Wall clock time and date at job start Mon Mar 30 2020 01:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47159 * 2 1 4 4 O 1.42894 * 109.47258 * 120.00505 * 2 1 3 5 5 C 1.52999 * 109.46830 * 240.00476 * 2 1 3 6 6 H 1.09008 * 110.91331 * 303.90098 * 5 2 1 7 7 C 1.55154 * 111.00682 * 67.80178 * 5 2 1 8 8 C 1.54325 * 102.94303 * 153.57509 * 7 5 2 9 9 N 1.47290 * 107.30599 * 337.81911 * 8 7 5 10 10 S 1.65600 * 125.79191 * 178.92104 * 9 8 7 11 11 O 1.42100 * 104.27608 * 26.07547 * 10 9 8 12 12 O 1.42107 * 104.27253 * 153.92822 * 10 9 8 13 13 C 1.81391 * 104.45184 * 270.00009 * 10 9 8 14 14 C 1.52997 * 109.47209 * 180.02562 * 13 10 9 15 15 C 1.50700 * 109.47471 * 180.02562 * 14 13 10 16 16 H 1.08006 * 119.99596 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00403 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99851 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00197 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46985 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46911 * 120.00236 * 19 17 15 22 22 H 1.48491 * 109.47314 * 240.00207 * 19 17 15 23 23 C 1.47425 * 108.55742 * 358.92448 * 9 8 7 24 24 H 1.09002 * 109.47159 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47108 * 299.99539 * 1 2 3 26 26 H 1.08996 * 109.47596 * 59.99721 * 1 2 3 27 27 H 0.96702 * 114.00470 * 59.99903 * 4 2 1 28 28 H 1.09002 * 110.72290 * 271.94195 * 7 5 2 29 29 H 1.08994 * 110.71922 * 35.03664 * 7 5 2 30 30 H 1.09004 * 109.88239 * 97.22707 * 8 7 5 31 31 H 1.08995 * 109.88239 * 218.23629 * 8 7 5 32 32 H 1.08998 * 109.47228 * 300.00401 * 13 10 9 33 33 H 1.09003 * 109.47110 * 60.00464 * 13 10 9 34 34 H 1.09005 * 109.46802 * 300.00055 * 14 13 10 35 35 H 1.08991 * 109.47516 * 59.99858 * 14 13 10 36 36 H 0.97001 * 119.99865 * 180.02562 * 18 17 15 37 37 H 1.09002 * 110.36696 * 265.26054 * 23 9 8 38 38 H 1.08995 * 110.36608 * 143.04891 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0399 -0.7212 -1.2493 6 1 1.6341 -1.7312 -1.3085 7 6 1.7094 0.0870 -2.5319 8 6 2.8111 -0.3602 -3.5157 9 7 3.9335 -0.8743 -2.7124 10 16 5.3468 -1.4970 -3.3100 11 8 5.4920 -0.8794 -4.5815 12 8 6.2938 -1.2732 -2.2744 13 6 5.0163 -3.2707 -3.4979 14 6 6.2626 -3.9661 -4.0491 15 6 5.9879 -5.4395 -4.2058 16 1 5.0211 -5.8400 -3.9385 17 6 6.9706 -6.2764 -4.6904 18 7 8.1480 -5.7889 -5.0154 19 14 6.6302 -8.1029 -4.8839 20 1 5.2402 -8.3959 -4.4513 21 1 6.7968 -8.4893 -6.3080 22 1 7.5829 -8.8754 -4.0468 23 6 3.5884 -0.7419 -1.2853 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.7210 -1.5953 1.2328 28 1 0.7226 -0.1784 -2.9113 29 1 1.7718 1.1580 -2.3396 30 1 2.4300 -1.1476 -4.1661 31 1 3.1396 0.4888 -4.1151 32 1 4.7615 -3.6975 -2.5278 33 1 4.1847 -3.4142 -4.1877 34 1 6.5177 -3.5393 -5.0191 35 1 7.0940 -3.8226 -3.3591 36 1 8.8393 -6.3776 -5.3567 37 1 3.9897 0.1881 -0.8826 38 1 3.9696 -1.5938 -0.7223 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408154284.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:34 Heat of formation + Delta-G solvation = -166.879810 kcal Electronic energy + Delta-G solvation = -20168.113293 eV Core-core repulsion = 16942.869356 eV Total energy + Delta-G solvation = -3225.243936 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.11934 -38.22812 -37.55003 -37.05963 -35.92169 -33.15400 -33.04707 -30.36535 -29.55776 -27.61723 -24.21367 -23.63271 -22.98193 -21.50204 -19.93709 -19.13440 -18.36467 -17.76225 -17.21505 -17.04068 -16.57272 -16.41262 -15.82515 -15.25847 -15.00121 -14.58709 -14.46724 -14.28111 -14.09273 -13.75696 -13.39874 -13.27710 -13.21667 -13.12695 -12.96674 -12.80742 -12.56638 -12.40781 -12.29016 -12.12552 -12.05816 -11.77696 -11.74761 -11.42260 -11.18737 -10.78579 -10.67461 -9.92902 -8.27743 -6.42399 -0.77942 1.40260 1.41199 1.54495 1.72531 2.36952 2.81701 3.01584 3.05829 3.39724 3.56614 3.79169 3.91840 3.98379 4.10549 4.29069 4.34185 4.39178 4.46357 4.62117 4.64124 4.71073 4.89196 4.96991 5.01232 5.02835 5.10873 5.22539 5.22808 5.26251 5.35644 5.46280 5.47890 5.66149 6.03484 6.71300 6.94166 7.28101 8.84888 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023714 B = 0.004317 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.460149 B = 6484.274388 C = 7007.988073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.114 3.886 3 H 0.095 0.905 4 O -0.583 6.583 5 C -0.124 4.124 6 H 0.103 0.897 7 C -0.110 4.110 8 C 0.104 3.896 9 N -1.016 6.016 10 S 2.628 3.372 11 O -0.994 6.994 12 O -0.996 6.996 13 C -0.583 4.583 14 C 0.019 3.981 15 C -0.539 4.539 16 H 0.076 0.924 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.977 3.023 20 H -0.255 1.255 21 H -0.277 1.277 22 H -0.278 1.278 23 C 0.121 3.879 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.389 0.611 28 H 0.111 0.889 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.006 0.994 35 H 0.005 0.995 36 H 0.268 0.732 37 H 0.062 0.938 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.124 10.209 8.525 24.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.055 3.945 3 H 0.113 0.887 4 O -0.390 6.390 5 C -0.144 4.144 6 H 0.121 0.879 7 C -0.149 4.149 8 C -0.020 4.020 9 N -0.855 5.855 10 S 2.728 3.272 11 O -0.984 6.984 12 O -0.986 6.986 13 C -0.716 4.716 14 C -0.020 4.020 15 C -0.578 4.578 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.575 5.575 19 Si 0.800 3.200 20 H -0.178 1.178 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.004 4.004 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.099 0.901 27 H 0.238 0.762 28 H 0.129 0.871 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.025 0.975 35 H 0.024 0.976 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.819 11.264 8.346 23.467 hybrid contribution 0.110 -1.832 -0.442 1.888 sum -18.710 9.431 7.903 22.393 Atomic orbital electron populations 1.22439 0.94397 1.03407 1.03298 1.21901 0.94104 0.96020 0.82468 0.88686 1.86587 1.77819 1.30464 1.44173 1.23176 0.93039 1.01890 0.96294 0.87879 1.22669 0.98472 1.00866 0.92854 1.22073 0.86095 0.99335 0.94516 1.58573 1.34432 1.77072 1.15427 1.04250 0.72629 0.77847 0.72500 1.93481 1.85455 1.75253 1.44219 1.93492 1.60662 1.85808 1.58657 1.30354 1.08567 1.21275 1.11380 1.18841 0.90717 0.97234 0.95191 1.21531 0.99941 0.92401 1.43882 0.90541 1.26151 0.94637 1.04886 0.94627 1.70117 1.05101 1.37787 1.44445 0.85223 0.79014 0.77810 0.77945 1.17819 1.20302 1.20345 1.22107 0.96781 1.02018 0.79465 0.91366 0.92089 0.90113 0.76201 0.87051 0.89415 0.90356 0.91679 0.84221 0.84022 0.97541 0.97643 0.92349 0.91958 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.40 71.98 0.68 -0.73 16 2 C 0.11 1.41 3.11 30.59 0.10 1.50 16 3 H 0.10 1.26 8.08 -2.39 -0.02 1.24 16 4 O -0.58 -9.16 13.04 -148.98 -1.94 -11.10 16 5 C -0.12 -1.70 2.76 -9.40 -0.03 -1.73 16 6 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 7 C -0.11 -1.32 5.66 31.78 0.18 -1.14 16 8 C 0.10 2.11 6.92 86.68 0.60 2.71 16 9 N -1.02 -27.50 3.63 -505.79 -1.84 -29.34 16 10 S 2.63 99.70 5.65 -56.49 -0.32 99.38 16 11 O -0.99 -43.41 17.61 -127.65 -2.25 -45.66 16 12 O -1.00 -44.33 17.61 -127.65 -2.25 -46.58 16 13 C -0.58 -22.64 6.12 71.98 0.44 -22.20 16 14 C 0.02 1.02 4.98 29.85 0.15 1.17 16 15 C -0.54 -30.08 9.11 25.60 0.23 -29.85 16 16 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 17 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 18 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 19 Si 0.98 43.29 29.54 68.60 2.03 45.31 16 20 H -0.25 -10.46 7.11 99.48 0.71 -9.76 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 C 0.12 2.74 6.07 86.85 0.53 3.27 16 24 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.08 0.45 7.56 -2.39 -0.02 0.44 16 27 H 0.39 3.46 9.05 -74.06 -0.67 2.79 16 28 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.09 0.91 7.99 -2.39 -0.02 0.89 16 30 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.14 4.76 8.14 -2.39 -0.02 4.74 16 33 H 0.14 4.77 8.14 -2.39 -0.02 4.75 16 34 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 35 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.06 1.49 8.04 -2.39 -0.02 1.47 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -79.05 327.58 -2.58 -81.63 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.37 Total: 10.23 kcal Atomic # 6 Polarization: -50.14 SS G_CDS: 3.34 Total: -46.80 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -1.55 Total: -86.40 kcal Atomic # 8 Polarization: -96.90 SS G_CDS: -6.44 Total: -103.34 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 99.70 SS G_CDS: -0.32 Total: 99.38 kcal Total: -79.05 -2.58 -81.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408154284.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.254 kcal (2) G-P(sol) polarization free energy of solvation -79.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds