 24 H 1.09000 * 109.47436 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47422 * 299.99767 * 1 2 3 26 26 H 1.09004 * 109.47043 * 240.00067 * 2 1 3 27 27 H 1.08996 * 109.47247 * 120.00186 * 2 1 3 28 28 H 0.96996 * 119.99638 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47294 * 59.99752 * 15 12 3 30 30 H 1.09001 * 109.46801 * 300.00065 * 15 12 3 31 31 H 1.08997 * 109.51748 * 297.49558 * 18 16 15 32 32 H 1.09003 * 109.51877 * 57.68113 * 18 16 15 33 33 H 1.09003 * 109.54032 * 183.15425 * 19 18 16 34 34 H 1.08996 * 109.54235 * 62.88734 * 19 18 16 35 35 H 1.08995 * 109.52462 * 297.08166 * 20 19 18 36 36 H 1.08999 * 109.57229 * 176.92094 * 20 19 18 37 37 H 1.08999 * 109.47991 * 182.41105 * 21 20 19 38 38 H 1.08994 * 109.48066 * 62.37061 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7966 2.1857 -1.0857 5 1 1.6840 3.2518 -0.9538 6 6 1.7168 1.6313 -2.3557 7 7 2.2718 0.4631 -2.5999 8 14 0.8217 2.5431 -3.7183 9 1 0.2906 3.8253 -3.1900 10 1 1.7649 2.8197 -4.8315 11 1 -0.3015 1.7095 -4.2169 12 16 2.8382 1.9695 1.3130 13 8 2.3669 1.1857 2.4005 14 8 2.6119 3.3716 1.2681 15 6 4.5786 1.5943 0.9651 16 6 5.4489 2.0943 2.1199 17 1 5.1481 1.5984 3.0428 18 6 6.9178 1.7783 1.8262 19 6 7.7877 2.3349 2.9575 20 6 7.5320 3.8394 3.0902 21 6 6.0394 4.0758 3.3351 22 8 5.2861 3.5069 2.2622 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.2157 0.0755 -3.4872 29 1 4.8796 2.0895 0.0419 30 1 4.7033 0.5168 0.8567 31 1 7.0520 0.6986 1.7611 32 1 7.2080 2.2400 0.8824 33 1 8.8391 2.1627 2.7273 34 1 7.5316 1.8376 3.8929 35 1 7.8347 4.3427 2.1720 36 1 8.1058 4.2347 3.9284 37 1 5.8449 5.1470 3.3877 38 1 5.7463 3.6063 4.2741 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407977082.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:05 Heat of formation + Delta-G solvation = -145.725966 kcal Electronic energy + Delta-G solvation = -21120.629914 eV Core-core repulsion = 17896.303277 eV Total energy + Delta-G solvation = -3224.326637 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.44163 -37.87731 -37.59148 -36.39388 -34.65058 -33.84380 -33.58784 -30.95446 -28.96157 -26.71008 -25.28358 -23.55178 -23.21384 -21.28844 -20.18444 -18.75964 -18.29874 -17.61729 -17.20348 -16.85609 -16.56724 -16.19293 -15.54139 -15.47635 -15.25116 -14.61868 -14.43156 -14.00980 -13.79719 -13.69569 -13.53985 -13.32327 -13.06711 -12.71694 -12.63607 -12.57539 -12.51573 -12.36457 -12.10966 -12.04769 -11.91221 -11.84369 -11.55920 -11.45409 -11.18612 -11.08475 -10.43457 -9.64239 -8.28843 -5.94514 -0.15828 1.48267 1.52587 1.64960 2.23402 2.55323 2.66671 2.90981 3.33371 3.63200 3.73841 3.83967 3.87438 3.97701 4.08071 4.20134 4.37814 4.42100 4.50025 4.62050 4.72474 4.74804 4.79340 4.85045 4.92038 5.01376 5.02565 5.06138 5.15389 5.28982 5.33627 5.43203 5.64150 5.82590 6.17932 6.50569 6.89184 7.37383 8.62665 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.025065 B = 0.005960 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.831369 B = 4697.112999 C = 5021.424219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.103 3.897 3 N -0.823 5.823 4 C -0.277 4.277 5 H 0.090 0.910 6 C 0.012 3.988 7 N -0.849 5.849 8 Si 0.974 3.026 9 H -0.269 1.269 10 H -0.272 1.272 11 H -0.267 1.267 12 S 2.501 3.499 13 O -1.025 7.025 14 O -1.003 7.003 15 C -0.636 4.636 16 C 0.095 3.905 17 H 0.062 0.938 18 C -0.140 4.140 19 C -0.122 4.122 20 C -0.151 4.151 21 C 0.041 3.959 22 O -0.407 6.407 23 H 0.048 0.952 24 H 0.076 0.924 25 H 0.036 0.964 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.280 0.720 29 H 0.118 0.882 30 H 0.139 0.861 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.600 -0.500 4.857 9.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 N -0.648 5.648 4 C -0.422 4.422 5 H 0.108 0.892 6 C -0.199 4.199 7 N -0.488 5.488 8 Si 0.797 3.203 9 H -0.193 1.193 10 H -0.198 1.198 11 H -0.192 1.192 12 S 2.605 3.395 13 O -1.015 7.015 14 O -0.993 6.993 15 C -0.760 4.760 16 C 0.037 3.963 17 H 0.080 0.920 18 C -0.179 4.179 19 C -0.160 4.160 20 C -0.188 4.188 21 C -0.035 4.035 22 O -0.328 6.328 23 H 0.067 0.933 24 H 0.095 0.905 25 H 0.055 0.945 26 H 0.116 0.884 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.136 0.864 30 H 0.157 0.843 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.260 -0.126 5.590 9.975 hybrid contribution 0.277 0.004 -0.882 0.925 sum 8.538 -0.122 4.708 9.751 Atomic orbital electron populations 1.21847 0.95980 1.01432 1.00789 1.21537 0.95152 0.82815 1.02791 1.53608 1.56711 1.20577 1.33901 1.19715 1.44026 0.92795 0.85634 0.89197 1.26237 0.96739 0.97280 0.99610 1.69935 1.37616 1.17955 1.23258 0.85161 0.78589 0.78920 0.77627 1.19281 1.19771 1.19154 1.11555 0.77533 0.74140 0.76235 1.93307 1.80118 1.71605 1.56501 1.93325 1.84919 1.33805 1.87245 1.30781 1.29004 1.09970 1.06245 1.21778 0.96766 0.82114 0.95668 0.91981 1.22172 0.92830 1.02627 1.00265 1.21673 1.00623 0.95433 0.98255 1.22180 0.95672 0.97209 1.03748 1.22946 0.91827 0.99658 0.89035 1.88083 1.69271 1.21285 1.54117 0.93271 0.90526 0.94511 0.88355 0.91920 0.91009 0.86385 0.84276 0.89441 0.91459 0.89101 0.90897 0.91416 0.88023 0.87807 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.77 9.96 71.98 0.72 -5.06 16 2 C 0.10 4.64 5.78 86.38 0.50 5.14 16 3 N -0.82 -40.97 2.91 -343.47 -1.00 -41.97 16 4 C -0.28 -14.34 8.63 84.03 0.73 -13.62 16 5 H 0.09 4.91 7.26 -2.91 -0.02 4.89 16 6 C 0.01 0.57 4.63 84.86 0.39 0.96 16 7 N -0.85 -40.59 11.06 21.65 0.24 -40.35 16 8 Si 0.97 38.51 29.61 68.60 2.03 40.54 16 9 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 10 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 11 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 12 S 2.50 122.91 5.16 -56.49 -0.29 122.62 16 13 O -1.03 -52.72 16.65 -127.65 -2.13 -54.85 16 14 O -1.00 -56.04 16.16 -123.51 -2.00 -58.04 16 15 C -0.64 -25.69 5.90 71.98 0.42 -25.26 16 16 C 0.10 3.40 2.69 30.63 0.08 3.48 16 17 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 18 C -0.14 -3.81 5.42 30.69 0.17 -3.65 16 19 C -0.12 -2.53 6.03 30.71 0.19 -2.35 16 20 C -0.15 -3.18 6.14 30.69 0.19 -2.99 16 21 C 0.04 1.15 6.84 72.01 0.49 1.64 16 22 O -0.41 -15.82 9.45 -142.61 -1.35 -17.17 16 23 H 0.05 2.08 7.42 -2.38 -0.02 2.06 16 24 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.10 4.55 5.53 -2.38 -0.01 4.53 16 27 H 0.06 2.67 7.01 -2.39 -0.02 2.65 16 28 H 0.28 12.33 8.31 -92.71 -0.77 11.56 16 29 H 0.12 4.95 8.14 -2.39 -0.02 4.93 16 30 H 0.14 5.01 8.14 -2.39 -0.02 4.99 16 31 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -64.93 315.69 0.41 -64.51 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 1.03 Total: 26.39 kcal Atomic # 6 Polarization: -45.57 SS G_CDS: 3.87 Total: -41.70 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -0.76 Total: -82.32 kcal Atomic # 8 Polarization: -124.59 SS G_CDS: -5.47 Total: -130.05 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Atomic # 16 Polarization: 122.91 SS G_CDS: -0.29 Total: 122.62 kcal Total: -64.93 0.41 -64.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407977082.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.213 kcal (2) G-P(sol) polarization free energy of solvation -64.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds