Wall clock time and date at job start Mon Mar 30 2020 01:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47691 * 2 1 4 4 O 1.42904 * 109.47223 * 240.00105 * 2 1 3 5 5 C 1.52996 * 109.47430 * 120.00057 * 2 1 3 6 6 H 1.09005 * 110.88870 * 62.42398 * 5 2 1 7 7 C 1.55154 * 111.00342 * 298.55038 * 5 2 1 8 8 C 1.54325 * 102.94453 * 206.42078 * 7 5 2 9 9 N 1.47023 * 107.27068 * 22.18711 * 8 7 5 10 10 S 1.65597 * 125.64995 * 181.02274 * 9 8 7 11 11 O 1.42093 * 104.27757 * 333.95683 * 10 9 8 12 12 O 1.42105 * 104.27889 * 206.09724 * 10 9 8 13 13 C 1.81401 * 104.44946 * 90.02838 * 10 9 8 14 14 C 1.53001 * 109.47441 * 180.02562 * 13 10 9 15 15 C 1.50697 * 109.46995 * 180.02562 * 14 13 10 16 16 H 1.07991 * 120.00449 * 359.72153 * 15 14 13 17 17 C 1.37885 * 119.99686 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 14 20 20 H 1.48490 * 109.47339 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47239 * 120.00108 * 19 17 15 22 22 H 1.48504 * 109.46636 * 239.99667 * 19 17 15 23 23 C 1.47428 * 108.70233 * 1.29227 * 9 8 7 24 24 H 1.09003 * 109.47000 * 300.00165 * 1 2 3 25 25 H 1.09006 * 109.46916 * 59.99606 * 1 2 3 26 26 H 1.08997 * 109.47486 * 179.97438 * 1 2 3 27 27 H 0.96695 * 113.99812 * 300.00162 * 4 2 1 28 28 H 1.08998 * 110.72836 * 88.05858 * 7 5 2 29 29 H 1.09001 * 110.87295 * 324.84882 * 7 5 2 30 30 H 1.09006 * 109.88469 * 262.77427 * 8 7 5 31 31 H 1.08996 * 110.01480 * 141.68086 * 8 7 5 32 32 H 1.08998 * 109.47401 * 59.99842 * 13 10 9 33 33 H 1.09006 * 109.47274 * 300.00142 * 13 10 9 34 34 H 1.08998 * 109.47065 * 59.99498 * 14 13 10 35 35 H 1.09001 * 109.46892 * 299.99762 * 14 13 10 36 36 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 37 37 H 1.08995 * 110.36925 * 94.47996 * 23 9 8 38 38 H 1.08998 * 110.36598 * 216.80466 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 1 1.7251 -1.7648 1.2513 7 6 1.5727 0.0031 2.5393 8 6 2.6596 -0.3821 3.5649 9 7 3.8608 -0.7609 2.8065 10 16 5.2923 -1.2762 3.4603 11 8 5.3135 -0.6974 4.7578 12 8 6.2675 -0.9285 2.4869 13 6 5.1171 -3.0784 3.5700 14 6 6.3912 -3.6794 4.1670 15 6 6.2457 -5.1766 4.2575 16 1 5.3339 -5.6516 3.9269 17 6 7.2748 -5.9396 4.7673 18 7 8.3854 -5.3613 5.1695 19 14 7.0916 -7.7948 4.8866 20 1 5.7570 -8.1944 4.3728 21 1 8.1505 -8.4499 4.0776 22 1 7.2215 -8.2147 6.3051 23 6 3.5819 -0.5997 1.3679 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.7209 -1.5952 -1.2329 28 1 0.5965 -0.3641 2.8558 29 1 1.5477 1.0827 2.3911 30 1 2.3197 -1.2254 4.1663 31 1 2.8813 0.4677 4.2104 32 1 4.9536 -3.4889 2.5736 33 1 4.2673 -3.3227 4.2074 34 1 6.5542 -3.2689 5.1635 35 1 7.2412 -3.4352 3.5299 36 1 9.1095 -5.8982 5.5277 37 1 3.9152 0.3795 1.0242 38 1 4.0694 -1.3894 0.7962 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408154283.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:32 Heat of formation + Delta-G solvation = -166.843130 kcal Electronic energy + Delta-G solvation = -20164.316747 eV Core-core repulsion = 16939.074401 eV Total energy + Delta-G solvation = -3225.242346 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.12730 -38.23101 -37.56597 -37.06181 -35.92199 -33.15438 -33.06944 -30.34028 -29.55324 -27.61753 -24.20798 -23.66618 -22.99281 -21.47142 -19.93258 -19.13424 -18.36592 -17.79897 -17.21215 -17.04585 -16.57400 -16.41707 -15.80693 -15.25820 -15.02105 -14.56735 -14.46671 -14.28795 -14.08259 -13.75756 -13.41289 -13.27920 -13.22514 -13.13366 -12.96714 -12.80821 -12.59747 -12.36542 -12.29017 -12.12640 -12.09094 -11.77436 -11.72725 -11.41509 -11.18839 -10.78695 -10.67514 -9.92982 -8.27842 -6.42455 -0.77967 1.40208 1.41144 1.54474 1.72656 2.36918 2.81433 3.01797 3.05734 3.39680 3.56117 3.79213 3.91838 3.98186 4.10364 4.29173 4.33926 4.38423 4.47662 4.61767 4.63076 4.70998 4.88929 4.96331 5.01101 5.03513 5.10369 5.22227 5.22655 5.25822 5.36418 5.46568 5.48406 5.66108 6.03456 6.71258 6.94468 7.27995 8.84793 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023854 B = 0.004307 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.525830 B = 6500.147381 C = 7028.224476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.114 3.886 3 H 0.095 0.905 4 O -0.583 6.583 5 C -0.123 4.123 6 H 0.103 0.897 7 C -0.110 4.110 8 C 0.104 3.896 9 N -1.015 6.015 10 S 2.628 3.372 11 O -0.994 6.994 12 O -0.996 6.996 13 C -0.583 4.583 14 C 0.019 3.981 15 C -0.539 4.539 16 H 0.076 0.924 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.977 3.023 20 H -0.255 1.255 21 H -0.278 1.278 22 H -0.277 1.277 23 C 0.120 3.880 24 H 0.080 0.920 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.389 0.611 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.006 0.994 35 H 0.005 0.995 36 H 0.268 0.732 37 H 0.064 0.936 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.554 8.867 -9.139 24.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.055 3.945 3 H 0.112 0.888 4 O -0.391 6.391 5 C -0.143 4.143 6 H 0.121 0.879 7 C -0.148 4.148 8 C -0.021 4.021 9 N -0.854 5.854 10 S 2.728 3.272 11 O -0.984 6.984 12 O -0.986 6.986 13 C -0.716 4.716 14 C -0.020 4.020 15 C -0.578 4.578 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.574 5.574 19 Si 0.800 3.200 20 H -0.178 1.178 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.005 4.005 24 H 0.099 0.901 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.238 0.762 28 H 0.129 0.871 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.025 0.975 35 H 0.024 0.976 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.316 10.000 -8.886 23.496 hybrid contribution 0.220 -1.809 0.420 1.870 sum -19.097 8.191 -8.466 22.438 Atomic orbital electron populations 1.22444 0.94375 1.03448 1.03304 1.21894 0.94136 0.96018 0.82484 0.88754 1.86587 1.77839 1.30475 1.44160 1.23207 0.92774 1.02149 0.96169 0.87862 1.22675 0.98200 1.01707 0.92260 1.22040 0.84101 1.00757 0.95182 1.58507 1.29534 1.81581 1.15819 1.04253 0.72383 0.78141 0.72467 1.93481 1.86193 1.76661 1.42064 1.93491 1.59528 1.83433 1.62176 1.30355 1.08035 1.22033 1.11154 1.18841 0.90337 0.97818 0.94980 1.21531 1.02261 0.91535 1.42448 0.90547 1.26155 0.94674 1.04958 0.94523 1.70116 1.06369 1.38127 1.42827 0.85221 0.78917 0.77846 0.77995 1.17826 1.20337 1.20297 1.22196 0.97450 1.01842 0.79000 0.90082 0.92119 0.91294 0.76177 0.87061 0.89365 0.90406 0.91706 0.84244 0.84028 0.97538 0.97645 0.92346 0.91800 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 9.33 71.98 0.67 -0.73 16 2 C 0.11 1.40 3.11 30.59 0.10 1.50 16 3 H 0.09 1.27 8.10 -2.39 -0.02 1.25 16 4 O -0.58 -9.10 13.19 -148.98 -1.97 -11.06 16 5 C -0.12 -1.69 2.80 -9.33 -0.03 -1.71 16 6 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 7 C -0.11 -1.31 5.35 31.78 0.17 -1.14 16 8 C 0.10 2.09 6.89 86.73 0.60 2.69 16 9 N -1.01 -27.43 3.62 -506.00 -1.83 -29.26 16 10 S 2.63 99.63 5.65 -56.49 -0.32 99.31 16 11 O -0.99 -43.35 17.60 -127.65 -2.25 -45.60 16 12 O -1.00 -44.30 17.60 -127.65 -2.25 -46.55 16 13 C -0.58 -22.67 6.12 71.98 0.44 -22.23 16 14 C 0.02 1.02 4.98 29.85 0.15 1.17 16 15 C -0.54 -30.12 9.11 25.60 0.23 -29.89 16 16 H 0.08 3.93 7.74 -2.92 -0.02 3.91 16 17 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 18 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 19 Si 0.98 43.32 29.54 68.60 2.03 45.35 16 20 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 22 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 23 C 0.12 2.71 6.22 86.93 0.54 3.25 16 24 H 0.08 0.46 7.32 -2.39 -0.02 0.44 16 25 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.39 3.36 9.04 -74.06 -0.67 2.69 16 28 H 0.11 0.75 8.11 -2.39 -0.02 0.73 16 29 H 0.09 0.90 8.04 -2.39 -0.02 0.88 16 30 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.14 4.77 8.14 -2.39 -0.02 4.75 16 33 H 0.14 4.78 8.14 -2.39 -0.02 4.76 16 34 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 37 H 0.06 1.50 8.01 -2.39 -0.02 1.48 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -79.07 327.29 -2.60 -81.66 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.37 Total: 10.12 kcal Atomic # 6 Polarization: -50.23 SS G_CDS: 3.33 Total: -46.90 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -1.55 Total: -86.34 kcal Atomic # 8 Polarization: -96.75 SS G_CDS: -6.46 Total: -103.21 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 99.63 SS G_CDS: -0.32 Total: 99.31 kcal Total: -79.07 -2.60 -81.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408154283.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.179 kcal (2) G-P(sol) polarization free energy of solvation -79.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds