Wall clock time and date at job start Mon Mar 30 2020 01:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47691 * 2 1 4 4 O 1.42904 * 109.47223 * 240.00105 * 2 1 3 5 5 C 1.52996 * 109.47430 * 120.00057 * 2 1 3 6 6 H 1.09005 * 110.88870 * 62.42398 * 5 2 1 7 7 C 1.55154 * 111.00342 * 298.55038 * 5 2 1 8 8 C 1.54325 * 102.94453 * 206.42078 * 7 5 2 9 9 N 1.47023 * 107.27068 * 22.18711 * 8 7 5 10 10 S 1.65597 * 125.64995 * 181.02274 * 9 8 7 11 11 O 1.42093 * 104.27757 * 333.95683 * 10 9 8 12 12 O 1.42105 * 104.27889 * 206.09724 * 10 9 8 13 13 C 1.81401 * 104.44946 * 90.02838 * 10 9 8 14 14 C 1.53001 * 109.47441 * 180.02562 * 13 10 9 15 15 C 1.50697 * 109.46995 * 180.02562 * 14 13 10 16 16 H 1.07991 * 120.00449 * 359.72153 * 15 14 13 17 17 C 1.37885 * 119.99686 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 14 20 20 H 1.48490 * 109.47339 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47239 * 120.00108 * 19 17 15 22 22 H 1.48504 * 109.46636 * 239.99667 * 19 17 15 23 23 C 1.47428 * 108.70233 * 1.29227 * 9 8 7 24 24 H 1.09003 * 109.47000 * 300.00165 * 1 2 3 25 25 H 1.09006 * 109.46916 * 59.99606 * 1 2 3 26 26 H 1.08997 * 109.47486 * 179.97438 * 1 2 3 27 27 H 0.96695 * 113.99812 * 300.00162 * 4 2 1 28 28 H 1.08998 * 110.72836 * 88.05858 * 7 5 2 29 29 H 1.09001 * 110.87295 * 324.84882 * 7 5 2 30 30 H 1.09006 * 109.88469 * 262.77427 * 8 7 5 31 31 H 1.08996 * 110.01480 * 141.68086 * 8 7 5 32 32 H 1.08998 * 109.47401 * 59.99842 * 13 10 9 33 33 H 1.09006 * 109.47274 * 300.00142 * 13 10 9 34 34 H 1.08998 * 109.47065 * 59.99498 * 14 13 10 35 35 H 1.09001 * 109.46892 * 299.99762 * 14 13 10 36 36 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 37 37 H 1.08995 * 110.36925 * 94.47996 * 23 9 8 38 38 H 1.08998 * 110.36598 * 216.80466 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 1 1.7251 -1.7648 1.2513 7 6 1.5727 0.0031 2.5393 8 6 2.6596 -0.3821 3.5649 9 7 3.8608 -0.7609 2.8065 10 16 5.2923 -1.2762 3.4603 11 8 5.3135 -0.6974 4.7578 12 8 6.2675 -0.9285 2.4869 13 6 5.1171 -3.0784 3.5700 14 6 6.3912 -3.6794 4.1670 15 6 6.2457 -5.1766 4.2575 16 1 5.3339 -5.6516 3.9269 17 6 7.2748 -5.9396 4.7673 18 7 8.3854 -5.3613 5.1695 19 14 7.0916 -7.7948 4.8866 20 1 5.7570 -8.1944 4.3728 21 1 8.1505 -8.4499 4.0776 22 1 7.2215 -8.2147 6.3051 23 6 3.5819 -0.5997 1.3679 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.7209 -1.5952 -1.2329 28 1 0.5965 -0.3641 2.8558 29 1 1.5477 1.0827 2.3911 30 1 2.3197 -1.2254 4.1663 31 1 2.8813 0.4677 4.2104 32 1 4.9536 -3.4889 2.5736 33 1 4.2673 -3.3227 4.2074 34 1 6.5542 -3.2689 5.1635 35 1 7.2412 -3.4352 3.5299 36 1 9.1095 -5.8982 5.5277 37 1 3.9152 0.3795 1.0242 38 1 4.0694 -1.3894 0.7962 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408154283.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:33 Heat of formation + Delta-G solvation = -137.963305 kcal Electronic energy + Delta-G solvation = -20163.064424 eV Core-core repulsion = 16939.074401 eV Total energy + Delta-G solvation = -3223.990023 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.36937 -36.83292 -36.58588 -35.42454 -33.89257 -32.32275 -31.15922 -29.56664 -28.82192 -25.60330 -23.40281 -22.49058 -21.41836 -20.80747 -18.56664 -17.59150 -17.03341 -16.58307 -16.10482 -15.57312 -15.31732 -14.93054 -14.57919 -14.22287 -13.70570 -13.50553 -13.44208 -13.15438 -12.81100 -12.51244 -12.34463 -12.01278 -11.75649 -11.64523 -11.55757 -11.39041 -11.30821 -11.10220 -11.03966 -10.96362 -10.82520 -10.40654 -10.39359 -10.17490 -9.77337 -9.31968 -8.73578 -8.51332 -6.13120 -4.18722 0.73897 3.05770 3.24662 3.31806 3.35190 3.91318 4.25712 4.29183 4.36487 4.40440 4.48036 4.76924 4.89636 4.92854 4.95728 5.21137 5.22123 5.32928 5.41101 5.43698 5.55360 5.62545 5.65779 5.71082 5.77231 5.79305 5.87430 6.05687 6.19261 6.48506 6.49151 7.29541 7.35563 7.37663 7.79961 8.16910 8.84838 9.46032 10.97984 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023854 B = 0.004307 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.525830 B = 6500.147381 C = 7028.224476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.112 3.888 3 H 0.101 0.899 4 O -0.561 6.561 5 C -0.135 4.135 6 H 0.089 0.911 7 C -0.120 4.120 8 C 0.120 3.880 9 N -1.021 6.021 10 S 2.605 3.395 11 O -0.963 6.963 12 O -0.961 6.961 13 C -0.588 4.588 14 C 0.027 3.973 15 C -0.520 4.520 16 H 0.062 0.938 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.134 3.866 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.376 0.624 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.265 0.735 37 H 0.069 0.931 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.505 9.744 -8.436 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.053 3.947 3 H 0.119 0.881 4 O -0.367 6.367 5 C -0.155 4.155 6 H 0.108 0.892 7 C -0.159 4.159 8 C -0.006 4.006 9 N -0.857 5.857 10 S 2.705 3.295 11 O -0.953 6.953 12 O -0.951 6.951 13 C -0.722 4.722 14 C -0.012 4.012 15 C -0.559 4.559 16 H 0.080 0.920 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.728 3.272 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C 0.008 3.992 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.223 0.777 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.257 10.885 -8.181 21.206 hybrid contribution -0.702 -2.164 0.238 2.287 sum -16.959 8.722 -7.944 20.658 Atomic orbital electron populations 1.22510 0.96235 1.02669 1.02822 1.21889 0.92845 0.96600 0.83413 0.88125 1.86616 1.77264 1.29205 1.43594 1.23235 0.95985 1.00974 0.95344 0.89226 1.22636 0.98334 1.00894 0.94055 1.21647 0.84430 1.00342 0.94154 1.58949 1.29967 1.82456 1.14377 1.05322 0.71859 0.78807 0.73520 1.93530 1.85237 1.76282 1.40266 1.93544 1.57076 1.83118 1.61401 1.30485 1.10548 1.21118 1.10011 1.18978 0.88061 0.97687 0.96479 1.21034 1.01665 0.90475 1.42732 0.92024 1.25078 0.95149 0.99210 0.95081 1.69968 1.05275 1.35867 1.41707 0.86406 0.78193 0.84776 0.77860 1.19674 1.20764 1.20786 1.21903 0.94358 1.02211 0.80690 0.91296 0.91842 0.92230 0.77717 0.90069 0.90464 0.91638 0.91088 0.86335 0.86367 0.94856 0.94800 0.92566 0.91305 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.04 9.33 37.15 0.35 -0.70 16 2 C 0.11 0.83 3.11 -26.74 -0.08 0.75 16 3 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 4 O -0.56 -4.92 13.19 -35.23 -0.46 -5.38 16 5 C -0.14 -1.13 2.80 -88.36 -0.25 -1.38 16 6 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 7 C -0.12 -0.93 5.35 -24.90 -0.13 -1.07 16 8 C 0.12 1.34 6.89 -3.06 -0.02 1.32 16 9 N -1.02 -14.32 3.62 -111.29 -0.40 -14.73 16 10 S 2.61 48.69 5.65 -107.50 -0.61 48.08 16 11 O -0.96 -20.55 17.60 -57.54 -1.01 -21.56 16 12 O -0.96 -20.72 17.60 -57.54 -1.01 -21.74 16 13 C -0.59 -11.49 6.12 37.16 0.23 -11.26 16 14 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 15 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 19 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.13 1.60 6.22 -2.41 -0.01 1.58 16 24 H 0.07 0.34 7.32 -51.93 -0.38 -0.04 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.38 2.03 9.04 45.56 0.41 2.45 16 28 H 0.08 0.48 8.11 -51.93 -0.42 0.06 16 29 H 0.08 0.53 8.04 -51.93 -0.42 0.11 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 33 H 0.12 2.08 8.14 -51.92 -0.42 1.65 16 34 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.07 0.83 8.01 -51.93 -0.42 0.41 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 327.29 15.07 4.93 4.93 Total: -1.00 -35.74 327.29 -8.74 -44.49 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -5.41 Total: -0.99 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: -0.48 Total: -23.44 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.33 Total: -40.61 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -2.49 Total: -48.68 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 48.69 SS G_CDS: -0.61 Total: 48.08 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.74 -8.74 -44.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408154283.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.478 kcal (2) G-P(sol) polarization free energy of solvation -35.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds