Wall clock time and date at job start Mon Mar 30 2020 01:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47142 * 2 1 4 4 C 1.34222 * 116.99867 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00323 * 359.72425 * 4 3 2 6 6 C 1.50706 * 120.00024 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.47012 * 59.71777 * 6 4 3 8 8 C 1.50696 * 109.47259 * 179.72462 * 6 4 3 9 9 O 1.21287 * 120.00133 * 119.99943 * 8 6 4 10 10 N 1.34775 * 120.00023 * 299.99998 * 8 6 4 11 11 C 1.37101 * 120.00098 * 180.02562 * 10 8 6 12 12 H 1.08000 * 119.99750 * 359.97438 * 11 10 8 13 13 C 1.38946 * 119.99892 * 179.97438 * 11 10 8 14 14 N 1.31414 * 120.00153 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99868 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47254 * 60.00165 * 15 13 11 17 17 H 1.48508 * 109.47219 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47145 * 299.99904 * 15 13 11 19 19 C 1.50704 * 109.46672 * 299.72508 * 6 4 3 20 20 C 1.38235 * 119.99717 * 299.72139 * 19 6 4 21 21 C 1.38239 * 119.99384 * 179.81420 * 20 19 6 22 22 C 1.38237 * 120.00320 * 0.40008 * 21 20 19 23 23 C 1.38233 * 119.99659 * 359.85257 * 22 21 20 24 24 C 1.38235 * 120.00513 * 359.95989 * 23 22 21 25 25 H 1.09009 * 109.46963 * 299.99598 * 1 2 3 26 26 H 1.08997 * 109.47571 * 60.00140 * 1 2 3 27 27 H 1.09004 * 109.46957 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46963 * 240.00402 * 2 1 3 29 29 H 1.09001 * 109.47306 * 120.00307 * 2 1 3 30 30 H 0.97001 * 120.00100 * 0.02562 * 10 8 6 31 31 H 0.96999 * 119.99628 * 180.02562 * 14 13 11 32 32 H 1.07995 * 120.00216 * 0.02562 * 20 19 6 33 33 H 1.08004 * 119.99638 * 180.23214 * 21 20 19 34 34 H 1.08000 * 120.00241 * 179.83615 * 22 21 20 35 35 H 1.08007 * 119.99913 * 179.97438 * 23 22 21 36 36 H 1.08000 * 120.00461 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0807 0.5866 0.0040 6 6 3.9207 2.9374 0.0000 7 1 3.5812 3.4707 0.8879 8 6 5.4256 2.8585 0.0061 9 8 6.0623 3.3501 -0.9017 10 7 6.0640 2.2417 1.0202 11 6 7.4331 2.1704 1.0260 12 1 8.0000 2.6082 0.2177 13 6 8.0913 1.5350 2.0718 14 7 7.4014 1.0028 3.0556 15 14 9.9567 1.4372 2.0793 16 1 10.5244 2.8095 2.0792 17 1 10.4097 0.7148 3.2952 18 1 10.4192 0.7101 0.8699 19 6 3.4611 3.6715 -1.2333 20 6 3.7797 3.1839 -2.4869 21 6 3.3548 3.8552 -3.6181 22 6 2.6183 5.0187 -3.4957 23 6 2.3042 5.5091 -2.2420 24 6 2.7257 4.8357 -1.1108 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.5548 1.8482 1.7460 31 1 7.8610 0.5595 3.7858 32 1 4.3577 2.2766 -2.5825 33 1 3.6005 3.4722 -4.5976 34 1 2.2886 5.5446 -4.3795 35 1 1.7291 6.4183 -2.1463 36 1 2.4807 5.2191 -0.1313 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416148609.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:48 Heat of formation + Delta-G solvation = -99.660129 kcal Electronic energy + Delta-G solvation = -21467.616804 eV Core-core repulsion = 18109.843781 eV Total energy + Delta-G solvation = -3357.773024 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56759 -38.94933 -37.83089 -36.20341 -34.05978 -32.80907 -31.46802 -31.20771 -30.61567 -28.06944 -24.88636 -23.42895 -22.37918 -21.73779 -21.18702 -19.06755 -17.93028 -17.48677 -16.80351 -16.39444 -16.16560 -15.56831 -14.99306 -14.63776 -14.12651 -13.97925 -13.81434 -13.41839 -13.09575 -12.97501 -12.75955 -12.65467 -12.18294 -12.06580 -11.73715 -11.54534 -11.49893 -11.05092 -10.96059 -10.78572 -10.44100 -10.36542 -10.24088 -10.09570 -9.49806 -8.72051 -8.49838 -8.39327 -7.97237 -6.42582 -3.82067 1.56798 1.71024 2.52263 2.74073 3.22479 3.26355 3.31061 3.92015 3.99549 4.20296 4.81499 4.89818 4.94106 4.96258 5.06477 5.14394 5.21880 5.29984 5.31547 5.37082 5.56994 5.69579 5.76724 5.77935 5.88772 5.93395 6.08516 6.30455 6.31807 6.64245 6.67979 6.76320 6.89275 7.25224 7.54078 8.01135 8.06539 8.56317 9.14139 9.49886 9.99025 10.74492 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.015986 B = 0.005932 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.134748 B = 4718.788034 C = 6019.679796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.356 6.356 4 C 0.469 3.531 5 O -0.478 6.478 6 C -0.056 4.056 7 H 0.124 0.876 8 C 0.450 3.550 9 O -0.578 6.578 10 N -0.536 5.536 11 C -0.298 4.298 12 H 0.105 0.895 13 C 0.026 3.974 14 N -0.894 5.894 15 Si 0.933 3.067 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.273 1.273 19 C -0.050 4.050 20 C -0.075 4.075 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.127 4.127 24 C -0.103 4.103 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.393 0.607 31 H 0.273 0.727 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.570 2.405 -5.727 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.273 6.273 4 C 0.309 3.691 5 O -0.363 6.363 6 C -0.079 4.079 7 H 0.141 0.859 8 C 0.234 3.766 9 O -0.463 6.463 10 N -0.169 5.169 11 C -0.428 4.428 12 H 0.123 0.877 13 C -0.177 4.177 14 N -0.534 5.534 15 Si 0.760 3.240 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.198 1.198 19 C -0.050 4.050 20 C -0.093 4.093 21 C -0.142 4.142 22 C -0.139 4.139 23 C -0.145 4.145 24 C -0.121 4.121 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.226 0.774 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.850 2.279 -6.130 15.316 hybrid contribution 0.664 -0.544 0.615 1.056 sum -13.185 1.735 -5.515 14.397 Atomic orbital electron populations 1.21783 0.92867 1.02653 1.03388 1.23001 0.95096 0.80712 1.02695 1.86514 1.24523 1.31914 1.84376 1.23345 0.80582 0.92015 0.73129 1.90789 1.59990 1.42303 1.43191 1.20278 0.97049 0.90712 0.99828 0.85864 1.18739 0.85998 0.86169 0.85674 1.90557 1.66109 1.52166 1.37444 1.41738 1.07538 1.47200 1.20458 1.19691 0.81125 1.34302 1.07665 0.87720 1.25314 1.00844 0.96311 0.95244 1.69624 1.36705 1.36563 1.10529 0.85883 0.81874 0.78602 0.77641 1.19776 1.20898 1.19792 1.18924 0.97880 0.95607 0.92636 1.20974 0.96482 1.00032 0.91790 1.21049 0.98909 0.96019 0.98235 1.21073 0.99148 0.96449 0.97271 1.20982 1.01154 0.99922 0.92474 1.20962 0.97767 0.94501 0.98879 0.91531 0.91599 0.90492 0.91401 0.91111 0.77357 0.91684 0.86251 0.86293 0.86469 0.86230 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.29 37.16 0.38 -1.02 16 2 C 0.06 0.77 6.19 37.16 0.23 1.00 16 3 O -0.36 -5.69 10.14 -39.24 -0.40 -6.09 16 4 C 0.47 8.99 6.76 36.01 0.24 9.23 16 5 O -0.48 -10.79 15.14 -18.75 -0.28 -11.08 16 6 C -0.06 -1.08 2.82 -94.07 -0.27 -1.35 16 7 H 0.12 2.02 7.88 -51.93 -0.41 1.61 16 8 C 0.45 11.13 6.47 -10.99 -0.07 11.06 16 9 O -0.58 -15.92 14.66 5.55 0.08 -15.84 16 10 N -0.54 -14.28 4.68 -10.97 -0.05 -14.33 16 11 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 12 H 0.11 3.10 7.16 -52.49 -0.38 2.72 16 13 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 14 N -0.89 -24.93 13.05 55.50 0.72 -24.21 16 15 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 C -0.05 -0.89 4.33 -104.62 -0.45 -1.34 16 20 C -0.07 -1.35 8.03 -39.58 -0.32 -1.67 16 21 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 22 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 23 C -0.13 -1.67 10.05 -39.58 -0.40 -2.06 16 24 C -0.10 -1.53 9.67 -39.58 -0.38 -1.92 16 25 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 29 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 30 H 0.39 10.29 7.58 -40.82 -0.31 9.98 16 31 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.12 2.36 7.98 -52.49 -0.42 1.94 16 33 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 34 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 36 H 0.12 1.52 7.95 -52.49 -0.42 1.11 16 LS Contribution 320.15 15.07 4.82 4.82 Total: -1.00 -33.30 320.15 -6.64 -39.94 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -4.45 Total: 10.81 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -2.07 Total: -0.39 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.67 Total: -38.54 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.60 Total: -33.00 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.30 -6.64 -39.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416148609.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.720 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds